Origin IGS: tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaaatgaattttaatgatatgagtatttttgtgacaatctatgagacaagatcaataaataaaagttcaaagatattacaatatgcacaatctaatctcagtgctagattgaaggtgcttgaaactgaattagatacgaagttattttacagaaaatataatggtttagtcccgacagaaagtggagacttattttatcaattttgtaaggaaacttctaacaatttagagaaattaaaaaagaaatgtgaaacctcgaaaatatccatcttaatttcagaattgttattcaatcacgatattaataattcgcaaacaattgatttggataaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttatccaaatcaattgtttgcgaattattaatatcgtgattgaataacaattctgaaattaagatggatattttcgaggtttcacatttcttttttaatttctctaaattgttagaagtttccttacaaaattgataaaataagtctccactttctgtcgggactaaaccattatattttctgtaaaataacttcgtatctaattcagtttcaagcaccttcaatctagcactgagattagattgtgcatattgtaatatctttgaacttttatttattgatcttgtctcatagattgtcacaaaaatactcatatcattaaaattcatttaaaacaccttatcactttttgtgataattatatcatttttaagtattattcaacatgatataaatcatttatactatcaatagttaattagaaaaggggtaccgca Mask Tandem Repeat Region ================================================ tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaaatgaattttaatgatatgagtatttttgtgacaatctatgagacaagatcaataaataaaagttcaaagatattacaatatgcacaatctaatctcagtgctagattgaaggtgcttgaaactgaattagatacgaagttattttacagaaaatataatggtttagtcccgacagaaagtggagacttattttatcaattttgtaaggaaacttctaacaatttagagaaattaaaaaagaaatgtgaaacctcgaaaatatccatcttaatttcagaattgttattcaatcacgatattaataattcgcaaacaattgatttggataaaa Find is-nt database================================================ Query_seq: SSA_0358:SSA_0359|SSA_0358:SSA_0359:hypothetical protein:Trancriptional regulator, LysR-family, putative:<-->:351888..352326 439 tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaaatgaattttaatgatatgagtatttttgtgacaatctatgagacaagatcaataaataaaagttcaaagatattacaatatgcacaatctaatctcagtgctagattgaaggtgcttgaaactgaattagatacgaagttattttacagaaaatataatggtttagtcccgacagaaagtggagacttattttatcaattttgtaaggaaacttctaacaatttagagaaattaaaaaagaaatgtgaaacctcgaaaatatccatcttaatttcagaattgttattcaatcacgatattaataattcgcaaacaattgatttggataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0358:SSA_0359|SSA_0358:SSA_0359:hypothetical protein:Trancriptional regulator, LysR-family, putative:<-->:351888..352326 439 tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaaatgaattttaatgatatgagtatttttgtgacaatctatgagacaagatcaataaataaaagttcaaagatattacaatatgcacaatctaatctcagtgctagattgaaggtgcttgaaactgaattagatacgaagttattttacagaaaatataatggtttagtcccgacagaaagtggagacttattttatcaattttgtaaggaaacttctaacaatttagagaaattaaaaaagaaatgtgaaacctcgaaaatatccatcttaatttcagaattgttattcaatcacgatattaataattcgcaaacaattgatttggataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0358:SSA_0359|SSA_0358:SSA_0359:hypothetical protein:Trancriptional regulator, LysR-family, putative:<-->:351888..352326 439 tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaaatgaattttaatgatatgagtatttttgtgacaatctatgagacaagatcaataaataaaagttcaaagatattacaatatgcacaatctaatctcagtgctagattgaaggtgcttgaaactgaattagatacgaagttattttacagaaaatataatggtttagtcccgacagaaagtggagacttattttatcaattttgtaaggaaacttctaacaatttagagaaattaaaaaagaaatgtgaaacctcgaaaatatccatcttaatttcagaattgttattcaatcacgatattaataattcgcaaacaattgatttggataaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 69 Min: 109 Max: 426 Len: 318 Subject: UniRef90_Q2FKG6 Cluster: Transcriptional regulator, LysR family domain protein; n=5; Staphylococcus aureus subsp. aureus|Rep: Transcriptional regulator, LysR family domain protein - Staphylococcus aureus (strain USA300) HSP 1 e-value: 1.0E-16 bit: 87.4 Len: 294 Query Start:109 Query End:402 Subject Strand: null Subject Start: 4 Subject End: 101 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S E L L F N H ..................................... ............................................................................................................ L N F N D L E I F I T V C E E A S I N K A A I K L R Y A Q S N I S Q R I S K L E N E L G V V L L F R N Q K G A K A T K A G E E F L A Y S K K V L R D T E T I K N K M K N N T M S I L C S E L L F N Y ..................................... Subject: UniRef90_Q81EN6 Cluster: Transcriptional regulators, LysR family; n=2; Bacillus cereus group|Rep: Transcriptional regulators, LysR family - Bacillus cereus (strain ATCC 14579 / DSM 31) HSP 1 e-value: 1.0E-9 bit: 64.3 Len: 276 Query Start:109 Query End:384 Subject Strand: null Subject Start: 15 Subject End: 106 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S ....................................................... ............................................................................................................ M E I N D L I I F K T V A S E G S I S K A A K E L G Y V Q P N V T E R I K K L E Q E L E T P L L H R D N K G V S L L P S G D I L L D Y T N Q I L T L L E E A K D K I K T S G S S Y I I A ....................................................... Subject: UniRef90_Q8NYU9 Cluster: MW0064 protein; n=5; Staphylococcus aureus subsp. aureus|Rep: MW0064 protein - Staphylococcus aureus (strain MW2) HSP 1 e-value: 2.0E-9 bit: 63.5 Len: 276 Query Start:109 Query End:384 Subject Strand: null Subject Start: 1 Subject End: 95 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K - - - E T S N N L E K L K K K C E T S K I S I L I S ....................................................... ............................................................................................................ M N L N I L K S F L V T S E T K N L T K A S E L L N Y S Q S T V S T H I E K L E R Q L D V K L F Y R K K Y G M E L T E E G L A Y V K Y A K V I L D S N S E Y E R E I K G L Y N K K V N I S I N ....................................................... Subject: UniRef90_A2RNK7 Cluster: Hypothetical protein; n=2; Lactococcus lactis subsp. cremoris|Rep: Hypothetical protein - Lactococcus lactis subsp. cremoris (strain MG1363) HSP 1 e-value: 5.0E-9 bit: 62.4 Len: 234 Query Start:109 Query End:342 Subject Strand: null Subject Start: 6 Subject End: 83 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L ................................................................................................. ............................................................................................................ L S I E N M Q L F V T V A D N S S I S R S A E Q L F I D A S S V S R K I S L I E E E L S N Q L F I R S N Q G V A L T D T G I I F Y N F C Q E T L K N L S E L ................................................................................................. Subject: UniRef90_Q02W73 Cluster: Fhu operon transcription regulator; n=1; Lactococcus lactis subsp. cremoris SK11|Rep: Fhu operon transcription regulator - Lactococcus lactis subsp. cremoris (strain SK11) HSP 1 e-value: 6.0E-9 bit: 62.0 Len: 234 Query Start:109 Query End:342 Subject Strand: null Subject Start: 18 Subject End: 95 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L ................................................................................................. ............................................................................................................ L S I E N M Q L F V T V A D N S S I S R A A E Q L F I D A S S V S R K I S L I E E E L S N Q L F I R S N Q G V A L T D T G I L F Y N F C Q E T L K N L S E L ................................................................................................. Subject: UniRef90_Q2EEJ1 Cluster: Regulatory protein, LysR; n=1; Bacillus cereus subsp. cytotoxis NVH 391-98|Rep: Regulatory protein, LysR - Bacillus cereus subsp. cytotoxis NVH 391-98 HSP 1 e-value: 8.0E-9 bit: 61.6 Len: 276 Query Start:109 Query End:384 Subject Strand: null Subject Start: 1 Subject End: 92 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S ....................................................... ............................................................................................................ M E I N D L I I F K T V V S E G S I S K A A K E L G Y V Q P N V T E R I K R L E Q E L E T P L L H R N N K G V S L L P S G D I L L D Y T N K I L N L I E E A K N E V K M S D A S Y R I A ....................................................... Subject: UniRef90_O67145 Cluster: Transcriptional regulator; n=1; Aquifex aeolicus|Rep: Transcriptional regulator - Aquifex aeolicus HSP 1 