Origin IGS: aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agatgcctcctttccatctctaaaggttttagattaacagtatatgaaactgttcagactatatcttaaccttaattatccttctgacttgctcgccattgattatggtaatctatcattgtttcataaatatgttttggcttctcttttttcagtaacataagagcaatctctagaggttcaggaataccaaacttatatcttttgctctttctcgaagcgagcctacttctcttcaaaactgcaggatctactgaatgaaaacaaatcgttaaaatatgtctcttattgaataattgatattttgcataatgtcgaatacgttcaattctataatctatcctctgaatttcttcccaactataaaacgaaacttctctaaaaagaaggggtctgaagtaaaacccctgttccgttagacgcagaaaacgtttatctctaaacaaacaaatccatactaaaatagagagaaaatcaaaaacaattgtacctatcactaaaaacattttttcaatcacagaaatattggagtcaaataacaaatatccgtttttagatggtaatacaagaactgcagtcataaagactgcaagagcactcgccaatatagctaaaatgaatattttcaaccagctctgcctaaacactacttctt Mask Tandem Repeat Region ================================================ aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Find is-nt database================================================ Query_seq: SSA_1087:SSA_1088|SSA_1087:SSA_1088:ABC-type transporter (antibiotic resistance protein), ATPase component, putative:hypothetical protein:->->:1106533..1107187 655 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_1087:SSA_1088|SSA_1087:SSA_1088:ABC-type transporter (antibiotic resistance protein), ATPase component, putative:hypothetical protein:->->:1106533..1107187 655 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_1087:SSA_1088|SSA_1087:SSA_1088:ABC-type transporter (antibiotic resistance protein), ATPase component, putative:hypothetical protein:->->:1106533..1107187 655 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 9 End: 581 ........ M F R Q S W L K I F I L A I L A S A L A V F M T A V L V L P S K N G Y L L F D S N I S V I E K M F L V I G T I V F D F L .......................................................................... Protein_Len: 31 Strand: - Start: 501 End: 593 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q F F L L W F M N I F C H Y I V M I L P S C T L L I I L T L M .............................................................. Protein_Len: 39 Strand: - Start: 496 End: 612 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T V S F L S A L V Y K H F L S L N G Y D I A L L D S P Y N L N L Y L R F L K M ........................................... Protein_Len: 43 Strand: - Start: 398 End: 526 ............................................................................................................................................................................................................................................................................................................................................................................................................. E T S G A T K F L L L S A E L F L L L Y L N P I G S G R S I A R I N S F F S F G F C M ................................................................................................................................. Protein_Len: 30 Strand: - Start: 367 End: 456 .............................................................................................................................................................................................................................................................................................................................................................................. Y S V Y K L S K N E N L L D Q L K S S F Y A R K S F S C F M ....................