Origin IGS: agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttcctcaccaaaaatcaacattgttatattaactttttactaaaaaatgtttgttttaagtaaccttagttattttaccatcaagcgtttcaataatcaaagcatgaactattattttatactttcttaatagtaatttacatgttggtaacttatttaagattattttaattttcttaacttaactgtaacttaaaattactgaaattttttggttttctcaaaaaaataaataaaaaggaaagaacttataggcttaaagccctgatttatgcagaattttgtgttttttacctatattttttaatctttattcattgtaataaaatattattctatttgtaatctaattgttttctattctttatcttccaaaaaacctcccttcatgaatgaaacagctagataaatgccagctactgatctttacaatctccgaccactaccattaaaactaacctcctctttttaataatttcaaacctacccctcatactattttaggaattttaaaatagtataacctagcgctatcatactacaaaaaaccagctacctccctgattaaaaataaatatggcatctcgcatcatagaaaaactgaaacaggaaatcttgaatatttcttctatagtcgttgatccataaaggagagcttaaaaacaactttctaagtatattatgggataatatttagttgcgagcaagaaattatcggctgcaacaaaaaatccctcccgaaaatcgggagggaaagttct Mask Tandem Repeat Region ================================================ agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Find is-nt database================================================ Query_seq: SSA_0177:SSA_0178|SSA_0177:SSA_0178:DNA-directed RNA polymerase I, beta chain (160 kDa subunit), putative:UDP-N-acetylglucosamine 2-epimerase, putative:->->:182193..182955 763 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0177:SSA_0178|SSA_0177:SSA_0178:DNA-directed RNA polymerase I, beta chain (160 kDa subunit), putative:UDP-N-acetylglucosamine 2-epimerase, putative:->->:182193..182955 763 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0177:SSA_0178|SSA_0177:SSA_0178:DNA-directed RNA polymerase I, beta chain (160 kDa subunit), putative:UDP-N-acetylglucosamine 2-epimerase, putative:->->:182193..182955 763 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Predict ORF larger than 30AA ================================================ Protein_Len: 42 Strand: + Start: 69 End: 194 .................................................................... M L S H N I L R K L F L S S P L W I N D Y R R N I Q D F L F Q F F Y D A R C H I Y F ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 130 End: 225 ................................................................................................................................. M E E I F K I S C F S F S M M R D A I F I F N Q G G S W F F V V .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 590 End: 703 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K I I L N K L P T C K L L L R K Y K I I V H A L I I E T L D G K I T K V T ............................................................ Protein_Len: 47 Strand: - Start: 420 End: 560 ................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y F L I K N C H I F I L F Y L Y F V C F E A Y I L A K L R Y T R E K K N I K K L F G F F K M ........................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 356 End: 445 ................................................................................................................................................................................................................................................................................................................................................................... R A T E N M F P P K K S S L S Y F V I L N C I S Y Y K I V M .............................................................................................................................................................................................................................................................................................................................. agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 661 End: 690 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTATTGAAACGCTTGATGGTAAAAT......................