Origin IGS:
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
aaacatacctcactttataatttattagtttcattgtaaaccctttcagaaatcttgtcaaaagattaacagaatctcagaaaaaaattttaattttaaaaatttgatgcttctaattatatcactttgtttgttatagcatagaagaaaaaaatcagtcacttctgaccgattttttctatgatttagaaactgttaaattccgctcctgctgcaattttggaatattaaccctctatttcaagaagtaaataaggtaagcctaagatagtcccaagaattcctagcatagcacgaattccagaagcttttacaagtactttttggccattttttacttgaattttatgagacttcataaaactttgtccaacctgtagctcaatactatctccctcacatgacagagttttgctttcattatttgaaagtttatgtacaagttcaccattaagatataccgctactttttgagcaacgccaaccatacccgtatcacgcgtaattgtaatttccgacataactaactcctttgtttttatctatcttattatatcaaatatctaaataaaatacaaaaaccagcctcacgactggttttctacttattt

Mask Tandem Repeat Region ================================================
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt

Find is-nt database================================================
Query_seq: SSA_0571:SSA_0572|SSA_0571:SSA_0572:Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative:Dehydrogenase, putative:->->:566955..567565 611
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: SSA_0571:SSA_0572|SSA_0571:SSA_0572:Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative:Dehydrogenase, putative:->->:566955..567565 611
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: SSA_0571:SSA_0572|SSA_0571:SSA_0572:Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative:Dehydrogenase, putative:->->:566955..567565 611
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Predict ORF larger than 30AA ================================================
Protein_Len: 33	Strand: +	Start: 155	End: 253
.......................................................................................................................................................... M  L  M  V  N  L  Y  I  N  F  Q  I  M  K  A  K  L  C  H  V  R  E  I  V  L  S  Y  R  L  D  K  V  L ......................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 70	End: 381
..................................................................... M  K  T  K  E  L  V  M  S  E  I  T  I  T  R  D  T  G  M  V  G  V  A  Q  K  V  A  V  Y  L  N  G  E  L  V  H  K  L  S  N  N  E  S  K  T  L  S  C  E  G  D  S  I  E  L  Q  V  G  Q  S ......................................................................................................................................................................................................................................
Protein_Len: 34	Strand: +	Start: 450	End: 551
................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M  T  D  F  F  L  L  C  Y  N  K  Q  S  D  I  I  R  S  I  K  F  L  K  L  K  F  F  S  E  I  L  L  I  F ............................................................
Protein_Len: 36	Strand: -	Start: 364	End: 471
........................................................................................................................................................................................................................................................................................................................................................................... K  K  F  Y  L  T  L  I  G  F  N  C  C  S  R  F  K  V  T  E  L  D  Y  F  F  D  T  L  L  S  Q  N  K  E  E  M ............................................................................................................................................
Protein_Len: 38	Strand: -	Start: 141	End: 254
............................................................................................................................................ F  T  A  T  Y  R  L  P  S  S  T  C  L  S  E  F  L  S  L  L  V  R  D  H  S  P  S  L  I  S  S  C  T  P  C  L  K  M .....................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: -	Start: 88	End: 177
....................................................................................... N  H  R  F  N  C  N  R  T  I  R  T  H  N  A  N  S  L  F  Y  R  Y  I  K  I  T  F  K  Y  M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................

aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 87	Start: 550	End: 579
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACAAGATTTCTGAAAGGGTTTACAAT................................
PromScan Matrix: RpoD-17	Strand: +	Score: 85	Start: 33	End: 62
................................TTTGTATTTTATTTAGATATTTGATATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
PromScan Matrix: RpoD-17	Strand: +	Score: 81	Start: 571	End: 600
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACAATGAAACTAATAAATTATAAAGT...........

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 100	HP_score: -6.3	Tail_Score: -5.9218	Start: 440	End: 457	Full_Region: AAATCATAGAAAAAA TCGGTCA GAAG TGACTGA TTTTTTTCTTCTATG
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCAGAAGTGACTGA..........................................................................................................................................................
