Origin IGS: tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaatcctatccttttctctattttaagtattataaaaacattatactttatcaaaatctcataaagctttatgataaagcagaagaccttgttttagtttgatttttgccctttcttgggataaaataagaagaaatataacctaagaggcagtttattgatttccagttttatccaacaacatccctttctaactttactagtctggctgctttggcaaattcctgtcgctttcagctattctagtctagctcactccaaacttaaacgtactctcattctcacactgacatccatctgcggcggtcttggtggaagttttggagtcgcttggaacgatttaaaaaatcctcgctttcagctagcctcctacacctttgcgattttcctaggtttcatcacctcgggactactgttcggctatatcttgctcaattggttatcaaagttcctgccttttctagcgggaacataatccaaatagcctgaaaatttctgtatttggtataaaaaacaggttgataaaatagaaaaattagggtataataaaggttattgaattgggtctaagcatttgcttattacccctaaagcccttatctacggcaatagataagggcctttttacattctctagatattgaacacaggggcggcagaactatttctttctgcggcgtgtcgggaaccggcgtggtttcttcgcgctgctcttacgacttttgatagtatcaaaccagcaaaaaactttcaaagtaagataaagaacactgaaaaagacctttctttaagttgatccccattgacaaaattgaaaaaataggatataataagagctccagaattggttttaagccattgcttattaccccaaagcccttatctacggcaatagataagggctttttacgttctctatatattgaacacaggggcgcagaattatttctttctgcggcgtgtcgggaaccggcgtggttttttcgcgctgttcttacgacttctgatagtatcaaaccagcagtcaatacatttataaaaaatatatgacagaactgacttgacaacataaagaatgatatcccagaattgacttaccattacactaccccctttcgttaaagatgcattgattcctagtccatcaggactctaaatcaacactagaaagggagcttgttttagattgagctcacaatcttttccatgcataagatcacctcctttattgatgcgttcataagtctgtccaaacaaaaaaagccacactcgtagcttgccatttgaacacctgtgaaatcagaattttttccaactggaaataccttctgattcgacattcatttgttcagcaaaaaagacctctcaaacaagttcaaagcacaccaaaaaccgattctactaacaaaacatcctatgtagtcagttttgagaaaatctttcttagtgttcttcaagccatagcccgaaaagtcataatattaccgatagtcataaatgtctaagctgttacataaaatctttcaaaataccaatcccttagcttcgtagattgtttttctgtattttggcactatctcttaagcagtctaagtctcagtaaagattagaaagtcagttcttaaagatagaatgaagccgacaggcctcatacccaactgaaaagtaataaataatttatacatgttcattatactacatctcaaatgattgtcaagacagtaaaaacggaaaggtaagtttctttccgtttttaca Mask Tandem Repeat Region ================================================ tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Find is-nt database================================================ Query_seq: SSA_0159:SSA_0160|SSA_0159:SSA_0160:hypothetical protein:hypothetical protein:->->:157117..158874 1758 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0159:SSA_0160|SSA_0159:SSA_0160:hypothetical protein:hypothetical protein:->->:157117..158874 1758 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0159:SSA_0160|SSA_0159:SSA_0160:hypothetical protein:hypothetical protein:->->:157117..158874 1758 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 53 End: 166 .................................................... M R C S I M N M Y K L F I T F Q L G M R P V G F I L S L R T D F L I F T E T ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 302 End: 415 ............................................................................................................................................................................................................................................................................................................. M K N T K K D F L K T D Y I G C F V S R I G F W C A L N L F E R S F L L N K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 426 End: 518 ......................................................................................................................................................................................................................................................................................................................................................................................................................................... M