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 225 End: 254 ................................................................................................................................................................................................................................TTTTAAAATAGTATAACCTAGCGCTATCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 416 End: 445 ...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAATAAAATATTATTCTATTTGTAAT.............................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SSA_0177:SSA_0178|SSA_0177:SSA_0178:DNA-directed RNA polymerase I, beta chain (160 kDa subunit), putative:UDP-N-acetylglucosamine 2-epimerase, putative:->->:182193..182955 763 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattacaaatagaataatattttattacaatgaataaagattaaaaaatataggtaaaaaacacaaaattctgcataaatcagggctttaagcctataagttctttcctttttatttatttttttgagaaaaccaaaaaatttcagtaattttaagttacagttaagttaagaaaattaaaataatcttaaataagttaccaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa Intra-Species Hit: Count: 1 Min: 1 Max: 763 Len: 763 Subject: NC_009009_SSA_0177_SSA_0178|DNA-directed RNA polymerase I, beta chain (160 kDa subunit), putative:UDP-N-acetylglucosamine 2-epimerase, putative|POSITIVE:POSITIVE|[182193,182955]|763 HSP 1 e-value: 0.0 bit: 833.0 Len: 420 Query Start:1 Query End:420 Subject Strand: POSITIVE Subject Start: 1 Subject End: 420 agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattac....................................................................................................................................................................................................................................................................................................................................................... agaactttccctcccgattttcgggagggattttttgttgcagccgataatttcttgctcgcaactaaatattatcccataatatacttagaaagttgtttttaagctctcctttatggatcaacgactatagaagaaatattcaagatttcctgtttcagtttttctatgatgcgagatgccatatttatttttaatcagggaggtagctggttttttgtagtatgatagcgctaggttatactattttaaaattcctaaaatagtatgaggggtaggtttgaaattattaaaaagaggaggttagttttaatggtagtggtcggagattgtaaagatcagtagctggcatttatctagctgtttcattcatgaagggaggttttttggaagataaagaatagaaaacaattagattac....................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 8.0E-80 bit: 299.0 Len: 151 Query Start:613 Query End:763 Subject Strand: POSITIVE Subject Start: 613 Subject End: 763 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................accaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................accaacatgtaaattactattaagaaagtataaaataatagttcatgctttgattattgaaacgcttgatggtaaaataactaaggttacttaaaacaaacattttttagtaaaaagttaatataacaatgttgatttttggtgaggaaaa HSP 3 e-value: 2.0E-12 bit: 75.8 Len: 38 Query Start:485 Query End:522 Subject Strand: POSITIVE Subject Start: 485 Subject End: 522 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgcataaatcagggctttaagcctataagttctttcc................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgcataaatcagggctttaagcctataagttctttcc................