TransTerm Strand: -	Conf: 77	HP_score: -4.1	Tail_Score: -5.43487	Start: 440	End: 457	Full_Region: catagaagaaaaaaa tcagtca cttc tgaccga ttttttctatgattt
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................tcagtcacttctgaccga..........................................................................................................................................................
TransTerm Strand: +	Conf: 75	HP_score: -2.5	Tail_Score: -5.63504	Start: 511	End: 524	Full_Region: TTAGAAGCATCAAAT TTTTA AAAT TAAAA TTTTTTTCTGAGATT
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAATTAAAA.......................................................................................

Find igs database================================================
Query_seq: SSA_0571:SSA_0572|SSA_0571:SSA_0572:Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative:Dehydrogenase, putative:->->:566955..567565 611
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
Intra-Species Hit: Count: 1	Min: 1	Max: 611	Len: 611
Subject: NC_009009_SSA_0571_SSA_0572|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative:Dehydrogenase, putative|POSITIVE:POSITIVE|[566955,567565]|611
HSP  1	e-value: 0.0	bit: 1128.0	Len: 611	Query Start:1	Query End:611	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 611
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgannnnnnncttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaannnnnnnctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt
aaataagtagaaaaccagtcgtgaggctggtttttgtattttatttagatatttgatataataagatagataaaaacaaaggagttagttatgtcggaaattacaattacgcgtgatacgggtatggttggcgttgctcaaaaagtagcggtatatcttaatggtgaacttgtacataaactttcaaataatgaaagcaaaactctgtcatgtgagggagatagtattgagctacaggttggacaaagttttatgaagtctcataaaattcaagtaaaaaatggccaaaaagtacttgtaaaagcttctggaattcgtgctatgctaggaattcttgggactatcttaggcttaccttatttacttcttgaaatagagggttaatattccaaaattgcagcaggagcggaatttaacagtttctaaatcatagaaaaaatcggtcagaagtgactgatttttttcttctatgctataacaaacaaagtgatataattagaagcatcaaatttttaaaattaaaatttttttctgagattctgttaatcttttgacaagatttctgaaagggtttacaatgaaactaataaattataaagtgaggtatgttt

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAAUAAGUAGAAAACCAGUCGUGAGGCUGGUUUUUGUAUUUUAUUUAGAUAUUUGAUAUAAUAAGAUAGAUAAAAACAAAGGAGUUAGUUAUGUCGGAAAUUACAAUUACGCGUGAUACGGGUAUGGUUGGCGUUGCUCAAAAAGUAGCGGUAUAUCUUAAUGGUGAACUUGUACAUAAACUUUCAAAUAAUGAAAGCAAAACUCUGUCAUGUGAGGGAGAUAGUAUUGAGCUACAGGUUGGACAAAGUUUUAUGAAGUCUCAUAAAAUUCAAGUAAAAAAUGGCCAAAAAGUACUUGUAAAAGCUUCUGGAAUUCGUGCUAUGCUAGGAAUUCUUGGGACUAUCUUAGGCUUACCUUAUUUACUUCUUGAAAUAGAGGGUUAAUAUUCCAAAAUUGCAGCAGGAGCGGAAUUUAACAGUUUCUAAAUCAUAGAAAAAAUCGGUCAGAAGUGACUGAUUUUUUUCUUCUAUGCUAUAACAAACAAAGUGAUAUAAUUAGAAGCAUCAAAUUUUUAAAAUUAAAAUUUUUUUCUGAGAUUCUGUUAAUCUUUUGACAAGAUUUCUGAAAGGGUUUACAAUGAAACUAAUAAAUUAUAAAGUGAGGUAUGUUU