e-value: 2.0E-8 bit: 60.5 Len: 204 Query Start:124 Query End:327 Subject Strand: null Subject Start: 18 Subject End: 85 ........................................................................................................................... M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N ................................................................................................................ ........................................................................................................................... I E I F C Y V Y E Y K S V T K A S S E L N M S Q S T I S F H M K N L E T Q L G Q K L F Y R K G K T L I P T A F A D K L Y E Y A T E L T N ................................................................................................................ Subject: UniRef90_A1HS85 Cluster: Transcriptional regulator, LysR family; n=1; Thermosinus carboxydivorans Nor1|Rep: Transcriptional regulator, LysR family - Thermosinus carboxydivorans Nor1 HSP 1 e-value: 2.0E-8 bit: 60.5 Len: 318 Query Start:109 Query End:426 Subject Strand: null Subject Start: 1 Subject End: 101 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S E L L F N H D I N N S Q T I ............. ............................................................................................................ M I V D T L K V F V T V I E Q K S F S R A A D I L Y I S Q P S V S L H I R N L E N E L G T K L L H R S S K H V E P T Q S G D I L Y Q H A K N I L L L Y E E A K Q - - - - - K I N L L K N E V T G S L K I G A S F T I ............. Subject: UniRef90_Q5HKV7 Cluster: Transcriptional regulator, LysR family; n=1; Staphylococcus epidermidis RP62A|Rep: Transcriptional regulator, LysR family - Staphylococcus epidermidis (strain ATCC 35984 / RP62A) HSP 1 e-value: 2.0E-8 bit: 60.1 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M N F N Y M K D F I K V V E Y N S L N K A S R E L N I S T P A L S K R I R S I E D Y F D C Q L F Y R T S K G I F L T Q K G N A V Y H S F L K I N E Q F E E L K S K I S E S K ......................................................................... Subject: UniRef90_Q2WNU7 Cluster: Similar to transcriptional regulator; n=1; Clostridium beijerincki NCIMB 8052|Rep: Similar to transcriptional regulator - Clostridium beijerincki NCIMB 8052 HSP 1 e-value: 2.0E-8 bit: 60.1 Len: 273 Query Start:109 Query End:381 Subject Strand: null Subject Start: 1 Subject End: 91 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I .......................................................... ............................................................................................................ M E I N D L R I F Q I V A Y E K S I S K A A L R L G Y A Q S N I T M R I K L L E N K L N T T L F I R N N K G T V I T P N G E K L L K Y A D K I L E L I D E V N S E F L T P K I S S T I .......................................................... Subject: UniRef90_Q2RLB0 Cluster: Transcriptional regulator, LysR family; n=1; Moorella thermoacetica ATCC 39073|Rep: Transcriptional regulator, LysR family - Moorella thermoacetica (strain ATCC 39073) HSP 1 e-value: 4.0E-8 bit: 59.3 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M N I N H L E A F C T V A Q V K S I S E A A R I L H M S Q S S L S Y Q I Q L L E K D L D V E L F T R T T K G V E L T E M G E I V Y E Y G Q T F L Q L A E N L R R D L D N W K ......................................................................... Subject: UniRef90_Q18S14 Cluster: Transcriptional regulator, LysR family; n=2; Desulfitobacterium hafniense|Rep: Transcriptional regulator, LysR family - Desulfitobacterium hafniense (strain DCB-2) HSP 1 e-value: 4.0E-8 bit: 59.3 Len: 201 Query Start:109 Query End:309 Subject Strand: null Subject Start: 1 Subject End: 67 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F .................................................................................................................................. ............................................................................................................ M D F R Q I E A F V S V Y R L R N F S R A G K A L F L T Q P T I S S H I S D L E T E L E V K L F D R S S R E V M P T G A G D I F Y Q Y .................................................................................................................................. Subject: UniRef90_Q9KEL3 Cluster: Transcriptional regulator; n=1; Bacillus halodurans|Rep: Transcriptional regulator - Bacillus halodurans HSP 1 e-value: 5.0E-8 bit: 58.9 Len: 201 Query Start:109 Query End:309 Subject Strand: null Subject Start: 1 Subject End: 67 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F .................................................................................................................................. ............................................................................................................ M E L S D I K L F Q V I A K E G S I S G A A K Q L N Y V Q S N V T A R L Q K L E N E L G V L L F Y R K P K G V Q L T E K G V L F Q Q Y .................................................................................................................................. Subject: UniRef90_Q81VJ1 Cluster: Transcriptional regulator, LysR family; n=10; Bacillus cereus group|Rep: Transcriptional regulator, LysR family - Bacillus anthracis HSP 1 e-value: 9.0E-8 bit: 58.2 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 80 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M E L R D L Q I F Q S V A D Q G S V S S A A K E L N Y V Q S N V T A R I K Q L E N E L K T P L F Y R H K R G M T L T A E G R K M L V Y V N K I L Q D V D E L K Q ........................................................................................... Subject: UniRef90_Q6I027 Cluster: Transcriptional regulator, LysR family; n=7; Bacillus cereus group|Rep: Transcriptional regulator, LysR family - Bacillus anthracis HSP 1 e-value: 9.0E-8 bit: 58.2 Len: 294 Query Start:109 Query End:402 Subject Strand: null Subject Start: 1 Subject End: 101 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K - - - K K C E T S K I S I L I S E L L F N H ..................................... ............................................................................................................ M E I N D L I I F K T V A S E G S I S K A A K E L G Y V Q P N V T E R I K K L E L E L E T P L L H R D N K G V S L L P S G D I L L D Y T N Q I L T L V E E A R D K I K M C G S S Y V I A T S Q S I L T N Y ..................................... Subject: UniRef90_Q1EY43 Cluster: Regulatory protein, LysR:LysR, substrate-binding; n=1; Clostridium sp. OhILAs|Rep: Regulatory protein, LysR:LysR, substrate-binding - Clostridium sp. OhILAs HSP 1 e-value: 1.0E-7 bit: 57.8 Len: 210 Query Start:109 Query End:318 Subject Strand: null Subject Start: 1 Subject End: 70 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E ......................................................................................................................... ............................................................................................................ M D I K D L A I F K T V A S F G N I T K A A E H L N Y A Q S N V T A R I N Q L E Q E L A V D L F I R N S R G V V L T N S G E I F L D Y A N K ......................................................................................................................... Subject: UniRef90_Q1WVB9 Cluster: Transcriptional regulators, LysR family; n=1; Lactobacillus salivarius subsp. salivarius UCC118|Rep: Transcriptional regulators, LysR family - Lactobacillus salivarius subsp. salivarius (strain UCC118) HSP 1 e-value: 2.0E-7 bit: 57.0 Len: 267 Query Start:109 Query End:375 Subject Strand: null Subject Start: 1 Subject End: 95 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E - - - - T S N N L E K L K K - - K C E T S K I S I ................................................................ ............................................................................................................ M N L K Q L Q Y F I A V V E E K Q I T A A A K K L N I A Q P P L S Y Q L K Q L E A E L E T R L F T R T A H G I V L T D A G M M L E K Y A R K I L D L T T V A E E K V K K T T K G E L G K I S L ................................................................ Subject: UniRef90_A0RNV9 Cluster: Transcriptional regulator, putative; n=1; Campylobacter fetus subsp. fetus 82-40|Rep: Transcriptional regulator, putative - Campylobacter fetus subsp. fetus (strain 82-40) HSP 1 e-value: 3.0E-7 bit: 56.2 Len: 255 Query Start:112 Query End:366 Subject Strand: null Subject Start: 4 Subject End: 88 ............................................................................................................... N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................... D F N K I Y T F M A I V K E R S F S K A S K V L G I S Q P A V T L Q I K K L E E I L Q A T L I M R K K N G I I L T K E G E K F Y K L C L K F E G S M F R F K E E A N H I K ......................................................................... Subject: UniRef90_Q2EDP5 Cluster: Regulatory protein, LysR:LysR, substrate-binding; n=1; Bacillus cereus subsp. cytotoxis NVH 391-98|Rep: Regulatory protein, LysR:LysR, substrate-binding - Bacillus cereus subsp. cytotoxis NVH 391-98 HSP 1 e-value: 3.0E-7 bit: 56.2 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 80 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M N L Q D F V A F Y M V A Q E K S I S K A A V R L N F V Q S N V T A K I K R L E V E Y E T Q L F Y R H R N G V T L T H A G E K L L I Y A E K M I Q L L N E S K R ........................................................................................... Subject: UniRef90_P94501 Cluster: HTH-type transcriptional regulator gltR; n=1; Bacillus subtilis|Rep: HTH-type transcriptional regulator gltR - Bacillus subtilis HSP 1 e-value: 3.0E-7 bit: 56.2 Len: 237 Query Start:109 Query End:345 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K .............................................................................................. ............................................................................................................ M N I Q L L Q V F L T T A R E G S I S K A A L T L N Y A Q S N V T N K I Q Q L E N D L Q T K L F Y R H S R G I T L T P P G Q I L V S Y S E K I L H T I E E A R .............................................................................................. Subject: UniRef90_Q4A0D0 Cluster: Putative transcriptional regulator; n=1; Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305|Rep: Putative transcriptional regulator - Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 /DSM 20229) HSP 1 e-value: 4.0E-7 bit: 55.8 Len: 303 Query Start:109 Query End:411 Subject Strand: null Subject Start: 1 Subject End: 108 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K - - - - - - C E T S K I S I L I S E L L - F N H D I N ............................ ............................................................................................................ M D I K H M K Y F V E V V D Q K G M T N A S K H L F I A Q P T I S K A I K D L E Q E L D M T L F D R S K R Q L V L T D A G S I F Y K K C K E I L T L Y N D V P K E I N S L L G L E T G H I S I G L S A V M N M N Q F I N ............................ Subject: UniRef90_A4CFZ9 Cluster: Probable transcriptional regulator; n=1; Pseudoalteromonas tunicata D2|Rep: Probable transcriptional regulator - Pseudoalteromonas tunicata D2 HSP 1 e-value: 4.0E-7 bit: 55.8 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M D W D K L K I F H T V A E A S S F T K A S T I L N L S Q S A I S R Q I Q A L E S D L K V Q L F E R H A R G L V L T E N G E Y L Y K S A H E I I S K L K D V E S N L S G H K ......................................................................... Subject: UniRef90_A1U2W0 Cluster: Transcriptional regulator, LysR family; n=1; Marinobacter aquaeolei VT8|Rep: Transcriptional regulator, LysR family - Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain DSM 11845)) HSP 1 e-value: 4.0E-7 bit: 55.8 Len: 216 Query Start:133 Query End:348 Subject Strand: null Subject Start: 10 Subject End: 81 .................................................................................................................................... F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... .................................................................................................................................... F V A V A E T E S F T R A A K R L D V S T A Q V S R Q V S A L E A R L S T R L F Y R T T R R V S V T E A G Q I F Y Q H C R Q V L D A L E Q A E R ........................................................................................... Subject: UniRef90_Q1ZPS9 Cluster: Transcriptional regulator, LysR family protein; n=2; Vibrionaceae|Rep: Transcriptional regulator, LysR family protein - Vibrio angustum S14 HSP 1 e-value: 4.0E-7 bit: 55.8 Len: 216 Query Start:133 Query End:348 Subject Strand: null Subject Start: 10 Subject End: 81 .................................................................................................................................... F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... .................................................................................................................................... F V A V A E T E S F T A A S K R L G I S T A Q V S R Q V S A L E N R L N T K L F Y R T T R K V S L T E E G N V Y Y Q H C R Q V M D G L E E A E R ........................................................................................... Subject: UniRef90_Q6LPS1 Cluster: Hypothetical transcriptional regulator protein, LysR family; n=3; Photobacterium profundum|Rep: Hypothetical transcriptional regulator protein, LysR family - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 6.0E-7 bit: 55.5 Len: 228 Query Start:109 Query End:336 Subject Strand: null Subject Start: 1 Subject End: 76 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E ....................................................................................................... ............................................................................................................ M K T E D L K L F H Q I V D T G S L N R A S E I F D L P K S N I S R R I K S L E E E L N I L L F H R Q N R A L Q L T E A G S K F Y T K T K A M L I D L E ....................................................................................................... Subject: UniRef90_Q3F171 Cluster: Transcriptional regulators, LysR family; n=1; Bacillus thuringiensis serovar israelensis ATCC 35646|Rep: Transcriptional regulators, LysR family - Bacillus thuringiensis serovar israelensis ATCC 35646 HSP 1 e-value: 8.0E-7 bit: 55.1 Len: 261 Query Start:109 Query End:369 Subject Strand: null Subject Start: 9 Subject End: 95 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I ...................................................................... ............................................................................................................ M N V E D F H T F V V V A E K Q S I S R A A E K L N T V Q S N I T A R I K R L E A Q Y N V Q L F Y R H R H G V I L T P I G V T L L K Y A Q K I L F L I E E S Q K E I K Y S N V ...................................................................... Subject: UniRef90_O34685 Cluster: Putative HTH-type transcriptional regulator yofA; n=1; Bacillus subtilis|Rep: Putative HTH-type transcriptional regulator yofA - Bacillus subtilis HSP 1 e-value: 8.0E-7 bit: 55.1 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M E S G D L K I F Q A V A R E G S I T K A A Q M L N Y V Q S N V T A R V H N L E E D L N I R L F H R T N R G M K L T A A G E N L L Q Y A D Q V L S L L D Q A E K S T R M S R ......................................................................... Subject: UniRef90_Q5X181 Cluster: Hypothetical protein; n=1; Legionella pneumophila str. Paris|Rep: Hypothetical protein - Legionella pneumophila (strain Paris) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 237 Query Start:109 Query End:345 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K .............................................................................................. ............................................................................................................ M E L R H L R Y