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAACUUUCCCUCCCGAUUUUCGGGAGGGAUUUUUUGUUGCAGCCGAUAAUUUCUUGCUCGCAACUAAAUAUUAUCCCAUAAUAUACUUAGAAAGUUGUUUUUAAGCUCUCCUUUAUGGAUCAACGACUAUAGAAGAAAUAUUCAAGAUUUCCUGUUUCAGUUUUUCUAUGAUGCGAGAUGCCAUAUUUAUUUUUAAUCAGGGAGGUAGCUGGUUUUUUGUAGUAUGAUAGCGCUAGGUUAUACUAUUUUAAAAUUCCUAAAAUAGUAUGAGGGGUAGGUUUGAAAUUAUUAAAAAGAGGAGGUUAGUUUUAAUGGUAGUGGUCGGAGAUUGUAAAGAUCAGUAGCUGGCAUUUAUCUAGCUGUUUCAUUCAUGAAGGGAGGUUUUUUGGAAGAUAAAGAAUAGAAAACAAUUAGAUUACAAAUAGAAUAAUAUUUUAUUACAAUGAAUAAAGAUUAAAAAAUAUAGGUAAAAAACACAAAAUUCUGCAUAAAUCAGGGCUUUAAGCCUAUAAGUUCUUUCCUUUUUAUUUAUUUUUUUGAGAAAACCAAAAAAUUUCAGUAAUUUUAAGUUACAGUUAAGUUAAGAAAAUUAAAAUAAUCUUAAAUAAGUUACCAACAUGUAAAUUACUAUUAAGAAAGUAUAAAAUAAUAGUUCAUGCUUUGAUUAUUGAAACGCUUGAUGGUAAAAUAACUAAGGUUACUUAAAACAAACAUUUUUUAGUAAAAAGUUAAUAUAACAAUGUUGAUUUUUGGUGAGGAAAA .......(((((((((.....)))))))))......((((((((.((.....))..))).))))).......((((((.......((((((...((((((.....(((((((.(((((((..(((....((((..(((((.......)))))))))....)))..))))))).).)))).)).....((((....((((((........))))))....))))...)))))).))))))((((((((((((.......)))))))))))).)))))).(((((...........((((..(..((((((((...(((((..(((((..((((.......))))..)))))..)))))(((((((..(.............((((((((.(((((....(((((((((.......((((.....((((((....(((((((......)))))))..............((.....)).....))))))....)))).((((.....)))).............)))))))))...))))).))))))))..((((((.....))))))..)..))))))).......))))))))..)..))))...(((((.(((......((..(((((((((((...((....(((((((((....)))...))))))...)).)))))))))))..)).....))).)))))...))))).(((((((.((((((.(((((((....))))))))))))).))))))).. (-169.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUCCUCACCAAAAAUCAACAUUGUUAUAUUAACUUUUUACUAAAAAAUGUUUGUUUUAAGUAACCUUAGUUAUUUUACCAUCAAGCGUUUCAAUAAUCAAAGCAUGAACUAUUAUUUUAUACUUUCUUAAUAGUAAUUUACAUGUUGGUAACUUAUUUAAGAUUAUUUUAAUUUUCUUAACUUAACUGUAACUUAAAAUUACUGAAAUUUUUUGGUUUUCUCAAAAAAAUAAAUAAAAAGGAAAGAACUUAUAGGCUUAAAGCCCUGAUUUAUGCAGAAUUUUGUGUUUUUUACCUAUAUUUUUUAAUCUUUAUUCAUUGUAAUAAAAUAUUAUUCUAUUUGUAAUCUAAUUGUUUUCUAUUCUUUAUCUUCCAAAAAACCUCCCUUCAUGAAUGAAACAGCUAGAUAAAUGCCAGCUACUGAUCUUUACAAUCUCCGACCACUACCAUUAAAACUAACCUCCUCUUUUUAAUAAUUUCAAACCUACCCCUCAUACUAUUUUAGGAAUUUUAAAAUAGUAUAACCUAGCGCUAUCAUACUACAAAAAACCAGCUACCUCCCUGAUUAAAAAUAAAUAUGGCAUCUCGCAUCAUAGAAAAACUGAAACAGGAAAUCUUGAAUAUUUCUUCUAUAGUCGUUGAUCCAUAAAGGAGAGCUUAAAAACAACUUUCUAAGUAUAUUAUGGGAUAAUAUUUAGUUGCGAGCAAGAAAUUAUCGGCUGCAACAAAAAAUCCCUCCCGAAAAUCGGGAGGGAAAGUUCU .((((((.................((((...)))).....((((((((((.((.(((((((((.((...(((((..((((((.((.((...............))....(((((((.............)))))))........)).)))))).....((((((..((....))..))))))..))))))).)))))))))....)).))))))))))......................))))))(((((((((((...((((((..(((((.....)))))..).)))))...))))))..........................((((((((((((((.(((((((((.(((((((..((((...........................))))))))))).)))))..................((((...(((((............................((((((((...................((((((((((((.....))))))))))))....((((......................))))........))))))))....(((((.(((.((.((.((((((.........((((....))))........)))))).))))..))))))))..)))))...))))..............))))..)))))))))))))).(((((.(((..((.....)).))))))))......(((((((((.....))))))))).))))). (-134.09) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 341 364 321 49 8 NC_009009:SSA_1467|5end_Chorismate_synthase,_putative_1474293..1474523_NEGATIVE 324 224 182 141 105 NC_009009:SSA_1783|5end_Xanthosine_triphosphate_pyrophosphatase_(NTPase/HAM1_family),_putative_1769106..1769336_NEGATIVE 314 366 323 160 110 NC_009009:SSA_0159|5end_hypothetical_protein_155000..155230_POSITIVE 313 60 13 181 126 NC_009009:SSA_1362|5end_ORFB,_transposon_ISSsa2_1377911..1378141_POSITIVE 307 42 1 202 167 NC_009009:SSA_1735|5end_UreX,_putative_1721072..1721302_NEGATIVE 306 62 22 144 97 NC_009009:SSA_1324|5end_Ceramide_glucosyltransferase,_putative_1341618..1341848_NEGATIVE 304 357 314 43 1 NC_009009:SSA_0335|5end_Phosphomevalonate_kinase,_putative_328792..329022_POSITIVE 303 58 12 47 1 NC_009009:SSA_1416|5end_hypothetical_protein_1427317..1427547_NEGATIVE 