Origin IGS: gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gagaaaaagtccttatttactttctttaaatcaaaaagtgctaaggttgcttagcacttttttgactctttcatattctaacactggaaaaacttcattgaatcgccggacttaaaagataacctcaaacagagactctagaatttcaaaaatataatcacttaccataggtcacctccattttctgagctttcttaaatgtcttcggatagtggactttgattgtaactttcatagcttttacctcgcttatcattcattctttaagagcaaaaacgaaactcttggagcgtttgacctcaagtttggtccctaatctttttgttcttacttggatataaggatacagccctaaacttaagaatctcttatagttttcttagggaaagcttataatcaaagaagtccggcagcaatccttacctactaattgaaacgaacaagtcttttcaattaaatacaaaaaaacttcaccaattgggtgaagcttgtgatttgttaggagatttatgatgaaaaaattctaaattattctttgagaaacacatacctcgcaggtcttctagtcttcaagctttgattacaggattttaagggatgtttacattgtcattggtcccacctctttctttgatttgacaatagtataatccctcaaacttaaagcctacttataaataacttgcaggaaacttaatccaaagaactc Mask Tandem Repeat Region ================================================ gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Find is-nt database================================================ Query_seq: SSA_0549:SSA_0551|SSA_0549:SSA_0551:ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative:L-asparaginase, putative:-><-:545712..546420 709 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0549:SSA_0551|SSA_0549:SSA_0551:ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative:L-asparaginase, putative:-><-:545712..546420 709 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0549:SSA_0551|SSA_0549:SSA_0551:ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative:L-asparaginase, putative:-><-:545712..546420 709 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 196 End: 327 ................................................................................................................................................................................................... M I N L L T N H K L H P I G E V F L Y L I E K T C S F Q L V G K D C C R T S L I I S F P .............................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 361 End: 450 ........................................................................................................................................................................................................................................................................................................................................................................ M Y P Y I Q V R T K R L G T K L E V K R S K S F V F A L K E ................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 454 End: 549 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I S E V K A M K V T I K V H Y P K T F K K A Q K M E V T Y G K ................................................................................................................................................................ Protein_Len: 49 Strand: - Start: 397 End: 543 ............................................................................................................................................................................................................................................................................................................................................................................................................ P G F K L D F A G L T E N K S K F F S H Y A L Y F S H F N C D F D V I R L C K L F S L F H L H G M ...................