L L A V Y E Q R N F T R A S E L L Y V S Q P T L S Q Q I G D L E E E L G C L L F H R E Y H Q L I P T E A A E I A C N Y A K E A L G I V Q E L K .............................................................................................. Subject: UniRef90_Q38W16 Cluster: Putative transcriptional regulator, LysR family; n=1; Lactobacillus sakei subsp. sakei 23K|Rep: Putative transcriptional regulator, LysR family - Lactobacillus sakei subsp. sakei (strain 23K) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 204 Query Start:115 Query End:318 Subject Strand: null Subject Start: 2 Subject End: 70 .................................................................................................................. F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G - - - L V P T E S G D L F Y Q F C K E ......................................................................................................................... .................................................................................................................. F K T L E I F K T V Y E T K N F T T A A Q L L F L S Q P T V S V Q I K Q L E E S L D V V L F E R - - N G R Q Q I V P T K Q A D L F Y E Q C Q Q ......................................................................................................................... Subject: UniRef90_Q81AR4 Cluster: Transcriptional regulators, LysR family; n=3; Bacillus cereus group|Rep: Transcriptional regulators, LysR family - Bacillus cereus (strain ATCC 14579 / DSM 31) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 261 Query Start:109 Query End:369 Subject Strand: null Subject Start: 1 Subject End: 87 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I ...................................................................... ............................................................................................................ M D I K D L T V F Y E V A K E K N I S H A A K N L N Y V Q S G V T M R M K Q L E N E L G V P L F Y R N G K G V T L T S N G E I L L T Y A K Q I I Y L M D Q S V K A V Q S N G I ...................................................................... Subject: UniRef90_A3QD58 Cluster: Transcriptional regulator, LysR family; n=1; Shewanella loihica PV-4|Rep: Transcriptional regulator, LysR family - Shewanella loihica (strain BAA-1088 / PV-4) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 225 Query Start:124 Query End:348 Subject Strand: null Subject Start: 7 Subject End: 81 ........................................................................................................................... M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ........................................................................................................................... V S E F V A V A E T E S F T K A G K R L G I S T A Q V S R Q V G A L E Q R L D T K L L Y R T T R K V S M T E E G H L Y Y R H C R Q V L D G L E E A E R ........................................................................................... Subject: UniRef90_A3U1I2 Cluster: Regulatory protein, LysR:LysR, substrate-binding; n=1; Oceanicola batsensis HTCC2597|Rep: Regulatory protein, LysR:LysR, substrate-binding - Oceanicola batsensis HTCC2597 HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 80 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M D L K Q L S Y F M L I H E H G S I S K A A S A A G V V Q P A L S S Q I R K L E A E F G V P L F V R T H R G V V P T S A G D R I Y Q L A A S I T A N I A D A K Q ........................................................................................... Subject: UniRef90_Q12HN5 Cluster: LysR, substrate-binding; n=1; Shewanella denitrificans OS217|Rep: LysR, substrate-binding - Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 2 Subject End: 87 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M Q W E G I S E F V A V A E T E S F T A A G K R L S I S T A Q V S R Q V S Q L E D R L S T K L F Y R T T R K V A L T E E G A V Y Y R H C R Q V L N G L D D A E R A I S S L K ......................................................................... Subject: UniRef90_Q07VS9 Cluster: Transcriptional regulator, LysR family protein; n=1; Shewanella frigidimarina NCIMB 400|Rep: Transcriptional regulator, LysR family protein - Shewanella frigidimarina (strain NCIMB 400) HSP 1 e-value: 1.0E-6 bit: 54.7 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 2 Subject End: 87 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M K W E G I F E F V A V A E T D S F T V A G K R L S I S T A Q V S R Q I S Q L E N R L N T K L F Y R T T R K V S L T E E G T V Y Y Q H C R Q V L N S L D E A E R A I S S L K ......................................................................... Subject: UniRef90_Q5WCE2 Cluster: LysR family transcriptional regulator; n=1; Bacillus clausii KSM-K16|Rep: LysR family transcriptional regulator - Bacillus clausii (strain KSM-K16) HSP 1 e-value: 1.0E-6 bit: 54.3 Len: 183 Query Start:109 Query End:291 Subject Strand: null Subject Start: 1 Subject End: 61 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G .................................................................................................................................................... ............................................................................................................ M D I K D L L I F K T L A Q Q K N I T K T A E Q L N Y V Q S N V T A R I K K L E E T L G T K L F Y R H P R G V S L T G K G .................................................................................................................................................... Subject: UniRef90_Q1ZCQ1 Cluster: Transcriptional regulator, LysR family protein; n=1; Psychromonas sp. CNPT3|Rep: Transcriptional regulator, LysR family protein - Psychromonas sp. CNPT3 HSP 1 e-value: 1.0E-6 bit: 54.3 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 80 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M K W E G I N E F V Y V S E T E S F T K A A R R M S I S T A Q V S R Q V S A L E N R L N I K L F Y R T T R K I S L T Q E G H I F Y Q H C R L L L N G L E D A K R ........................................................................................... Subject: UniRef90_Q92ND2 Cluster: PUTATIVE TRANSCRIPTION REGULATOR PROTEIN; n=2; Sinorhizobium|Rep: PUTATIVE TRANSCRIPTION REGULATOR PROTEIN - Rhizobium meliloti (Sinorhizobium meliloti) HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 300 Query Start:109 Query End:408 Subject Strand: null Subject Start: 1 Subject End: 100 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S E L L F N H D I ............................... ............................................................................................................ M Q V D L I E T F L D L M E T R S F N R T A E R L N I T Q S T V S H R V K A L E T Q F S R K L F T R N K G G T L P T A A G L R F L D Y A K A L Q N Q W H E A T R A V A S A G A L E R S M R L G I Q H D L ............................... Subject: UniRef90_Q81YI9 Cluster: Transcriptional regulator, LysR family; n=7; Bacillus cereus group|Rep: Transcriptional regulator, LysR family - Bacillus anthracis HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 255 Query Start:109 Query End:363 Subject Strand: null Subject Start: 1 Subject End: 85 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S ............................................................................ ............................................................................................................ M D I K D L T V F Y E V A K E N N I S H A A K N L N Y V Q S G V T M R M K Q L E N E L G V P L F Y R N G K G V T L T S N G E I L L T Y A K Q I I H L M D Q S I K A V Q S N ............................................................................ Subject: UniRef90_A0J508 Cluster: Transcriptional regulator, LysR family; n=1; Shewanella woodyi ATCC 51908|Rep: Transcriptional regulator, LysR family - Shewanella woodyi ATCC 51908 HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 237 Query Start:112 Query End:348 Subject Strand: null Subject Start: 3 Subject End: 81 ............................................................................................................... N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................... N W E G I S E F V A V A E A E S F T K A S Q R L G I S T A Q V S R Q V S A L E T R L A T K L F H R T T R K V S T T E V G R V Y Y Q H C R Q V L D G L D E A E R ........................................................................................... Subject: UniRef90_Q1UCL2 Cluster: Helix-turn-helix, Fis-type; n=1; Psychrobacter sp. PRwf-1|Rep: Helix-turn-helix, Fis-type - Psychrobacter sp. PRwf-1 HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 231 Query Start:121 Query End:351 Subject Strand: null Subject Start: 6 Subject End: 82 ........................................................................................................................ D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K ........................................................................................ ........................................................................................................................ D M A L F V R I V E S G S I T K A S E Q L D I A K S A V S R R L K E L E T S L N T Q L I S R T T R R S T V T E A G Q K Y Y Q Q A C S I L S E I E V L N E Q ........................................................................................ Subject: UniRef90_A1VTY4 Cluster: Transcriptional regulator, LysR family; n=1; Polaromonas naphthalenivorans CJ2|Rep: Transcriptional regulator, LysR family - Polaromonas naphthalenivorans (strain CJ2) HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 276 Query Start:109 Query End:384 Subject Strand: null Subject Start: 1 Subject End: 92 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S ....................................................... ............................................................................................................ M E L R Q L R Y F V R I V E L G S M S R A A L D L D L V Q S A L S Q Q I S R L E G E L S T R L L Q R S S K G V V P T E A G L A F F R E A Q L T L R H A E Q A V R A A Q Q S R L S G T V S ....................................................... Subject: UniRef90_A0WYJ4 Cluster: Transcriptional regulator, LysR family; n=1; Shewanella pealeana ATCC 700345|Rep: Transcriptional regulator, LysR family - Shewanella pealeana ATCC 700345 HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 237 Query Start:112 Query End:348 Subject Strand: null Subject Start: 3 Subject End: 81 ............................................................................................................... N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................... N W E G V S E F V A V A E A E S F T K A S Q R L G I S T A Q V S R Q I S A L E T R L A S K L F H R T T R K V S V T E V G R V Y Y Q H C R Q V L D G L E E A E R ........................................................................................... Subject: UniRef90_Q0FG92 Cluster: Transcriptional regulator, LysR family protein; n=1; alpha proteobacterium HTCC2255|Rep: Transcriptional regulator, LysR family protein - alpha proteobacterium HTCC2255 HSP 1 e-value: 2.0E-6 bit: 53.5 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M D W D K L R I F H S V A D V G S L T H A G D V L H L S Q S A V S R Q I R A L E E K L N V T L F H R H A R G L I L T E Q G E L L Y E A T S Q M S K R L E T A E A R I R D S E ......................................................................... Subject: UniRef90_Q8E7Z8 Cluster: Transcriptional regulator, LysR family; n=2; Shewanella|Rep: Transcriptional regulator, LysR family - Shewanella oneidensis HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 237 Query Start:112 Query End:348 Subject Strand: null Subject Start: 3 Subject End: 81 ............................................................................................................... N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................... N W E G V S E F V A V A E A E S F T K A A K Q L G I S T A Q V S R Q V S A L E T R M A T K L F H R T T R K V S V S E V G R I Y Y Q H C R Q V L D G L E E A E R ........................................................................................... Subject: UniRef90_Q87IN3 Cluster: Transcriptional regulator, LysR family; n=3; Vibrio|Rep: Transcriptional regulator, LysR family - Vibrio parahaemolyticus HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 246 Query Start:109 Query End:354 Subject Strand: null Subject Start: 1 Subject End: 82 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C ..................................................................................... ............................................................................................................ M N L T Q V E A F C T I A E C G S V S E A A R Q L D C N R T K L S M S I K A L E K E L D V E L F T R T G N Q L T L S E A G K A I Y K D C E Y L L V T A Q R I R K T C ..................................................................................... Subject: UniRef90_A3Y8R7 Cluster: Transcriptional regulator; n=1; Marinomonas sp. MED121|Rep: Transcriptional regulator - Marinomonas sp. MED121 HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 201 Query Start:109 Query End:309 Subject Strand: null Subject Start: 1 Subject End: 67 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F .................................................................................................................................. ............................................................................................................ M N I E N L R A F L E V T A T G S F Q K A S E S L H I T Q S S V S A R I K A L E D R L N R E L F T R K R D G V A L T N G G K A F Y P Y .................................................................................................................................. Subject: UniRef90_Q15VX9 Cluster: Transcriptional regulator, LysR family; n=1; Pseudoalteromonas atlantica T6c|Rep: Transcriptional regulator, LysR family - Pseudoalteromonas atlantica (strain T6c / BAA-1087) HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 2 Subject End: 81 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M Q W E G I N E F V Y V A E A E S F T Q A S K N L A I S T A Q V S R Q I S A L E T R L N V K L F Y R T T R K V S L T D E G R L F Y Q H C R S V L D G L D A A E R ........................................................................................... Subject: UniRef90_Q3CFR8 Cluster: Regulatory protein, LysR:LysR, substrate-binding; n=2; Thermoanaerobacter ethanolicus|Rep: Regulatory protein, LysR:LysR, substrate-binding - Thermoanaerobacter ethanolicus ATCC 33223 HSP 1 e-value: 3.0E-6 bit: 53.1 Len: 219 Query Start:109 Query End:327 Subject Strand: null Subject Start: 1 Subject End: 73 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N ................................................................................................................ ............................................................................................................ M N I N N L R A F Y K T V Y Y K S I S S S A K E L Y L S Q P A I S Q Q I K T L E K D L K T T L L K R S N R G V I P T P A G E L V Y Q Y A E R I L N ................................................................................................................ Subject: UniRef90_Q4LAH2 Cluster: Similar to LysR-gltR family transcription regulator; n=1; Staphylococcus haemolyticus JCSC1435|Rep: Similar to LysR-gltR family transcription regulator - Staphylococcus haemolyticus (strain JCSC1435) HSP 1 e-value: 4.0E-6 bit: 52.8 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M N L N D L E A F Y K V C E N C S F T K A A Q E L N Y V Q S N V T A K I Q R L E S Y Y Q V K L L Y R D K K G I K P T P E G I E L L N Y I K R I F T I L H E A E H N V S N N K ......................................................................... Subject: UniRef90_A3M9C6 Cluster: Putative transcriptional regulator; n=1; Acinetobacter baumannii ATCC 17978|Rep: Putative transcriptional regulator - Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) HSP 1 e-value: 4.0E-6 bit: 52.8 Len: 267 Query Start:109 Query End:375 Subject Strand: null Subject Start: 1 Subject End: 82 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I ................................................................ ............................................................................................................ M D I T Q L K M F Q T V V E C G T M A K A S L Q L H C V P S N I T T R I K Q L E E E L G A P L F Y R E G K S L K L T P S G E I F L D Y C - - - - - - - H K I L A L C D E A K R S I ................................................................ Subject: UniRef90_A0VI81 Cluster: Transcriptional regulator, LysR family; n=1; Delftia acidovorans SPH-1|Rep: Transcriptional regulator, LysR family - Delftia acidovorans SPH-1 HSP 1 e-value: 4.0E-6 bit: 52.8 Len: 276 Query Start:109 Query End:384 Subject Strand: null Subject Start: 1 Subject End: 92 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I L I S ....................................................... ............................................................................................................ M E L R Q L R Y F V R I V E L G S M S R A A L D L D M V Q S A L S Q Q V S R L E S E L S T R L L Q R T P R G V V P T E A G V A F F R E A Q L T L R H A E Q A V R S A Q Q A R L S G S V S ....................................................... Subject: UniRef90_Q6LGZ9 Cluster: Putative transcriptional regulator, LysR family; n=2; Photobacterium profundum|Rep: Putative transcriptional regulator, LysR family - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 5.0E-6 bit: 52.4 Len: 237 Query Start:112 Query End:348 Subject Strand: null Subject Start: 7 Subject End: 85 ............................................................................................................... N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................... N W E G V S E F V A V T E T E S F T A A S K R L G I S T A Q V S R Q I S A L E K R L S A K L F Y R T T R K V S V T D V G R V Y Y Q H C R Q V L D G L D E A E R ........................................................................................... Subject: UniRef90_Q817A8 Cluster: Transcriptional regulators, LysR family; n=2; Bacillus cereus group|Rep: Transcriptional regulators, LysR family - Bacillus cereus (strain ATCC 14579 / DSM 31) HSP 1 e-value: 5.0E-6 bit: 52.4 Len: 318 Query Start:109 Query End:426 Subject Strand: null Subject Start: 7 Subject End: 116 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C - - - - E T S K I S I L I S E L L F N H D I N N S Q T I ............. ............................................................................................................ M D L E A V R S F I E V K H T R S L S K A S K I L H I S Q P A L S K Q I Q K L E A D L E V T L L K R S A Q G V E L T E A G E L F I K R M L P I L E Q I N E V K T E M R G Y Q E N R K F S I G I L P S L A E H Y I S E C K D I ............. Subject: UniRef90_Q3EF67 Cluster: Transcriptional regulator; n=1; Actinobacillus succinogenes 130Z|Rep: Transcriptional regulator - Actinobacillus succinogenes 130Z HSP 1 e-value: 5.0E-6 bit: 52.4 Len: 267 Query Start:109 Query End:375 Subject Strand: null Subject Start: 1 Subject End: 89 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I ................................................................ ............................................................................................................ M N F N D L S L F L Q L S E T K N F S K T A R Q S H M S P S T L S R Q I Q R M E Q E L G G V L F L R D N R Q V Q L T E L G E Q F A Q F A K R S R A D W Q N F Q S Q V R S N S A E L ................................................................ Subject: UniRef90_Q2WQU7 Cluster: Helix-turn-helix, Fis-type; n=1; Clostridium beijerincki NCIMB 8052|Rep: Helix-turn-helix, Fis-type - Clostridium beijerincki NCIMB 8052 HSP 1 e-value: 5.0E-6 bit: 52.4 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M E S S E L R I F R A V A Q A G S I T K A A Q A L G Y V Q S N V T A R I Q Q L E S D L N T Q L F Y R Q - R G M I L T P T G E K L L A Y A E K I I Y L L D E A D K ........................................................................................... Subject: UniRef90_Q03P25 Cluster: Transcriptional regulator; n=1; Lactobacillus brevis ATCC 367|Rep: Transcriptional regulator - Lactobacillus brevis (strain ATCC 367 / JCM 1170) HSP 1 e-value: 5.0E-6 bit: 52.4 Len: 243 Query Start:109 Query End:351 Subject Strand: null Subject Start: 1 Subject End: 82 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F - Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K ........................................................................................ ............................................................................................................ M T I D D F Y S F I T L Y K T R N I S D A A I A L N I T Q S A L S K R L R N M Q Q E L D T A L I S T R N K R Q L T I T E S G E V F F R Y A Q T L T A Q Y Q L L Q Q E ........................................................................................ Subject: UniRef90_P71025 Cluster: CzcD; n=1; Bacillus subtilis|Rep: CzcD - Bacillus subtilis HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 80 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M E L R D L Q I F K C V A H H K S I T G A A K E L N Y V Q S N V T A R I K Q L E N E L K T P L F N R H K K G V S L S P E G R K M I E Y V N K I L K D V E E L E Q ........................................................................................... Subject: UniRef90_Q6LL42 Cluster: Hypothetical transcription regulator protein; n=2; Photobacterium profundum|Rep: Hypothetical transcription regulator protein - Photobacterium profundum (Photobacterium sp. (strain SS9)) HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 234 Query Start:115 Query End:348 Subject Strand: null Subject Start: 8 Subject End: 85 .................................................................................................................. F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K ........................................................................................... .................................................................................................................. F N K L H Y F N C V V E T G S I S K A S K V F D V Q P S S I S R Q L A S L E S E L G I R L L E R T T R N V G L T E A G K T Y Y D Y S K R I I S E L E E A K R ........................................................................................... Subject: UniRef90_Q92EY6 Cluster: Lin0322 protein; n=11; Listeria|Rep: Lin0322 protein - Listeria innocua HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 282 Query Start:109 Query End:390 Subject Strand: null Subject Start: 1 Subject End: 98 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T - - - - S N N L E K L K K K C E T S K I S I L I S E L ................................................. ............................................................................................................ M D I E N M K A F N K V A E L K S I S A A A N E L H H L Q S N M S N K I K N I E K Q F Q T Q L F F R H S N G V E L T K E G E K I Y Q Q F K K M I L L W E E T I D I I N N E E E T I S I G I T Q S S L ................................................. Subject: UniRef90_A3QA42 Cluster: Transcriptional regulator, LysR family; n=1; Shewanella loihica PV-4|Rep: Transcriptional regulator, LysR family - Shewanella loihica (strain BAA-1088 / PV-4) HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 288 Query Start:109 Query End:396 Subject Strand: null Subject Start: 1 Subject End: 105 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L - - - - - - K K K C E T S K I S I L - - - I S E L L F ........................................... ............................................................................................................ M K T E D I A L F H R I V E T G S L V E A A D I L N V P K S T L S R R L Q T L E D E L N V K L F H R Q S R A M T L T A S G S H F Y N K T T P L L A T L E Q T F S E L S G K E A A V T G H L R I L I F P I P E L L Y ........................................... Subject: UniRef90_A0FSM2 Cluster: Transcriptional