(((((((..(((((((((((....)))))))))))....)))))))...............((((((((..........(((((((..(((((.((.............)))))))(((((((((..(((((.(((..(((...(((((.((.((((.....)))).))..((((.....((((((.....)))))).....((((.((....)).))))...))))...)))))...)))..))).(((((((((....)))))))))..............)))))...)))))))))..))))))).((((((.(((...)).).))))))......)))))))).((.((((((((((.(((((......)))))(((((.(((((....(((...)))....)))))))))).((((((((..((((((((((((((((((....)))))))))))....))))))).((((.((.......)).)))).))))))))..................((((((((((..(((((..((((((....))))))..))))).))))))))))......................)))))))))).)).. (-154.32)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAACAUACCUCACUUUAUAAUUUAUUAGUUUCAUUGUAAACCCUUUCAGAAAUCUUGUCAAAAGAUUAACAGAAUCUCAGAAAAAAAUUUUAAUUUUAAAAAUUUGAUGCUUCUAAUUAUAUCACUUUGUUUGUUAUAGCAUAGAAGAAAAAAAUCAGUCACUUCUGACCGAUUUUUUCUAUGAUUUAGAAACUGUUAAAUUCCGCUCCUGCUGCAAUUUUGGAAUAUUAACCCUCUAUUUCAAGAAGUAAAUAAGGUAAGCCUAAGAUAGUCCCAAGAAUUCCUAGCAUAGCACGAAUUCCAGAAGCUUUUACAAGUACUUUUUGGCCAUUUUUUACUUGAAUUUUAUGAGACUUCAUAAAACUUUGUCCAACCUGUAGCUCAAUACUAUCUCCCUCACAUGACAGAGUUUUGCUUUCAUUAUUUGAAAGUUUAUGUACAAGUUCACCAUUAAGAUAUACCGCUACUUUUUGAGCAACGCCAACCAUACCCGUAUCACGCGUAAUUGUAAUUUCCGACAUAACUAACUCCUUUGUUUUUAUCUAUCUUAUUAUAUCAAAUAUCUAAAUAAAAUACAAAAACCAGCCUCACGACUGGUUUUCUACUUAUUU
.....(((((...(((((((((((.(((((((..................((((((.....))))))....(((((..((((..(((((((.......)))))))....((((((.(((((.((.......)).)))))..))))))...((((((.((((....)))).))))))))))..))))).))))))).))))))..((.......))..((((((((((.........)))))))))).)))))..)))))....((((((((......((((((...((...))..))))))..((((...((((((.......(((((...............(((((((......)))))))..(((..(((...(((((..........(((..((....))..)))....(((((((.....)))))))..............................)))))...)))..))).)))))...(((.((.....)).))).))))))))))...........................))))))))...........................((((((((........)))))))).......... (-100.90)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
393	137	94	231	180	NC_009009:SSA_1850|5end_DNA-directed_RNA_polymerase,_subunit_K/omega,_putative_1846024..1846254_NEGATIVE
300	140	92	90	33	NC_009009:SSA_2136|5end_50S_ribosomal_protein_L34,_putative_2137641..2137871_NEGATIVE
299	368	326	141	91	NC_009009:SSA_1269|5end_hypothetical_protein_1293352..1293582_NEGATIVE
297	330	282	67	22	NC_009009:SSA_1487|5end_Conserved_uncharacterized_protein_1494190..1494420_NEGATIVE
292	152	112	37	1	NC_009009:SSA_0568|5end_Aspartyl-tRNA_synthetase_1,_putative_561674..561904_POSITIVE
291	260	213	200	146	NC_009009:SSA_1859|5end_Penicillin-binding_protein-like_factor_A/_recombinase,_putative_1853704..1853934_POSITIVE
290	348	303	80	30	NC_009009:SSA_0485|5end_Porphobilinogen_deaminase,_putative_485732..485962_POSITIVE
289	470	421	191	145	NC_009009:SSA_0097|5end_Multi_antimicrobial_extrusion_(MATE)_family_transporter,_putative_98148..98378_POSITIVE
287	357	312	166	118	NC_009009:SSA_1972|5end_Two-component_system_transcriptional_regulator_(CheY_domain_and_HTH-like_DNA-binding_domain),_putative_1968410..1968640_NEGATIVE
285	445	401	222	174	NC_009009:SSA_1034|5end_Conserved_uncharacterized_protein_1049585..1049815_POSITIVE
283	59	11	212	155	NC_009009:SSA_2143|5end_Conserved_uncharacterized_protein_2144225..2144455_NEGATIVE