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 372 End: 491 ................................................................................................................................................................................................................................................................................................................................................................................... I W T L V F L N P V L S S T L R E L L K T K A R L S H I I L S T F A I F T V I M .......................................................................................................................................................................................................................... gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 59 HP_score: -5.4 Tail_Score: -3.68962 Start: 222 End: 242 Full_Region: attaaatacaaaaaa acttcacc aattg ggtgaagc ttgtgatttgttagg .............................................................................................................................................................................................................................acttcaccaattgggtgaagc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -8.9 Tail_Score: -5.88197 Start: 223 End: 241 Full_Region: CTAACAAATCACAAG CTTCACC CAATT GGTGAAG TTTTTTTGTATTTAA ..............................................................................................................................................................................................................................CTTCACCCAATTGGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 47 HP_score: -3.5 Tail_Score: -3.18383 Start: 257 End: 279 Full_Region: TTTTTTTGTATTTAA TTGAAAAGA CTTGT TCGTTTCAA TTAGTAGGTAAGGAT ................................................................................................................................................................................................................................................................TTGAAAAGACTTGTTCGTTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 45 HP_score: -3.5 Tail_Score: -3.05384 Start: 257 End: 279 Full_Region: atccttacctactaa ttgaaacga acaag tcttttcaa ttaaatacaaaaaaa ................................................................................................................................................................................................................................................................ttgaaacgaacaagtcttttcaa.............................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -10.8 Tail_Score: -4.98531 Start: 653 End: 672 Full_Region: GAAAGAGTCAAAAAA GTGCTAAG CAAC CTTAGCAC TTTTTGATTTAAAGA ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGCAACCTTAGCAC..................................... Find igs database================================================ Query_seq: SSA_0549:SSA_0551|SSA_0549:SSA_0551:ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative:L-asparaginase, putative:-><-:545712..546420 709 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Intra-Species Hit: Count: 1 Min: 1 Max: 709 Len: 709 Subject: NC_009009_SSA_0549_SSA_0551|ATP-dependent DNA helicase recG, transcription-repair coupling factor, putative:L-asparaginase, putative|POSITIVE:NEGATIVE|[545712,546420]|709 HSP 1 e-value: 0.0 bit: 1364.0 Len: 709 Query Start:1 Query End:709 Subject Strand: POSITIVE Subject Start: 1 Subject End: 709 gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagnnnnnnngtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc gagttctttggattaagtttcctgcaagttatttataagtaggctttaagtttgagggattatactattgtcaaatcaaagaaagaggtgggaccaatgacaatgtaaacatcccttaaaatcctgtaatcaaagcttgaagactagaagacctgcgaggtatgtgtttctcaaagaataatttagaattttttcatcataaatctcctaacaaatcacaagcttcacccaattggtgaagtttttttgtatttaattgaaaagacttgttcgtttcaattagtaggtaaggattgctgccggacttctttgattataagctttccctaagaaaactataagagattcttaagtttagggctgtatccttatatccaagtaagaacaaaaagattagggaccaaacttgaggtcaaacgctccaagagtttcgtttttgctcttaaagaatgaatgataagcgaggtaaaagctatgaaagttacaatcaaagtccactatccgaagacatttaagaaagctcagaaaatggaggtgacctatggtaagtgattatatttttgaaattctagagtctctgtttgaggttatcttttaagtccggcgattcaatgaagtttttccagtgttagaatatgaaagagtcaaaaaagtgctaagcaaccttagcactttttgatttaaagaaagtaaataaggactttttctc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAGUUCUUUGGAUUAAGUUUCCUGCAAGUUAUUUAUAAGUAGGCUUUAAGUUUGAGGGAUUAUACUAUUGUCAAAUCAAAGAAAGAGGUGGGACCAAUGACAAUGUAAACAUCCCUUAAAAUCCUGUAAUCAAAGCUUGAAGACUAGAAGACCUGCGAGGUAUGUGUUUCUCAAAGAAUAAUUUAGAAUUUUUUCAUCAUAAAUCUCCUAACAAAUCACAAGCUUCACCCAAUUGGUGAAGUUUUUUUGUAUUUAAUUGAAAAGACUUGUUCGUUUCAAUUAGUAGGUAAGGAUUGCUGCCGGACUUCUUUGAUUAUAAGCUUUCCCUAAGAAAACUAUAAGAGAUUCUUAAGUUUAGGGCUGUAUCCUUAUAUCCAAGUAAGAACAAAAAGAUUAGGGACCAAACUUGAGGUCAAACGCUCCAAGAGUUUCGUUUUUGCUCUUAAAGAAUGAAUGAUAAGCGAGGUAAAAGCUAUGAAAGUUACAAUCAAAGUCCACUAUCCGAAGACAUUUAAGAAAGCUCAGAAAAUGGAGGUGACCUAUGGUAAGUGAUUAUAUUUUUGAAAUUCUAGAGUCUCUGUUUGAGGUUAUCUUUUAAGUCCGGCGAUUCAAUGAAGUUUUUCCAGUGUUAGAAUAUGAAAGAGUCAAAAAAGUGCUAAGCAACCUUAGCACUUUUUGAUUUAAAGAAAGUAAAUAAGGACUUUUUCUC ..((((((((((........((((((.(((.((((....((((((((...((((((((((..(((.(((((((..((.......))((.....))..))))))))))...))))))))))...........)))))))).....)))).))).))).)))........)).))))))))......(((...((((((....((((((((((((((....((((((((((.....)))))))))).)))))...(((((((((.((.....)).))))))))).))))...)))))..((((((((((((((((((...(((((((.......(((((.((((.....)))))))))..((((....((((.((((((..(((((.((((((((.....((((........))))....((((...)))).)).)))))).))))).....))...))))...))))....))))..)))))))..))))))))..........((.(((.((((((..(((((((((.((((.(....))))).((((....))))..........)))).))).))...))))))))).))....)))))))))).....))))))...)))..............(((((((((.(((((((((((((....))))))))))))).(((((.......)))))...))))))))).. (-175.93) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAGAAAAAGUCCUUAUUUACUUUCUUUAAAUCAAAAAGUGCUAAGGUUGCUUAGCACUUUUUUGACUCUUUCAUAUUCUAACACUGGAAAAACUUCAUUGAAUCGCCGGACUUAAAAGAUAACCUCAAACAGAGACUCUAGAAUUUCAAAAAUAUAAUCACUUACCAUAGGUCACCUCCAUUUUCUGAGCUUUCUUAAAUGUCUUCGGAUAGUGGACUUUGAUUGUAACUUUCAUAGCUUUUACCUCGCUUAUCAUUCAUUCUUUAAGAGCAAAAACGAAACUCUUGGAGCGUUUGACCUCAAGUUUGGUCCCUAAUCUUUUUGUUCUUACUUGGAUAUAAGGAUACAGCCCUAAACUUAAGAAUCUCUUAUAGUUUUCUUAGGGAAAGCUUAUAAUCAAAGAAGUCCGGCAGCAAUCCUUACCUACUAAUUGAAACGAACAAGUCUUUUCAAUUAAAUACAAAAAAACUUCACCAAUUGGGUGAAGCUUGUGAUUUGUUAGGAGAUUUAUGAUGAAAAAAUUCUAAAUUAUUCUUUGAGAAACACAUACCUCGCAGGUCUUCUAGUCUUCAAGCUUUGAUUACAGGAUUUUAAGGGAUGUUUACAUUGUCAUUGGUCCCACCUCUUUCUUUGAUUUGACAAUAGUAUAAUCCCUCAAACUUAAAGCCUACUUAUAAAUAACUUGCAGGAAACUUAAUCCAAAGAACUC ..((((.((((...(((((.......))))).(((((((((((((....))))))))))))).)))).))))............(((((....((((((((((((((((((((.........((.(....((((((((.((((...........(((....))).....((......))...))))))).)))))....((((....))))).)).(((((((((((((((((..............(((((((......(((.((((((((((((.((..(((...))).....((((........)))).....))))))))))))))...)))......)))).)))......((((((((.((.....))..))))))))))))).))))))))))))))))))))).....((((.((....(((((((((.((.....)).)))))))))..(((((.....(((((((.....))))))).)))))....)).)))))))))..))))))....))))).....(((((((.((........(((.((((((....(((((..........))))).(((.(((((((((((...((((((((((..((((..............))))))))))).)))..))))))......))))))))...........)))))))))........)))))))))... (-167.23) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 367 329 282 61 6 NC_009009:SSA_0835|5end_Accessory_secretory_protein_Asp3,_putative_821036..821266_POSITIVE 301 551 515 73 39 NC_009009:SSA_0424|5end_Exopolysaccharide_biosynthesis_protein,_putative_422233..422463_NEGATIVE 297 537 498 173 135 NC_009009:SSA_0697|5end_hypothetical_protein_680083..680313_POSITIVE 296 400 358 126 83 NC_009009:SSA_0866|5end_Cation-transporting_ATPase,_E1-E_2_family,_putative_856983..857213_POSITIVE 295 328 283 212 138 NC_009009:SSA_2090|5end_Hexulose-6-phosphate_synthase,_putative_2095038..2095268_NEGATIVE 292 308 264 162 106 NC_009009:SSA_1383|5end_Aspartate_aminotransferase,_putative_1401718..1401948_NEGATIVE 290 178 144 