regulator, LysR family; n=1; Burkholderia phymatum STM815|Rep: Transcriptional regulator, LysR family - Burkholderia phymatum STM815 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 249 Query Start:109 Query End:357 Subject Strand: null Subject Start: 1 Subject End: 83 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E .................................................................................. ............................................................................................................ M D V R Q L K Y F V T I V D S C S L S K A A E R L F V A Q P S L S Q Q I L N L E A E L K A Q L L I R S P Q G V A P T E A G K A L Y R L S R D V L R R M D Q I R Q E V Q .................................................................................. Subject: UniRef90_Q2AS25 Cluster: Regulatory protein, LysR:LysR, substrate-binding; n=1; Bacillus weihenstephanensis KBAB4|Rep: Regulatory protein, LysR:LysR, substrate-binding - Bacillus weihenstephanensis KBAB4 HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 258 Query Start:109 Query End:366 Subject Strand: null Subject Start: 1 Subject End: 86 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K ......................................................................... ............................................................................................................ M D I K D L T V F Y E V A T V G N I S H A A K N L N Y V Q S G V T M R I K Q L E N E L G A L L F Y R N G K G V S L T S N G E I L L T Y A K K I I H L M D Q S V K A V Q S N E ......................................................................... Subject: UniRef90_Q44311 Cluster: HTH-type transcriptional regulator soxR; n=2; Arthrobacter|Rep: HTH-type transcriptional regulator soxR - Arthrobacter sp. (strain TE1826) HSP 1 e-value: 6.0E-6 bit: 52.0 Len: 195 Query Start:109 Query End:303 Subject Strand: null Subject Start: 1 Subject End: 67 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D - - L F Y ........................................................................................................................................ ............................................................................................................ M E I K D L Q I F Q K V V E Y G S V S K A A K S L N Y V Q S Y V T V R I Q K L E E E L Q T E L F H R S S R G M V L N S E G K T L L F Y ........................................................................................................................................ Subject: UniRef90_Q6D356 Cluster: Nitrogen assimilation regulatory protein; n=1; Pectobacterium atrosepticum|Rep: Nitrogen assimilation regulatory protein - Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 237 Query Start:109 Query End:345 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K .............................................................................................. ............................................................................................................ M N L R R L K Y F V K I V D I G S L T Q A A E L L H I A Q P A L S Q Q V A T L E S E L E K Q L L V R S R R G V T P T E A G K I L Y S H A Q T I L S Q C E Q A K .............................................................................................. Subject: UniRef90_A3RV57 Cluster: Nac; n=2; Ralstonia solanacearum|Rep: Nac - Ralstonia solanacearum UW551 HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 237 Query Start:109 Query End:345 Subject Strand: null Subject Start: 1 Subject End: 79 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K .............................................................................................. ............................................................................................................ M N F R R L R Y F V K I V D V G S V T Q A A D L L H V A Q P S L S Q Q M A T L E G E V R Q Q L L L R T K Q G V V P T E A G K V L Y R H A Q A I L R Q V D Q A K .............................................................................................. Subject: UniRef90_A4A6Y1 Cluster: LysR family transcriptional regulatory protein; n=1; Congregibacter litoralis KT71|Rep: LysR family transcriptional regulatory protein - Congregibacter litoralis KT71 HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 267 Query Start:109 Query End:375 Subject Strand: null Subject Start: 4 Subject End: 92 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K E T S N N L E K L K K K C E T S K I S I ................................................................ ............................................................................................................ I D L N D Y F Y F V H V V E K R G F S S A A Q A L G M P K S R L S R H I S A L E R R L D T R L I Q R T T R Q F N V T E S G E L F Y R H A R A L I D E M E A A E A A I K R S K N S L ................................................................ Subject: UniRef90_A0WFI5 Cluster: Transcriptional regulator, LysR family; n=1; Marinomonas sp. MWYL1|Rep: Transcriptional regulator, LysR family - Marinomonas sp. MWYL1 HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 219 Query Start:109 Query End:327 Subject Strand: null Subject Start: 1 Subject End: 74 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y - Q F C K E T S N ................................................................................................................ ............................................................................................................ M D I R S L R Y F I A V Y E E R S L S A A A K R C F V A Q P S I S T T V A Q L E D D L G T K L F V R H S K G V S P T D S G S Q L Y P H A C K M V S D ................................................................................................................ Subject: UniRef90_A0W5G1 Cluster: Transcriptional regulator, LysR family; n=1; Geobacter lovleyi SZ|Rep: Transcriptional regulator, LysR family - Geobacter lovleyi SZ HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 240 Query Start:109 Query End:348 Subject Strand: null Subject Start: 1 Subject End: 84 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q - - - - F C K E T S N N L E K L K K ........................................................................................... ............................................................................................................ M T L K Q L E V F L A V A D T R S F S K G G E A V S L A Q S T A S Q H I R A L E D E L N V R L F D R S A S Q V A L T E V G R L F Y D H A A G I C R H C S E A V E A V R R ........................................................................................... Subject: UniRef90_Q1W4Z7 Cluster: Putative LysR binding protein; n=1; Pseudomonas aeruginosa|Rep: Putative LysR binding protein - Pseudomonas aeruginosa HSP 1 e-value: 8.0E-6 bit: 51.6 Len: 207 Query Start:109 Query End:315 Subject Strand: null Subject Start: 2 Subject End: 70 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S G D L F Y Q F C K ............................................................................................................................ ............................................................................................................ L R L D D M E I F V E V V R Q N S L R K A A E K L K I P V S T L S R R L S V L E K E I G V R L I R R T T R T L E V T E L G N A Y Y Q R C K ............................................................................................................................ tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatttggataaaa Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 109 End: 438 ............................................................................................................ M N F N D M S I F V T I Y E T R S I N K S S K I L Q Y A Q S N L S A R L K V L E T E L D T K L F Y R K Y N G L V P T E S . Protein_Len: 31 Strand: - Start: 306 End: 398 ................................................................................................................................................................................................................................................................................................................. N