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 240 End: 359 ............................................................................................................................................................................................................................................... R F L P K V E S G K K K S F N R K I T P F F N L P Y I I S N F T N S M I C F I M ........................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 2 End: 205 . N F I N M K A I N A L A R A T K I V A T R T N G D L F P Y K N N S E L I E T I S F I N K T I P V I T K S K R E I K T H M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 77 HP_score: -7.6 Tail_Score: -3.96842 Start: 64 End: 84 Full_Region: TATTGGCGAGTGCTC TTGCAGTC TTTAT GACTGCAG TTCTTGTATTACCAT ...............................................................TTGCAGTCTTTATGACTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -8.9 Tail_Score: -2.97382 Start: 65 End: 83 Full_Region: ATTGGCGAGTGCTCT TGCAGTC TTTAT GACTGCA GTTCTTGTATTACCA ................................................................TGCAGTCTTTATGACTGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 72 HP_score: -5.7 Tail_Score: -4.40561 Start: 248 End: 267 Full_Region: GCGTCTAACGGAACA GGGGTTT TACTTC AGACCCC TTCTTTTTAGAGAAG .......................................................................................................................................................................................................................................................GGGGTTTTACTTCAGACCCC.................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_1087:SSA_1088|SSA_1087:SSA_1088:ABC-type transporter (antibiotic resistance protein), ATPase component, putative:hypothetical protein:->->:1106533..1107187 655 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Intra-Species Hit: Count: 1 Min: 1 Max: 655 Len: 655 Subject: NC_009009_SSA_1087_SSA_1088|ABC-type transporter (antibiotic resistance protein), ATPase component, putative:hypothetical protein|POSITIVE:POSITIVE|[1106533,1107187]|655 HSP 1 e-value: 0.0 bit: 1298.0 Len: 655 Query Start:1 Query End:655 Subject Strand: POSITIVE Subject Start: 1 Subject End: 655 aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct aagaagtagtgtttaggcagagctggttgaaaatattcattttagctatattggcgagtgctcttgcagtctttatgactgcagttcttgtattaccatctaaaaacggatatttgttatttgactccaatatttctgtgattgaaaaaatgtttttagtgataggtacaattgtttttgattttctctctattttagtatggatttgtttgtttagagataaacgttttctgcgtctaacggaacaggggttttacttcagaccccttctttttagagaagtttcgttttatagttgggaagaaattcagaggatagattatagaattgaacgtattcgacattatgcaaaatatcaattattcaataagagacatattttaacgatttgttttcattcagtagatcctgcagttttgaagagaagtaggctcgcttcgagaaagagcaaaagatataagtttggtattcctgaacctctagagattgctcttatgttactgaaaaaagagaagccaaaacatatttatgaaacaatgatagattaccataatcaatggcgagcaagtcagaaggataattaaggttaagatatagtctgaacagtttcatatactgttaatctaaaacctttagagatggaaaggaggcatct Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGAAGUAGUGUUUAGGCAGAGCUGGUUGAAAAUAUUCAUUUUAGCUAUAUUGGCGAGUGCUCUUGCAGUCUUUAUGACUGCAGUUCUUGUAUUACCAUCUAAAAACGGAUAUUUGUUAUUUGACUCCAAUAUUUCUGUGAUUGAAAAAAUGUUUUUAGUGAUAGGUACAAUUGUUUUUGAUUUUCUCUCUAUUUUAGUAUGGAUUUGUUUGUUUAGAGAUAAACGUUUUCUGCGUCUAACGGAACAGGGGUUUUACUUCAGACCCCUUCUUUUUAGAGAAGUUUCGUUUUAUAGUUGGGAAGAAAUUCAGAGGAUAGAUUAUAGAAUUGAACGUAUUCGACAUUAUGCAAAAUAUCAAUUAUUCAAUAAGAGACAUAUUUUAACGAUUUGUUUUCAUUCAGUAGAUCCUGCAGUUUUGAAGAGAAGUAGGCUCGCUUCGAGAAAGAGCAAAAGAUAUAAGUUUGGUAUUCCUGAACCUCUAGAGAUUGCUCUUAUGUUACUGAAAAAAGAGAAGCCAAAACAUAUUUAUGAAACAAUGAUAGAUUACCAUAAUCAAUGGCGAGCAAGUCAGAAGGAUAAUUAAGGUUAAGAUAUAGUCUGAACAGUUUCAUAUACUGUUAAUCUAAAACCUUUAGAGAUGGAAAGGAGGCAUCU .........