Origin IGS: caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cttttctcctttctgttgtatctatttttaaacaaaaagaaactatatgaaaataagactgctcccctacacacgtcacagcattttcacatagcttcattgcttatttatcttcagtacccctttgtactatattgaattataacacaaaagcgctttcatggcaatgaaaaagtcattaatataagaaatttttagtgccgcatctcacagcaaaggcaagcttatttgaagaattaaatttttattaaaatttagttcattttccttgtaattccctgtgaaaggtgttacaatctagttactaggaaattgattttagtacttttaaggatatggaagtctggtgtaaatccagcgcggtcccgccactgtgataagcttttcagctttaagtcaggtctttattcttaaattttagtagatttcatgcctcgatgtaaggtagtgatgtcagtttggaacaaacattttagcttagtttccattattgactctacgtttaagtacgttaattttctaaagatgaggtttcacttgtctttctgcaaaggagcagagtcaataattggaaagctagtgctaatcaacgaagcttagcataaagatacaatgatgtataggcggctttctttttttagaaaatcaaaataagttctgtccttccaagacttggtaaagtcaatttggaaagacagaactttttctgtttctttttg Mask Tandem Repeat Region ================================================ caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Find is-nt database================================================ Query_seq: SSA_0513:SSA_0514|SSA_0513:SSA_0514:ATP:cob(I)alamin adenosyltransferase, putative:PduQ protein, putative:->->:512298..513016 719 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0513:SSA_0514|SSA_0513:SSA_0514:ATP:cob(I)alamin adenosyltransferase, putative:PduQ protein, putative:->->:512298..513016 719 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0513:SSA_0514|SSA_0513:SSA_0514:ATP:cob(I)alamin adenosyltransferase, putative:PduQ protein, putative:->->:512298..513016 719 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 22 End: 120 ..................... M S F Q I D F T K S W K D R T Y F D F L K K E S R L Y I I V S L C ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 193 End: 306 ................................................................................................................................................................................................ M F R K L T Y L N V E S I M E T K L K C L F Q T D I T T L H R G M K S T K I ............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 331 End: 426 .......................................................................................................................................................................................................................................................................................................................................... M K S L S Q W R D R A G F T P D F H I L K S T K I N F L V T R L ..................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 620 End: 718 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K L C E N A V T C V G E Q S Y F H I V S F C L K I D T T E R R K . Protein_Len: 41 Strand: - Start: 585 End: 707 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y L V F P Y Q L Y I L L S A I H F H Q S T H L P A T K N E Y L K K K N L F L Y L M ............ Protein_Len: 50 Strand: - Start: 309 End: 458 .................................................................................................................................................................................................................................................................................................................... S Y L G S K F S F L K D C H R S R A P N V G S K W I R L L V L I L K R T V L N Y C R E C P I V L F M ..................