Q L S V E L L K S F N F F F H S V E F I D M K I E S N N N M ......................................... Protein_Len: 32 Strand: - Start: 212 End: 307 ................................................................................................................................................................................................................... I S P A Q F Q I L Y S T I K C F I Y H N L G S L F H L S I K D M .................................................................................................................................... Protein_Len: 32 Strand: - Start: 52 End: 147 ................................................... T S Y Y K F I I Y N D C F T I L H K L H I K I I H T N K H C D M .................................................................................................................................................................................................................................................................................................... tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatttggataaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 58 End: 87 .........................................................TGTGATAATTATATCATTTTTAAGTATTAT................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatttggataaaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 42 HP_score: -2.1 Tail_Score: -3.28924 Start: 44 End: 79 Full_Region: GATAGTATAAATGAT TTATATCATGTTGAA TAATAC TTAAAAATGATATAA TTATCACAAAAAGTG ...........................................TTATATCATGTTGAATAATACTTAAAAATGATATAA........................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 41 HP_score: -2.6 Tail_Score: -2.81476 Start: 79 End: 99 Full_Region: CTTAAAAATGATATA ATTATCAC AAAAA GTGATAAG GTGTTTTAAATGAAT ..............................................................................ATTATCACAAAAAGTGATAAG.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 63 HP_score: -6.1 Tail_Score: -3.72037 Start: 80 End: 98 Full_Region: ttcatttaaaacacc ttatcac ttttt gtgataa ttatatcatttttaa ...............................................................................ttatcactttttgtgataa..................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: SSA_0358:SSA_0359|SSA_0358:SSA_0359:hypothetical protein:Trancriptional regulator, LysR-family, putative:<-->:351888..352326 439 tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatttggataaaa Intra-Species Hit: Count: 1 Min: 1 Max: 108 Len: 108 Subject: NC_009009_SSA_0358_SSA_0359|hypothetical protein:Trancriptional regulator, LysR-family, putative|NEGATIVE:POSITIVE|[351888,352326]|439 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaa........................................................................................................................................................................................................................................................................................................................................... tgcggtaccccttttctaattaactattgatagtataaatgatttatatcatgttgaataatacttaaaaatgatataattatcacaaaaagtgataaggtgttttaa........................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGCGGUACCCCUUUUCUAAUUAACUAUUGAUAGUAUAAAUGAUUUAUAUCAUGUUGAAUAAUACUUAAAAAUGAUAUAAUUAUCACAAAAAGUGAUAAGGUGUUUUAA .....((((.............((((....)))).........(((((((((.((((.......))))..))))))))).((((((.....)))))).))))...... (-14.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAAACACCUUAUCACUUUUUGUGAUAAUUAUAUCAUUUUUAAGUAUUAUUCAACAUGAUAUAAAUCAUUUAUACUAUCAAUAGUUAAUUAGAAAAGGGGUACCGCA .......((((((((((.....)))))).(((((((((.((.((......)).)).)))))))))....((((.((((....))))....))))....))))...... (-15.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 745 50 1 141 92 NC_009009:SSA_0358|5end_hypothetical_protein_351797..352027_NEGATIVE 235 27 1 119 87 NC_009009:SSA_1172|5end_hypothetical_protein_1199926..1200156_NEGATIVE 226 28 1 127 96 NC_009009:SSA_1933|5end_(3R)-hydroxymyristoyl-[acyl_carrier_protein]_dehydratase,_putative_1921315..1921545_NEGATIVE 200 18 1 111 91 NC_009009:SSA_2044|5end_Cysteinyl-tRNA_synthetase,_putative_2048409..2048639_NEGATIVE 190 21 4 126 108 NC_009009:SSA_2197|5end_hypothetical_protein_2197784..2198014_NEGATIVE 184 51 12 65 30 NC_009009:SSA_1798|5end_hypothetical_protein_1780513..1780743_NEGATIVE 184 26 1 217 197 NC_009009:SSA_1402|5end_ABC-type_multidrug_transport_system,_ATPase_and_permease_components,_putative_1416220..1416450_NEGATIVE 179 28 1 129 105 NC_009009:SSA_1543|5end_hypothetical_protein_1547835..1548065_POSITIVE 177 46 2 174 123 NC_009009:SSA_1997|5end_Membrane_spanning_protein,_putative_1994911..1995141_NEGATIVE 176 49 2 93 43 NC_009009:SSA_0604|5end_hypothetical_protein_592451..592681_POSITIVE 173 17 1 225 205 NC_009009:SSA_1713|5end_D-3-phosphoglycerate_dehydrogenase,_putative_1701384..1701614_NEGATIVE 173 44 1 139 91 NC_009009:SSA_0669|5end_ATP_dependent_protease,_putative_653720..653950_NEGATIVE 172 21 1 163 145 NC_009009:SSA_0202|5end_hypothetical_protein_200534..200764_POSITIVE 170 19 1 49 32 NC_009009:SSA_1400|5end_Pyridoxal_kinase,_putative_1413072..1413302_NEGATIVE 169 30 3 229 206 NC_009009:SSA_0514|5end_PduQ_protein,_putative_512877..513107_POSITIVE 167 45 3 71 34 NC_009009:SSA_2359|5end_Glucose_inhibited_division_protein_A,_putative_2362520..2362750_NEGATIVE 166 33 2 127 95 NC_009009:SSA_1014|5end_Phosphatidylserine_decarboxylase_proenzyme_2,_putative_1017846..1018076_POSITIVE 162 100 65 47 15 NC_009009:SSA_0515|5end_Propanediol_utilization_protein_PduU,_putative_514134..514364_POSITIVE 161 32 1 123 92 NC_009009:SSA_1874|5end_YorfE_protein,_putative_1870295..1870525_POSITIVE 161 33 1 156 123 NC_009009:SSA_1443|5end_1-(5-phosphoribosyl)-5-[(5-_phosphoribosylamino)methylideneamino]_imidazole-4-carboxamide_isomerase,_putative_1446672..1446902_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 226 28 1 130 99 NC_009009:SSA_1934|3end_Biotin_carboxyl_carrier_protein_of_acetyl-CoA_carboxylase,_putative_1921312..1921462_NEGATIVE 200 18 1 93 73 NC_009009:SSA_2045|3end_Reductase,_putative_2048427..2048577_NEGATIVE 192 67 28 60 19 NC_009009:SSA_2062|3end_hypothetical_protein_2063291..2063441_NEGATIVE 190 21 4 68 50 NC_009009:SSA_2198|3end_hypothetical_protein_2197842..2197992_NEGATIVE 185 36 2 54 16 NC_009009:SSA_2378|3end_Two-component_system_transcriptional_regulator,_LytR/AlgR_family,_putative_2383129..2383279_NEGATIVE 184 51 12 65 30 NC_009009:SSA_1799|3end_Acetyltransferase,_putative_1780513..1780663_NEGATIVE 176 49 2 74 24 NC_009009:SSA_0603|3end_Cobalt_transporter,_putative_592512..592662_POSITIVE 166 33 2 134 102 NC_009009:SSA_1013|3end_Phosphatidylserine_synthase,_putative_1017933..1018083_POSITIVE 164 32 1 151 118 NC_009009:SSA_2096|3end_ATP-dependent_protease,_ATP-binding_subunit,_putative_2099557..2099707_NEGATIVE 156 33 1 72 29 NC_009009:SSA_1493|3end_hypothetical_protein_1498929..1499079_NEGATIVE 151 50 2 73 15 NC_009009:SSA_1359|3end_Arginine/histidine_ABC_transporter,_permease_component,_putative_1376430..1376580_POSITIVE 149 55 11 128 86 NC_009009:SSA_1567|3end_Polar_amino_acid_ABC_transporter,_amino_acid-binding_protein,_putative_1571267..1571417_POSITIVE 143 25 1 116 98 NC_009009:SSA_0494|3end_ABC-type_dipeptide/oligopeptide/nickel_transport_system,_ATPase_component,_putative_495269..495419_POSITIVE 142 46 2 104 62 NC_009009:SSA_1207|3end_Phosphate_acetyltransferase,_putative_1231297..1231447_NEGATIVE 142 75 35 43 1 NC_009009:SSA_0159|3end_hypothetical_protein_157056..157206_POSITIVE 142 26 3 122 99 NC_009009:SSA_0040|3end_Phosphoribosylaminoimidazole_carboxylase,_ATPase_subunit,_putative_47479..47629_POSITIVE 141 33 2 130 108 NC_009009:SSA_1322|3end_Glycosyl_transferase,_putative_1338536..1338686_NEGATIVE 141 19 1 111 95 NC_009009:SSA_0939|3end_Inositol_monophosphatase_(Mg++_dependent),_putative_947705..947855_POSITIVE 140 33 1 110 82 NC_009009:SSA_1237|3end_Uracil-DNA_glycosylase,_putative_1261713..1261863_NEGATIVE 139 35 1 146 111 NC_009009:SSA_2303|3end_hypothetical_protein_2304113..2304263_NEGATIVE