281	369	323	199	156	NC_009009:SSA_0998|5end_hypothetical_protein_998487..998717_POSITIVE
280	150	108	207	162	NC_009009:SSA_1254|5end_hypothetical_protein_1281484..1281714_NEGATIVE
280	250	203	217	163	NC_009009:SSA_0162|5end_hypothetical_protein_161391..161621_POSITIVE
280	135	92	87	43	NC_009009:SSA_0116|5end_30S_ribosomal_protein_S17,_putative_112632..112862_POSITIVE
279	419	377	163	115	NC_009009:SSA_2132|5end_Ure_cluster_protein,_putative_2134170..2134400_POSITIVE
279	152	111	55	10	NC_009009:SSA_1348|5end_hypothetical_protein_1365355..1365585_POSITIVE
279	170	121	221	167	NC_009009:SSA_0861|5end_hypothetical_protein_852977..853207_NEGATIVE
276	328	282	83	33	NC_009009:SSA_1304|5end_hypothetical_protein_1323449..1323679_NEGATIVE
275	158	111	54	2	NC_009009:SSA_0387|5end_Transcriptional_regulator,_GntR_family,_putative_382343..382573_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
332	157	114	150	100	NC_009009:SSA_0848|3end_Pyruvate_kinase_I,_fructose-stimulated,_putative_836024..836174_POSITIVE
299	46	5	96	53	NC_009009:SSA_1895|3end_Ribosome-binding_factor_A,_putative_1890815..1890965_NEGATIVE
297	330	282	49	4	NC_009009:SSA_1488|3end_Multiple_antibiotic_resistance_operon_transcription_repressor_(MarR),_putative_1494208..1494358_NEGATIVE
290	348	303	93	43	NC_009009:SSA_0484|3end_Glutamyl-tRNA_reductase,_putative_485825..485975_POSITIVE
289	470	421	82	36	NC_009009:SSA_0095|3end_Threonine_synthase,_putative_98119..98269_POSITIVE
283	59	11	122	65	NC_009009:SSA_2144|3end_Glutamyl-tRNA_synthetase,_putative_2144315..2144465_NEGATIVE
281	359	315	87	40	NC_009009:SSA_2079|3end_Acetyltransferase,_putative_2084599..2084749_POSITIVE
281	347	303	131	93	NC_009009:SSA_1962|3end_Amino_acid_ABC_transporter,_ATP-binding_protein,_putative_1960930..1961080_POSITIVE
281	467	421	86	44	NC_009009:SSA_1521|3end_Phosphoenolpyruvate_carboxylase,_putative_1527837..1527987_NEGATIVE
280	135	92	63	19	NC_009009:SSA_0115|3end_50S_ribosomal_protein_L29,_putative_112688..112838_POSITIVE
277	467	426	50	8	NC_009009:SSA_0573|3end_hypothetical_protein_568616..568766_NEGATIVE
274	356	313	54	10	NC_009009:SSA_0197|3end_Dihydropteroate_synthase,_putative_196979..197129_POSITIVE
272	423	397	138	111	NC_009009:SSA_0351|3end_Signal_peptidase_I,_putative_344278..344428_NEGATIVE
271	349	306	72	26	NC_009009:SSA_1465|3end_Conserved_uncharacterized_protein_1471648..1471798_NEGATIVE
271	139	92	109	47	NC_009009:SSA_0470|3end_Precorrin-4_methylase,_putative_473732..473882_POSITIVE
271	159	111	131	84	NC_009009:SSA_0414|3end_hypothetical_protein_410569..410719_POSITIVE
270	48	5	55	13	NC_009009:SSA_1943|3end_Aspartate_kinase,_putative_1930159..1930309_POSITIVE
270	240	195	81	40	NC_009009:SSA_0696|3end_hypothetical_protein_679920..680070_POSITIVE
269	349	302	94	48	NC_009009:SSA_2063|3end_Aminopeptidase_PepS,_putative_2063616..2063766_NEGATIVE
268	342	305	139	96	NC_009009:SSA_1318|3end_GTP-binding_protein_lepA,_putative_1333989..1334139_NEGATIVE