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 123 End: 305 .......................................................................................................................... E N I L V L K G I I S E A G K C F S L H F R M K L F N V Y K F T S D I I S V L S F H K N W V S M V V K C R P M F D V L M .............................................................................................................................................................................................................................................................................................................................................................................................................................. caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 92 Start: 552 End: 581 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCATGAAAGCGCTTTTGTGTTATAAT.......................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 423 End: 452 ......................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATTCCCTGTGAAAGGTGTTACAAT........................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 77 HP_score: -6.0 Tail_Score: -4.73108 Start: 16 End: 68 Full_Region: CAAAAAGAAACAGAA AAAGTTCTGTCTTTCCAAATTG ACTTTAC CAAGTCTTGGAAGGACAGAACTTA TTTTGATTTTCTAAA ...............AAAGTTCTGTCTTTCCAAATTGACTTTACCAAGTCTTGGAAGGACAGAACTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 81 HP_score: -7.7 Tail_Score: -4.44748 Start: 19 End: 65 Full_Region: AAAGAAACAGAAAAA GTTCTGTCTTTCCAAATTG ACTTTAC CAAGTCTTGGAAGGACAGAAC TTATTTTGATTTTCT ..................GTTCTGTCTTTCCAAATTGACTTTACCAAGTCTTGGAAGGACAGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 89 HP_score: -6.9 Tail_Score: -5.30448 Start: 19 End: 65 Full_Region: agaaaatcaaaataa gttctgtccttccaagacttggt aaa gtcaatttggaaagacagaac tttttctgtttcttt ..................gttctgtccttccaagacttggtaaagtcaatttggaaagacagaac.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 70 HP_score: -8.0 Tail_Score: -3.30584 Start: 459 End: 486 Full_Region: gcaagcttatttgaa gaattaaatttt tatt aaaatttagttc attttccttgtaatt ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaattaaatttttattaaaatttagttc......................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_0513:SSA_0514|SSA_0513:SSA_0514:ATP:cob(I)alamin adenosyltransferase, putative:PduQ protein, putative:->->:512298..513016 719 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Intra-Species Hit: Count: 1 Min: 1 Max: 719 Len: 719 Subject: NC_009009_SSA_0513_SSA_0514|ATP:cob(I)alamin adenosyltransferase, putative:PduQ protein, putative|POSITIVE:POSITIVE|[512298,513016]|719 HSP 1 e-value: 0.0 bit: 1384.0 Len: 719 Query Start:1 Query End:719 Subject Strand: POSITIVE Subject Start: 1 Subject End: 719 caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctnnnnnnngaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag caaaaagaaacagaaaaagttctgtctttccaaattgactttaccaagtcttggaaggacagaacttattttgattttctaaaaaaagaaagccgcctatacatcattgtatctttatgctaagcttcgttgattagcactagctttccaattattgactctgctcctttgcagaaagacaagtgaaacctcatctttagaaaattaacgtacttaaacgtagagtcaataatggaaactaagctaaaatgtttgttccaaactgacatcactaccttacatcgaggcatgaaatctactaaaatttaagaataaagacctgacttaaagctgaaaagcttatcacagtggcgggaccgcgctggatttacaccagacttccatatccttaaaagtactaaaatcaatttcctagtaactagattgtaacacctttcacagggaattacaaggaaaatgaactaaattttaataaaaatttaattcttcaaataagcttgcctttgctgtgagatgcggcactaaaaatttcttatattaatgactttttcattgccatgaaagcgcttttgtgttataattcaatatagtacaaaggggtactgaagataaataagcaatgaagctatgtgaaaatgctgtgacgtgtgtaggggagcagtcttattttcatatagtttctttttgtttaaaaatagatacaacagaaaggagaaaag Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAAAAAGAAACAGAAAAAGUUCUGUCUUUCCAAAUUGACUUUACCAAGUCUUGGAAGGACAGAACUUAUUUUGAUUUUCUAAAAAAAGAAAGCCGCCUAUACAUCAUUGUAUCUUUAUGCUAAGCUUCGUUGAUUAGCACUAGCUUUCCAAUUAUUGACUCUGCUCCUUUGCAGAAAGACAAGUGAAACCUCAUCUUUAGAAAAUUAACGUACUUAAACGUAGAGUCAAUAAUGGAAACUAAGCUAAAAUGUUUGUUCCAAACUGACAUCACUACCUUACAUCGAGGCAUGAAAUCUACUAAAAUUUAAGAAUAAAGACCUGACUUAAAGCUGAAAAGCUUAUCACAGUGGCGGGACCGCGCUGGAUUUACACCAGACUUCCAUAUCCUUAAAAGUACUAAAAUCAAUUUCCUAGUAACUAGAUUGUAACACCUUUCACAGGGAAUUACAAGGAAAAUGAACUAAAUUUUAAUAAAAAUUUAAUUCUUCAAAUAAGCUUGCCUUUGCUGUGAGAUGCGGCACUAAAAAUUUCUUAUAUUAAUGACUUUUUCAUUGCCAUGAAAGCGCUUUUGUGUUAUAAUUCAAUAUAGUACAAAGGGGUACUGAAGAUAAAUAAGCAAUGAAGCUAUGUGAAAAUGCUGUGACGUGUGUAGGGGAGCAGUCUUAUUUUCAUAUAGUUUCUUUUUGUUUAAAAAUAGAUACAACAGAAAGGAGAAAAG .....