301 363 324 61 21 NC_009009:SSA_0252|5end_hypothetical_protein_245839..246069_NEGATIVE 300 382 342 229 189 NC_009009:SSA_2363|5end_Phosphoglycolate_phosphatase,_putative_2365632..2365862_POSITIVE 300 47 6 160 106 NC_009009:SSA_1653|5end_hypothetical_protein_1651371..1651601_NEGATIVE 300 59 11 230 186 NC_009009:SSA_0783|5end_Proton-translocating_ATPase,_F0_sector,_subunit_a,_putative_766815..767045_POSITIVE 299 384 341 220 171 NC_009009:SSA_0337|5end_Hydroxymethylglutaryl-CoA_reductase,_putative_332163..332393_NEGATIVE 297 366 321 64 26 NC_009009:SSA_0413|5end_Anthranilate/para-aminobenzoate_synthases_component_I/_Chorismate_binding_enzyme,_putative_410036..410266_NEGATIVE 296 70 21 190 141 NC_009009:SSA_0266|5end_ORFB,_transposon_ISSsa1_260134..260364_POSITIVE 295 382 346 88 60 NC_009009:SSA_1605|5end_Major_facilitator_superfamily_multi-drug_resistance_efflux_pump_pmrA,_putative_1611732..1611962_NEGATIVE 294 370 323 153 109 NC_009009:SSA_0189|5end_Competence_protein_ComGF,_putative_191015..191245_POSITIVE 293 49 1 67 21 NC_009009:SSA_1781|5end_hypothetical_protein_1767605..1767835_NEGATIVE 293 60 14 113 66 NC_009009:SSA_1448|5end_ATP_phosphoribosyltransferase_regulatory_subunit,_putative_1450817..1451047_NEGATIVE 291 340 296 186 143 NC_009009:SSA_1245|5end_Transcriptional_regulator,_LysR_family,_putative_1268722..1268952_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 437 49 8 106 61 NC_009009:SSA_0177|3end_DNA-directed_RNA_polymerase_I,_beta_chain_(160_kDa_subunit),_putative_182132..182282_POSITIVE 324 224 182 144 108 NC_009009:SSA_1784|3end_Glutamate_racemase,_putative_1769103..1769253_NEGATIVE 321 350 301 44 1 NC_009009:SSA_0837|3end_Glucosyltransferase,_putative_825502..825652_POSITIVE 304 357 314 53 11 NC_009009:SSA_0334|3end_Diphosphomevalonate_decarboxylase,_putative_328882..329032_POSITIVE 303 58 12 60 14 NC_009009:SSA_1417|3end_SAM-dependent_methyltransferase,_putative_1427304..1427454_NEGATIVE 300 47 6 140 86 NC_009009:SSA_1655|3end_hypothetical_protein_1651391..1651541_NEGATIVE 293 49 1 70 24 NC_009009:SSA_1782|3end_hypothetical_protein_1767602..1767752_NEGATIVE 293 60 14 57 10 NC_009009:SSA_1449|3end_Histidinol-phosphate/aromatic_aminotransferase_and_cobyric_acid_decarboxylase,_putative_1450873..1451023_NEGATIVE 292 59 16 66 23 NC_009009:SSA_0739|3end_Carbamate_kinase,_putative_722114..722264_POSITIVE 287 363 323 151 104 NC_009009:SSA_0158|3end_hypothetical_protein_155074..155224_POSITIVE 286 224 181 126 82 NC_009009:SSA_2372|3end_hypothetical_protein_2374285..2374435_POSITIVE 284 367 325 105 59 NC_009009:SSA_1258|3end_Purine_nucleoside_phosphorylase,_family_1,_putative_1283858..1284008_NEGATIVE 279 350 301 70 18 NC_009009:SSA_1552|3end_hypothetical_protein_1555130..1555280_POSITIVE 276 384 341 81 33 NC_009009:SSA_2239|3end_Conserved_uncharacterized_cytosolic_protein_2236922..2237072_NEGATIVE 276 59 21 116 73 NC_009009:SSA_0634|3end_Anthranilate_phosphoribosyltransferase,_putative_624471..624621_POSITIVE 275 60 11 118 64 NC_009009:SSA_2183|3end_Glucose-6-phosphate_isomerase,_putative_2181155..2181305_NEGATIVE 274 189 144 62 13 NC_009009:SSA_0316|3end_hypothetical_protein_311342..311492_POSITIVE 273 56 11 147 96 NC_009009:SSA_2351|3end_ABC-type_nitrate/sulfonate/bicarbonate_transport_system,_ATPase_component,_putative_2352785..2352935_NEGATIVE 269 690 644 113 65 NC_009009:SSA_1179|3end_Carbamoylphosphate_synthase_large_subunit_/_biotin_carboxylase,_putative_1206640..1206790_NEGATIVE 268 240 191 145 88 NC_009009:SSA_1326|3end_Peptidase_T,_putative_1343735..1343885_POSITIVE