R R Y F Q L E K I L I S Q V F K W Q A T S V A F F V W T D L ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 52 Strand: + Start: 419 End: 574 .................................................................................................................................................................................................................................................................................................................................................................................................................................. M S N Q K V F P V G K N S D F T G V Q M A S Y E C G F F C L D R L M N A S I K E V I L C M E K I V S S I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 490 End: 603 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M W L F L F G Q T Y E R I N K G G D L M H G K D C E L N L K Q A P F L V L I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 625 End: 813 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M N A S L T K G G S V M V S Q F W D I I L Y V V K S V L S Y I F Y K C I D C W F D T I R S R K N S A K K P R R F P T R R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 677 End: 1024 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S F F M L S S Q F C H I F F I N V L T A G L I L S E V V R T A R K N H A G S R H A A E R N N S A P L C S I Y R E R K K .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 1005 End: 1094 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K V F C W F D T I K S R K S S A K K P R R F P T R R R K K ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: + Start: 1024 End: 1122 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I L S K V V R A A R R N H A G S R H A A E R N S S A A P V F N I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 1223 End: 1324 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F L F Y Q P V F Y T K Y R N F Q A I W I M F P L E K A G T L I T N .................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 1231 End: 1335 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L S T C F L Y Q I Q K F S G Y L D Y V P A R K G R N F D N Q L S K I ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 1419 End: 1508 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V P S D S K T S T K T A A D G C Q C E N E S T F K F G V S .......................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 1522 End: 1662 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K A T G I C Q S S Q T S K V R K G C C W I K L E I N K L P L R L Y F F L F Y P K K G Q K S N ................................................................................................ Protein_Len: 60 Strand: - Start: 1287 End: 1601 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N W A V G F S G G L G G C I S T L T L I L T R K L K S H A L S S Y S F A V P I Q W L L W V L L T L F P H Q Q I F S S I M ............................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1273 End: 1467 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ N G S S F A P V K I V L Q A L Y L R V T T G L H H F R P F D C L H L L S A S L S S K K F R E L R S W F K W W S R R L H M ................