((((((((((.(((((((((((((((((...(((((....)))))))))))))))))))))).)))))..))))).....((((..(((.((((((((((((.((((.((((((...((((((((((.(((((..(((.((((((.(((((((((((((..((((....))))..(((((........((....)).........)))))....)))))))))))))))))))))).)))))..((((((((........................(((.(((((((((........(((.((((((...((..(((.....(((((....))))).(((((((((((((......((((.......))))..((((...........(((((((............)))).)))...((((((..(((......)))..))))))))))...(((.((((((((....)))))))).)))..........))))))...)))))))....)))..))......)))))).)))........))))).)))).)))..((.(((((((((((((......))))))))))))).))......))))))))..)))))))))).)))))).)))).))))..)))))))).).))..))))............((((((((((((.............))))))))))))..... (-192.64) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUUCUCCUUUCUGUUGUAUCUAUUUUUAAACAAAAAGAAACUAUAUGAAAAUAAGACUGCUCCCCUACACACGUCACAGCAUUUUCACAUAGCUUCAUUGCUUAUUUAUCUUCAGUACCCCUUUGUACUAUAUUGAAUUAUAACACAAAAGCGCUUUCAUGGCAAUGAAAAAGUCAUUAAUAUAAGAAAUUUUUAGUGCCGCAUCUCACAGCAAAGGCAAGCUUAUUUGAAGAAUUAAAUUUUUAUUAAAAUUUAGUUCAUUUUCCUUGUAAUUCCCUGUGAAAGGUGUUACAAUCUAGUUACUAGGAAAUUGAUUUUAGUACUUUUAAGGAUAUGGAAGUCUGGUGUAAAUCCAGCGCGGUCCCGCCACUGUGAUAAGCUUUUCAGCUUUAAGUCAGGUCUUUAUUCUUAAAUUUUAGUAGAUUUCAUGCCUCGAUGUAAGGUAGUGAUGUCAGUUUGGAACAAACAUUUUAGCUUAGUUUCCAUUAUUGACUCUACGUUUAAGUACGUUAAUUUUCUAAAGAUGAGGUUUCACUUGUCUUUCUGCAAAGGAGCAGAGUCAAUAAUUGGAAAGCUAGUGCUAAUCAACGAAGCUUAGCAUAAAGAUACAAUGAUGUAUAGGCGGCUUUCUUUUUUUAGAAAAUCAAAAUAAGUUCUGUCCUUCCAAGACUUGGUAAAGUCAAUUUGGAAAGACAGAACUUUUUCUGUUUCUUUUUG ................................(((((((((((....((((((.((((..((.(.((((...((((((..(.(((((.....((((((.(((...........(((.((((.....((((((.(((...(((((........((..((((((....))))))..))......)))))..)))...)))))).(((((((((((.....(((((.......((.((((((((((((....)))))))))))).))...)))))......)))))).((((((...((((((..((((((((......))))))))..((((((((((.(((..(((((..((.((((((.(((....)))..))).)))(((((....)))))))..)))))))).))))))))))......))))))..)))))).)))))..)))).))).....(((((...)))))...((((((((((((((((((((((((((((((......))))....((((((((((..((......))..)))))......))))).))))))))))).))).))))))).))))).))).)))))).......))))).)..)))))).)))).)))..))))))))))............((((((((((.(((((((((((....)))))...)))))).)))))))))).....))))))))))) (-183.74) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 361 367 327 185 142 NC_009009:SSA_0964|5end_DEAD_RNA_helicase,_putative_974114..974344_NEGATIVE 322 378 331 122 67 NC_009009:SSA_1078|5end_hypothetical_protein_1095742..1095972_POSITIVE 318 365 321 228 177 NC_009009:SSA_1419|5end_hypothetical_protein_1429675..1429905_NEGATIVE 317 380 331 206 147 NC_009009:SSA_0017|5end_Cell_shape_determining_protein_MreC,_putative_22811..23041_POSITIVE 316 360 320 230 192 NC_009009:SSA_1447|5end_ATP_phosphoribosyltransferase,_putative_1449831..1450061_NEGATIVE 316 190 142 55 8 NC_009009:SSA_0636|5end_N-(5'-phosphoribosyl)anthranilate_isomerase,_putative_625184..625414_POSITIVE 315 389 348 59 8 NC_009009:SSA_1784|5end_Glutamate_racemase,_putative_1769897..1770127_NEGATIVE 310 365 321 210 162 NC_009009:SSA_0385|5end_ABC_transporter,_glycine-betaine/proline_permease_protein,_putative_380250..380480_NEGATIVE 