(((((((((...((..((((((.(..((((......(((((...(((((.(((...((((((.....))))))))).)))))......(((((....((((((.....))))))..(((......(((((.((((((((....)))))))).)))))..........(((((.(((((..(((.....(((.(((..((((((((....))))))))..))))))....((((((((.(((((((......))))))).((((....)))).)))))))).......)))..))))).))))))))))))))))))...))))..).)))))).....))...(((((((((((((..(((((......)))))..((((((((....((((((((.....((((((((..((((......((((...........))))...........(((..(.....)..))))))).)))))))).......)))))))).........((((...(((....)))...........(((((...)))))..)))).))))))))....))))))))........))))).)))))))))(((((.....(((((..(((((.....))))))))))....))))).... (-155.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAUGCCUCCUUUCCAUCUCUAAAGGUUUUAGAUUAACAGUAUAUGAAACUGUUCAGACUAUAUCUUAACCUUAAUUAUCCUUCUGACUUGCUCGCCAUUGAUUAUGGUAAUCUAUCAUUGUUUCAUAAAUAUGUUUUGGCUUCUCUUUUUUCAGUAACAUAAGAGCAAUCUCUAGAGGUUCAGGAAUACCAAACUUAUAUCUUUUGCUCUUUCUCGAAGCGAGCCUACUUCUCUUCAAAACUGCAGGAUCUACUGAAUGAAAACAAAUCGUUAAAAUAUGUCUCUUAUUGAAUAAUUGAUAUUUUGCAUAAUGUCGAAUACGUUCAAUUCUAUAAUCUAUCCUCUGAAUUUCUUCCCAACUAUAAAACGAAACUUCUCUAAAAAGAAGGGGUCUGAAGUAAAACCCCUGUUCCGUUAGACGCAGAAAACGUUUAUCUCUAAACAAACAAAUCCAUACUAAAAUAGAGAGAAAAUCAAAAACAAUUGUACCUAUCACUAAAAACAUUUUUUCAAUCACAGAAAUAUUGGAGUCAAAUAACAAAUAUCCGUUUUUAGAUGGUAAUACAAGAACUGCAGUCAUAAAGACUGCAAGAGCACUCGCCAAUAUAGCUAAAAUGAAUAUUUUCAACCAGCUCUGCCUAAACACUACUUCUU (((((.........)))))...((((((..((((....(((...((((....)))).)))..)))).))))))........(((.(((.(((..(((((.....)))))....(((((((((((.((((((((((((((((.....(((.(((((((....((((((((.......(((((..((....)).))))).......))))))))....((((.(((.....))).))))..............))))))).)))........))))))))))))...)))).)))))).)))))....)))....))))))...((((..((((....(((((..((((..((((................))))....(((((.....((((((.(......).))))))......)))))..))))....(((((....)))))..................))))).))))............(((((..(((((((((((((....((((.......))))....(((...............))))))))))).))))).))))))))).((((((.....)))))).(((((....((.......)).....((((....))))....))))).................. (-124.51) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 356 449 401 186 133 NC_009009:SSA_0479|5end_CbiQ_protein,_putative_480425..480655_POSITIVE 330 287 241 211 161 NC_009009:SSA_0476|5end_Precorrin-2_C20-methyltransferase,_putative_478500..478730_POSITIVE 326 90 45 144 103 NC_009009:SSA_0583|5end_Nucleotidyltransferase,_putative_574505..574735_POSITIVE 324 439 391 195 146 NC_009009:SSA_1840|5end_RNA_binding_protein,_putative_1834422..1834652_NEGATIVE 324 78 43 221 170 NC_009009:SSA_1508|5end_ABC-type_lipopolysaccharide_transport_system,_permease_component,_putative_1513250..1513480_NEGATIVE 323 267 222 220 173 NC_009009:SSA_0960|5end_Sensor_protein_ciaH,_putative_968506..968736_POSITIVE 323 90 42 165 113 NC_009009:SSA_0486|5end_Uroporphyrinogen-III_synthase,_putative_486637..486867_POSITIVE 322 98 56 158 107 NC_009009:SSA_1250|5end_Conserved_uncharacterized_protein,_putative_1274512..1274742_NEGATIVE 307 93 53 75 31 