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 1118 End: 1216 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y R S F T F L G K D I A T S L P K L P L L C I S L G L E I V K I M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: - Start: 1036 End: 1146 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F D Y S C R S S V V G T G S V G C F S I T R G G R H E I D L S H L F A R M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 998 End: 1087 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R V K F T K Q Q N S V I L L R L L L A F F G R R N G V R R M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 966 End: 1121 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S L S L D K E T N K I K S Q F N K A P K I S D F T T L A A R L F W A P E R C A A S L F L E A A G T N L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 723 End: 863 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L H I S Q Q N S V I L L R L F L A F F G R R N G V R R L F F Y N Q A G T N L I Y L V Y F A R M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 712 End: 966 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P E R C A A S L F L E A G R H E I Y L S R L F G K D I A T S L P K P T I L L P K F G I R S S K N Y G I K E I K D I P I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 257 End: 475 ................................................................................................................................................................................................................................................................ I A Q L V S L F I K E F S V V Y S T K N T S D T K P T S Q V Q K L P R K Q Q V F S H R I L L Y K W N S F I R I E C T N M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 93 Start: 928 End: 957 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAAAATTGAAAAAATAGGATATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 92 Start: 1212 End: 1241 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAATAGAAAAATTAGGGTATAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 1632 End: 1661 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTTTTGCCCTTTCTTGGGATAAAAT................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 254 End: 283 .............................................................................................................................................................................................................................................................TTAGACATTTATGACTATCGGTAATATTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 1004 End: 1033 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGTTTTTTGCTGGTTTGATACTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 1704 End: 1733 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAAAGTATAATGTTTTTATAATACT......................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 72 HP_score: -7.7 Tail_Score: -3.76232 Start: 108 End: 125 Full_Region: CTTTTCAGTTGGGTA TGAGGCC TGTC GGCTTCA TTCTATCTTTAAGAA ...........................................................................................................TGAGGCCTGTCGGCTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 91 HP_score: -4.5 Tail_Score: -5.95539 Start: 483 End: 496 Full_Region: GTGTTCAAATGGCAA GCTAC GAGT GTGGC TTTTTTTGTTTGGAC ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGAGTGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 70 HP_score: -3.1 Tail_Score: -5.04987 Start: 781 End: 801 Full_Region: ttatttctttctgcg gcgtgtcgg gaa ccggcgtgg ttttttcgcgctgtt ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtgtcgggaaccggcgtgg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -13.6 Tail_Score: -3.62096 Start: 856 End: 883 Full_Region: TAGAGAACGTAAAAA GCCCTTATCTAT TGCC GTAGATAAGGGC TTTGGGGTAATAAGC .