307 366 322 64 16 NC_009009:SSA_0175|5end_Penicillin-binding_protein_1B,_putative_172152..172382_POSITIVE 305 131 91 216 171 NC_009009:SSA_0334|5end_Diphosphomevalonate_decarboxylase,_putative_327855..328085_POSITIVE 302 360 321 230 195 NC_009009:SSA_1490|5end_Ribonuclease_BN,_putative_1496732..1496962_NEGATIVE 296 388 346 231 178 NC_009009:SSA_0142|5end_hypothetical_protein_137230..137460_POSITIVE 295 180 136 47 1 NC_009009:SSA_0489|5end_Adenosylcobinamide_kinase_/_adenosylcobinamide_phosphate_guanyltransferase,_putative_489655..489885_POSITIVE 294 385 347 64 5 NC_009009:SSA_0335|5end_Phosphomevalonate_kinase,_putative_328792..329022_POSITIVE 294 389 346 98 40 NC_009009:SSA_0270|5end_Phosphotransferase_system_(PTS)_cellobiose-specific,_IIC_component,_putative_262873..263103_POSITIVE 293 376 336 165 126 NC_009009:SSA_0875|5end_Rod_shape_determining_protein_(cell-cycle_protein),_putative_868928..869158_POSITIVE 293 388 341 46 4 NC_009009:SSA_0652|5end_UDP-N-acetylmuramoylalanine--D-glutamate_ligase,_putative_635036..635266_POSITIVE 293 380 338 47 11 NC_009009:SSA_0452|5end_Nitrogen_utilization_substance_protein_B,_putative_451534..451764_POSITIVE 292 378 334 59 9 NC_009009:SSA_0318|5end_Secreted_metalloendopeptidase_Gcp_311701..311931_POSITIVE 288 389 343 96 36 NC_009009:SSA_1380|5end_hypothetical_protein_1399131..1399361_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 477 67 21 74 28 NC_009009:SSA_0513|3end_ATP:cob(I)alamin_adenosyltransferase,_putative_512237..512387_POSITIVE 334 378 335 143 86 NC_009009:SSA_2107|3end_Glucosamine--fructose-6-phosphate_aminotransferase_[isomerizing],_putative_2109295..2109445_NEGATIVE 331 300 262 121 83 NC_009009:SSA_0245|3end_hypothetical_protein_239608..239758_POSITIVE 322 378 331 129 74 NC_009009:SSA_1077|3end_N-acetyl-glucosamine_matabolism,_putative_1095829..1095979_POSITIVE 315 180 131 143 100 NC_009009:SSA_2185|3end_Adenylosuccinate_synthetase,_putative_2183998..2184148_NEGATIVE 312 130 93 150 107 NC_009009:SSA_2321|3end_Cation_(Co/Zn/Cd)_efflux_protein,_putative_2326050..2326200_NEGATIVE 311 378 331 140 103 NC_009009:SSA_1418|3end_Conserved_uncharacterized_protein_1428139..1428289_NEGATIVE 306 180 135 54 7 NC_009009:SSA_0488|3end_Glutamate-1-semialdehyde_2,1-aminotransferase,_putative_489742..489892_POSITIVE 296 389 341 145 92 NC_009009:SSA_0999|3end_Biotin--[acetyl-CoA-carboxylase]_ligase,_putative_998781..998931_NEGATIVE 296 388 346 112 59 NC_009009:SSA_0141|3end_Copper_chaperone,_putative_137191..137341_POSITIVE 294 385 347 74 15 NC_009009:SSA_0334|3end_Diphosphomevalonate_decarboxylase,_putative_328882..329032_POSITIVE 294 389 346 92 34 NC_009009:SSA_0269|3end_Phosphotransferase_system_(PTS)_cellobiose-specific_component_IIA,_putative_262947..263097_POSITIVE 293 380 338 69 33 NC_009009:SSA_0451|3end_Conserved_uncharacterized_protein_451636..451786_POSITIVE 292 378 334 69 19 NC_009009:SSA_0317|3end_Ribosomal_protein_alanine_acetyl_transferase,_putative_311791..311941_POSITIVE 288 389 343 81 21 NC_009009:SSA_1381|3end_hypothetical_protein_1399146..1399296_NEGATIVE 287 169 124 77 23 NC_009009:SSA_0468|3end_Precorrin-6y_C5,15-methyltransferase-like,_putative_472418..472568_POSITIVE 285 536 496 94 43 NC_009009:SSA_2049|3end_Polyribonucleotide_nucleotidyltransferase,_putative_2050693..2050843_NEGATIVE 281 370 321 70 17 NC_009009:SSA_1899|3end_hypothetical_protein_1894443..1894593_NEGATIVE 280 364 328 112 73 NC_009009:SSA_2211|3end_Transmembrane_protein,_putative_2211499..2211649_NEGATIVE 278 660 621 151 99 NC_009009:SSA_2018|3end_hypothetical_protein_2017464..2017614_NEGATIVE