NC_009009:SSA_2033|5end_30S_ribosomal_protein_S9,_putative_2038779..2039009_NEGATIVE 300 60 14 172 130 NC_009009:SSA_1607|5end_Formamidopyrimidine-DNA_glycosylase,_putative_1613255..1613485_NEGATIVE 299 279 231 57 13 NC_009009:SSA_2145|5end_Tributyrin_esterase,_putative_2146658..2146888_NEGATIVE 298 450 402 203 152 NC_009009:SSA_1118|5end_Peptide_methionine_sulfoxide_reductase,_putative_1143322..1143552_POSITIVE 295 453 411 195 147 NC_009009:SSA_1720|5end_Initiation-control_protein,_putative_1707113..1707343_NEGATIVE 295 89 45 104 59 NC_009009:SSA_0335|5end_Phosphomevalonate_kinase,_putative_328792..329022_POSITIVE 295 90 42 174 119 NC_009009:SSA_0279|5end_Sugar-binding_transcriptional_repressor_(DeoR),_putative_272319..272549_POSITIVE 292 279 231 218 157 NC_009009:SSA_0981|5end_3-isopropylmalate_dehydratase_small_subunit,_putative_985396..985626_POSITIVE 288 83 43 158 119 NC_009009:SSA_2080|5end_hypothetical_protein_2085341..2085571_NEGATIVE 288 310 266 45 1 NC_009009:SSA_0751|5end_Oligoendopeptidase_F,_putative_732367..732597_POSITIVE 286 438 395 125 88 NC_009009:SSA_1910|5end_hypothetical_protein_1902672..1902902_NEGATIVE 286 70 21 67 20 NC_009009:SSA_1161|5end_hypothetical_protein_1187383..1187613_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 356 449 401 68 15 NC_009009:SSA_0478|3end_Cobalt_transport_protein_cbiN,_putative_480387..480537_POSITIVE 326 90 45 142 101 NC_009009:SSA_0582|3end_Methylase,_putative_574583..574733_POSITIVE 320 439 396 147 105 NC_009009:SSA_1861|3end_Aminopeptidase_C,_putative_1856568..1856718_NEGATIVE 307 93 53 56 12 NC_009009:SSA_2034|3end_50S_ribosomal_protein_L13,_putative_2038798..2038948_NEGATIVE 300 60 14 144 102 NC_009009:SSA_1608|3end_hypothetical_protein_1613283..1613433_NEGATIVE 295 89 45 114 69 NC_009009:SSA_0334|3end_Diphosphomevalonate_decarboxylase,_putative_328882..329032_POSITIVE 292 74 38 40 3 NC_009009:SSA_0198|3end_Dihydrofolate_synthetase,_putative_198375..198525_POSITIVE 290 74 42 142 102 NC_009009:SSA_0278|3end_Transcriptional_repressor_of_sugar_metabolism,_GlpR/DeoR_family,_putative_272382..272532_POSITIVE 288 83 43 148 109 NC_009009:SSA_2082|3end_Carbohydrate_kinase,_FGGY_family,_putative_2085351..2085501_NEGATIVE 286 438 395 132 95 NC_009009:SSA_1911|3end_Conserved_uncharacterized_protein_1902665..1902815_NEGATIVE 286 90 45 45 1 NC_009009:SSA_1597|3end_hypothetical_protein_1603267..1603417_NEGATIVE 283 90 53 52 2 NC_009009:SSA_0634|3end_Anthranilate_phosphoribosyltransferase,_putative_624471..624621_POSITIVE 282 80 35 130 81 NC_009009:SSA_1332|3end_hypothetical_protein_1347217..1347367_NEGATIVE 279 448 407 141 84 NC_009009:SSA_0459|3end_hypothetical_protein_462513..462663_POSITIVE 277 100 53 126 67 NC_009009:SSA_0900|3end_Tetratricopeptide_repeat_(TPR)_family_protein_892377..892527_POSITIVE 276 433 401 146 107 NC_009009:SSA_1322|3end_Glycosyl_transferase,_putative_1338536..1338686_NEGATIVE 275 100 52 151 98 NC_009009:SSA_0678|3end_Transcriptional_regulator,_ArgR_family,_putative_660785..660935_POSITIVE 275 100 55 92 47 NC_009009:SSA_0480|3end_Cobalt_ABC_transporter,_ATP-binding_protein,_putative_482057..482207_POSITIVE 274 89 42 143 85 NC_009009:SSA_0429|3end_Histidine_ammonia-lyase,_putative_429701..429851_NEGATIVE 274 69 23 148 100 NC_009009:SSA_0087|3end_V-type_sodium_ATPase,_subunit_E,_putative_88999..89149_POSITIVE