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTATCTATTGCCGTAGATAAGGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -12.9 Tail_Score: -4.79756 Start: 856 End: 883 Full_Region: gcttattaccccaaa gcccttatcta cggcaa tagataagggc tttttacgttctcta .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcccttatctacggcaatagataagggc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -9.4 Tail_Score: -4.79756 Start: 1138 End: 1167 Full_Region: gcttattacccctaa agcccttatcta cggcaa tagataagggcc tttttacattctcta .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agcccttatctacggcaatagataagggcc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 93 HP_score: -12.9 Tail_Score: -3.46769 Start: 1139 End: 1166 Full_Region: cttattacccctaaa gcccttatcta cggcaa tagataagggc ctttttacattctct ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcccttatctacggcaatagataagggc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -13.6 Tail_Score: -3.58343 Start: 1139 End: 1166 Full_Region: AGAGAATGTAAAAAG GCCCTTATCTAT TGCC GTAGATAAGGGC TTTAGGGGTAATAAG ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTATCTATTGCCGTAGATAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 71 HP_score: -7.2 Tail_Score: -3.97406 Start: 1679 End: 1693 Full_Region: AAAACAAGGTCTTCT GCTTTA TCA TAAAGC TTTATGAGATTTTGA ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATCATAAAGC................................................................. Find igs database================================================ Query_seq: SSA_0159:SSA_0160|SSA_0159:SSA_0160:hypothetical protein:hypothetical protein:->->:157117..158874 1758 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Intra-Species Hit: Count: 2 Min: 1 Max: 1758 Len: 1758 Subject: NC_009009_SSA_0159_SSA_0160|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[157117,158874]|1758 HSP 1 e-value: 0.0 bit: 3443.0 Len: 1758 Query Start:1 Query End:1758 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1758 tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggcnnnnnnngtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt tgtaaaaacggaaagaaacttacctttccgtttttactgtcttgacaatcatttgagatgtagtataatgaacatgtataaattatttattacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtcttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggctttttttgtttggacagacttatgaacgcatcaataaaggaggtgatcttatgcatggaaaagattgtgagctcaatctaaaacaagctccctttctagtgttgatttagagtcctgatggactaggaatcaatgcatctttaacgaaagggggtagtgtaatggtaagtcaattctgggatatcattctttatgttgtcaagtcagttctgtcatatattttttataaatgtattgactgctggtttgatactatcagaagtcgtaagaacagcgcgaaaaaaccacgccggttcccgacacgccgcagaaagaaataattctgcgcccctgtgttcaatatatagagaacgtaaaaagcccttatctattgccgtagataagggctttggggtaataagcaatggcttaaaaccaattctggagctcttattatatcctattttttcaattttgtcaatggggatcaacttaaagaaaggtctttttcagtgttctttatcttactttgaaagttttttgctggtttgatactatcaaaagtcgtaagagcagcgcgaagaaaccacgccggttcccgacacgccgcagaaagaaatagttctgccgcccctgtgttcaatatctagagaatgtaaaaaggcccttatctattgccgtagataagggctttaggggtaataagcaaatgcttagacccaattcaataacctttattataccctaatttttctattttatcaacctgttttttataccaaatacagaaattttcaggctatttggattatgttcccgctagaaaaggcaggaactttgataaccaattgagcaagatatagccgaacagtagtcccgaggtgatgaaacctaggaaaatcgcaaaggtgtaggaggctagctgaaagcgaggattttttaaatcgttccaagcgactccaaaacttccaccaagaccgccgcagatggatgtcagtgtgagaatgagagtacgtttaagtttggagtgagctagactagaatagctgaaagcgacaggaatttgccaaagcagccagactagtaaagttagaaagggatgttgttggataaaactggaaatcaataaactgcctcttaggttatatttcttcttattttatcccaagaaagggcaaaaatcaaactaaaacaaggtcttctgctttatcataaagctttatgagattttgataaagtataatgtttttataatacttaaaatagagaaaaggataggattt Subject: NC_009009_SSA_2205_SSA_2207|Transcription antitermination factor