202 168 NC_009009:SSA_1572|5end_hypothetical_protein_1575908..1576138_NEGATIVE 289 444 409 173 131 NC_009009:SSA_2123|5end_Dimethyladenosine_transferase,_putative_2128536..2128766_NEGATIVE 289 328 285 81 46 NC_009009:SSA_0736|5end_Catabolite_gene_activator_and_regulatory_subunit_of_cAMP-dependent_protein_kinases,_putative_717648..717878_POSITIVE 289 304 262 182 126 NC_009009:SSA_0490|5end_Cobalamin_5'-phosphate_synthase,_putative_490236..490466_POSITIVE 281 440 399 169 115 NC_009009:SSA_1932|5end_Biotin_carboxylase,_putative_1920874..1921104_NEGATIVE 278 443 406 100 56 NC_009009:SSA_2270|5end_Aspartyl-tRNA_synthetase,_putative_2272068..2272298_NEGATIVE 277 626 585 191 134 NC_009009:SSA_0758|5end_Ornithine_acetyltransferase_/_amino-acid_acetyltransferase,_putative_740636..740866_POSITIVE 275 172 132 100 56 NC_009009:SSA_2160|5end_Deoxyuridinetriphosphatase,_putative_2160066..2160296_NEGATIVE 275 230 185 127 78 NC_009009:SSA_0568|5end_Aspartyl-tRNA_synthetase_1,_putative_561674..561904_POSITIVE 275 433 392 73 29 NC_009009:SSA_0498|5end_ABC-type_dipeptide/oligopeptide/nickel_transport_systems,_permease_components,_putative_497910..498140_POSITIVE 272 66 21 209 148 NC_009009:SSA_0836|5end_SecA-like_protein,_putative_821508..821738_POSITIVE 271 440 396 213 174 NC_009009:SSA_1364|5end_hypothetical_protein_1381297..1381527_NEGATIVE 270 444 406 101 47 NC_009009:SSA_1326|5end_Peptidase_T,_putative_1342432..1342662_POSITIVE 269 429 393 160 126 NC_009009:SSA_2220|5end_Galactosyltransferase,_putative_2221439..2221669_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 367 329 282 64 9 NC_009009:SSA_0834|3end_Accessory_secretory_protein_Asp2,_putative_821119..821269_POSITIVE 301 551 515 76 42 NC_009009:SSA_0425|3end_Glycosyltransferase,_putative_422230..422380_NEGATIVE 299 440 396 111 70 NC_009009:SSA_2068|3end_Superfamily_I_DNA_and_RNA_helicases,_putative_2070931..2071081_NEGATIVE 290 178 144 56 22 NC_009009:SSA_1573|3end_hypothetical_protein_1576054..1576204_NEGATIVE 281 440 399 150 96 NC_009009:SSA_1933|3end_(3R)-hydroxymyristoyl-[acyl_carrier_protein]_dehydratase,_putative_1920893..1921043_NEGATIVE 280 443 409 151 110 NC_009009:SSA_2124|3end_Dehydrogenase,_eukaryotic-like,_putative_2128557..2128707_NEGATIVE 275 433 392 80 36 NC_009009:SSA_0497|3end_Nickel_ABC_transporter,_putative_497997..498147_POSITIVE 274 313 271 115 71 NC_009009:SSA_1797|3end_Aminodeoxychorismate_lyase,_putative_1778448..1778598_NEGATIVE 273 322 290 151 119 NC_009009:SSA_0725|3end_hypothetical_protein_710812..710962_POSITIVE 270 328 283 91 40 NC_009009:SSA_0068|3end_Alcohol-acetaldehyde_dehydrogenase,_putative_72848..72998_POSITIVE 269 429 393 144 110 NC_009009:SSA_2221|3end_Cps9E,_putative_2221455..2221605_NEGATIVE 269 546 520 52 18 NC_009009:SSA_0928|3end_ABC-type_multidrug_transporter,_ATPase_and_permease_components,_putative_938525..938675_POSITIVE 264 173 141 45 10 NC_009009:SSA_0582|3end_Methylase,_putative_574583..574733_POSITIVE 262 414 374 58 22 NC_009009:SSA_1024|3end_Alpha-amylase,_putative_1041182..1041332_NEGATIVE 261 629 585 69 12 NC_009009:SSA_0480|3end_Cobalt_ABC_transporter,_ATP-binding_protein,_putative_482057..482207_POSITIVE 260 169 124 60 12 NC_009009:SSA_2298|3end_Serine_protease_containing_a_PDZ_domain,_putative_2299569..2299719_NEGATIVE 260 640 598 64 21 NC_009009:SSA_1669|3end_hypothetical_protein_1668095..1668245_NEGATIVE 259 609 561 147 88 NC_009009:SSA_0989|3end_Conserved_protein,_possible_transcriptional_regulator_(sigma-70,_region_4),_putative_991816..991966_POSITIVE 257 690 644 60 9 NC_009009:SSA_0421|3end_Phosphoglycerate_mutase_family_protein,_putative_420240..420390_POSITIVE 256 328 290 55 16 NC_009009:SSA_2044|3end_Cysteinyl-tRNA_synthetase,_putative_2047066..2047216_NEGATIVE