NusG, putative:hypothetical protein|NEGATIVE:NEGATIVE|[2206191,2206957]|767 HSP 1 e-value: 0.0 bit: 706.0 Len: 407 Query Start:90 Query End:496 Subject Strand: POSITIVE Subject Start: 191 Subject End: 598 .........................................................................................ttacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctaatctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctaagggattggtattttgaaagattttatgtaacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttctcaaaactgactacataggatgttttgttagtagaatcggtttttggtgtgctttgaacttgtttgagaggtc-ttttttgctgaacaaatgaatgtcgaatcagaaggtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctacgagtgtggc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .........................................................................................ttacttttcagttgggtatgaggcctgtcggcttcattctatctttaagaactgactttctactctttactgagacttagactgcttaagagatagtgccaaaatacagaaaaacaatctacgaagctatgggattggtattttgaaagattttgtgtgacagcttagacatttatgactatcggtaatattatgacttttcgggctatggcttgaagaacactaagaaagattttttcaaaactgactacataggatgttttgttattagaatcgctttttggtgtgctttgaacttgtttgaagggtctttttttgctgaacaaatgaatgtcgaatcagaaagtatttccagttggaaaaaattctgatttcacaggtgttcaaatggcaagctgcgagtgtggc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUAAAAACGGAAAGAAACUUACCUUUCCGUUUUUACUGUCUUGACAAUCAUUUGAGAUGUAGUAUAAUGAACAUGUAUAAAUUAUUUAUUACUUUUCAGUUGGGUAUGAGGCCUGUCGGCUUCAUUCUAUCUUUAAGAACUGACUUUCUAAUCUUUACUGAGACUUAGACUGCUUAAGAGAUAGUGCCAAAAUACAGAAAAACAAUCUACGAAGCUAAGGGAUUGGUAUUUUGAAAGAUUUUAUGUAACAGCUUAGACAUUUAUGACUAUCGGUAAUAUUAUGACUUUUCGGGCUAUGGCUUGAAGAACACUAAGAAAGAUUUUCUCAAAACUGACUACAUAGGAUGUUUUGUUAGUAGAAUCGGUUUUUGGUGUGCUUUGAACUUGUUUGAGAGGUCUUUUUUGCUGAACAAAUGAAUGUCGAAUCAGAAGGUAUUUCCAGUUGGAAAAAAUUCUGAUUUCACAGGUGUUCAAAUGGCAAGCUACGAGUGUGGCUUUUUUUGUUUGGACAGACUUAUGAACGCAUCAAUAAAGGAGGUGAUCUUAUGCAUGGAAAAGAUUGUGAGCUCAAUCUAAAACAAGCUCCCUUUCUAGUGUUGAUUUAGAGUCCUGAUGGACUAGGAAUCAAUGCAUCUUUAACGAAAGGGGGUAGUGUAAUGGUAAGUCAAUUCUGGGAUAUCAUUCUUUAUGUUGUCAAGUCAGUUCUGUCAUAUAUUUUUUAUAAAUGUAUUGACUGCUGGUUUGAUACUAUCAGAAGUCGUAAGAACAGCGCGAAAAAACCACGCCGGUUCCCGACACGCCGCAGAAAGAAAUAAUUCUGCGCCCCUGUGUUCAAUAUAUAGAGAACGUAAAAAGCCCUUAUCUAUUGCCGUAGAUAAGGGCUUUGGGGUAAUAAGCAAUGGCUUAAAACCAAUUCUGGAGCUCUUAUUAUAUCCUAUUUUUUCAAUUUUGUCAAUGGGGAUCAACUUAAAGAAAGGUCUUUUUCAGUGUUCUUUAUCUUACUUUGAAAGUUUUUUGCUGGUUUGAUACUAUCAAAAGUCGUAAGAGCAGCGCGAAGAAACCACGCCGGUUCCCGACACGCCGCAGAAAGAAAUAGUUCUGCCGCCCCUGUGUUCAAUAUCUAGAGAAUGUAAAAAGGCCCUUAUCUAUUGCCGUAGAUAAGGGCUUUAGGGGUAAUAAGCAAAUGCUUAGACCCAAUUCAAUAACCUUUAUUAUACCCUAAUUUUUCUAUUUUAUCAACCUGUUUUUUAUACCAAAUACAGAAAUUUUCAGGCUAUUUGGAUUAUGUUCCCGCUAGAAAAGGCAGGAACUUUGAUAACCAAUUGAGCAAGAUAUAGCCGAACAGUAGUCCCGAGGUGAUGAAACCUAGGAAAAUCGCAAAGGUGUAGGAGGCUAGCUGAAAGCGAGGAUUUUUUAAAUCGUUCCAAGCGACUCCAAAACUUCCACCAAGACCGCCGCAGAUGGAUGUCAGUGUGAGAAUGAGAGUACGUUUAAGUUUGGAGUGAGCUAGACUAGAAUAGCUGAAAGCGACAGGAAUUUGCCAAAGCAGCCAGACUAGUAAAGUUAGAAAGGGAUGUUGUUGGAUAAAACUGGAAAUCAAUAAACUGCCUCUUAGGUUAUAUUUCUUCUUAUUUUAUCCCAAGAAAGGGCAAAAAUCAAACUAAAACAAGGUCUUCUGCUUUAUCAUAAAGCUUUAUGAGAUUUUGAUAAAGUAUAAUGUUUUUAUAAUACUUAAAAUAGAGAAAAGGAUAGGAUUU .((((((((((((((........)))))))))))))).((((((.(....((((((((.(((((.((.(((....(((............))).((((((((.((.((((((((....)))))))).))...(((((.(((...((((((((.(((((((.((.((..(.((((((....(((((((.((((...(((.....((((((.(........))))))).......((((((((((........((...(((((((((.....(((((((......((((((((((((...((.(..(((.((((((((((.((((((((((((((...((....))...))))))..)).))))))..)))))))))).)))..).)).))))))))))))....)))))))....))))))))).((((((((....(((((....)))))...))))))))(((.(((((((((((..(.(((((((....)))))))...)..)))))))..)))).)))..)).....((((((((((((....((((.(((((((((((..((((((........(((.((((((((((..((((((((((..(((((....)))))..)))))))))).........))))))))))..)))..((((((((((..(((((.....(((.....))).((((((..((((...(((((((((((.....))))))).)))).))))..))))))...))))).((((...((((.(((.(.......).)))..)))).))))..((.((((((........))))))(((((...((((..........))))....(((((((((((((((....)))))))))))))))))))).....))..))))))...))))......))))))........(((((((....((....))..)))))))...............)))))))))))))))...))))))).))))))))))))))).))).)))).)))))))....((((...((((.(((.(.......).)))..)))).))))..((.((((((........)))))).)).(((((.((((.(((((((.((((.....(((((((((((((((....)))))))))))))))..((((..(((((....))))).)))).)))).....((((..(((((((...(((((((((((((((((..((((.(((......))).)))).....(((.((((((((((((((.(((((.(((......))).)))))..))))..))).(((.((........)))))..))))).)).))).))))))))..)))))))))......)))))))))))((((((.(..((((.((....))...))))(((((((.((((((...((..(((...(((..(((....)))..))).)))..))..)).))))........))))))).).)))))).)))).)))..))))....))))).........)))))).))).)))))))))))))))))....))).)))))...)))))))).))).)).))))).))))))))....((((((..(((((((.(((......))).................(((((((((..((((((...)))))).....)))))))))....(((((.(((....))).))))))))))))))))))..).)))))).. (-516.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAUCCUAUCCUUUUCUCUAUUUUAAGUAUUAUAAAAACAUUAUACUUUAUCAAAAUCUCAUAAAGCUUUAUGAUAAAGCAGAAGACCUUGUUUUAGUUUGAUUUUUGCCCUUUCUUGGGAUAAAAUAAGAAGAAAUAUAACCUAAGAGGCAGUUUAUUGAUUUCCAGUUUUAUCCAACAACAUCCCUUUCUAACUUUACUAGUCUGGCUGCUUUGGCAAAUUCCUGUCGCUUUCAGCUAUUCUAGUCUAGCUCACUCCAAACUUAAACGUACUCUCAUUCUCACACUGACAUCCAUCUGCGGCGGUCUUGGUGGAAGUUUUGGAGUCGCUUGGAACGAUUUAAAAAAUCCUCGCUUUCAGCUAGCCUCCUACACCUUUGCGAUUUUCCUAGGUUUCAUCACCUCGGGACUACUGUUCGGCUAUAUCUUGCUCAAUUGGUUAUCAAAGUUCCUGCCUUUUCUAGCGGGAACAUAAUCCAAAUAGCCUGAAAAUUUCUGUAUUUGGUAUAAAAAACAGGUUGAUAAAAUAGAAAAAUUAGGGUAUAAUAAAGGUUAUUGAAUUGGGUCUAAGCAUUUGCUUAUUACCCCUAAAGCCCUUAUCUACGGCAAUAGAUAAGGGCCUUUUUACAUUCUCUAGAUAUUGAACACAGGGGCGGCAGAACUAUUUCUUUCUGCGGCGUGUCGGGAACCGGCGUGGUUUCUUCGCGCUGCUCUUACGACUUUUGAUAGUAUCAAACCAGCAAAAAACUUUCAAAGUAAGAUAAAGAACACUGAAAAAGACCUUUCUUUAAGUUGAUCCCCAUUGACAAAAUUGAAAAAAUAGGAUAUAAUAAGAGCUCCAGAAUUGGUUUUAAGCCAUUGCUUAUUACCCCAAAGCCCUUAUCUACGGCAAUAGAUAAGGGCUUUUUACGUUCUCUAUAUAUUGAACACAGGGGCGCAGAAUUAUUUCUUUCUGCGGCGUGUCGGGAACCGGCGUGGUUUUUUCGCGCUGUUCUUACGACUUCUGAUAGUAUCAAACCAGCAGUCAAUACAUUUAUAAAAAAUAUAUGACAGAACUGACUUGACAACAUAAAGAAUGAUAUCCCAGAAUUGACUUACCAUUACACUACCCCCUUUCGUUAAAGAUGCAUUGAUUCCUAGUCCAUCAGGACUCUAAAUCAACACUAGAAAGGGAGCUUGUUUUAGAUUGAGCUCACAAUCUUUUCCAUGCAUAAGAUCACCUCCUUUAUUGAUGCGUUCAUAAGUCUGUCCAAACAAAAAAAGCCACACUCGUAGCUUGCCAUUUGAACACCUGUGAAAUCAGAAUUUUUUCCAACUGGAAAUACCUUCUGAUUCGACAUUCAUUUGUUCAGCAAAAAAGACCUCUCAAACAAGUUCAAAGCACACCAAAAACCGAUUCUACUAACAAAACAUCCUAUGUAGUCAGUUUUGAGAAAAUCUUUCUUAGUGUUCUUCAAGCCAUAGCCCGAAAAGUCAUAAUAUUACCGAUAGUCAUAAAUGUCUAAGCUGUUACAUAAAAUCUUUCAAAAUACCAAUCCCUUAGCUUCGUAGAUUGUUUUUCUGUAUUUUGGCACUAUCUCUUAAGCAGUCUAAGUCUCAGUAAAGAUUAGAAAGUCAGUUCUUAAAGAUAGAAUGAAGCCGACAGGCCUCAUACCCAACUGAAAAGUAAUAAAUAAUUUAUACAUGUUCAUUAUACUACAUCUCAAAUGAUUGUCAAGACAGUAAAAACGGAAAGGUAAGUUUCUUUCCGUUUUUACA ..........................(((.(((((.(((((((((....((((((...((((((....))))))((((((((......)))))))).))))))...((((...(((((((.....................)))))))))))((((((((.(((.((((((((((.((.(((.(..(((((((((((((((((.((((((((((.(((........(((((.............((.((((((.((((((((.......(......).(((.(((...(((..((......))..)))...))))))..)))))))).((..(((.............)))..))....)))))).))...........)))))..((((((((......)))).)))).........((((.(((((((((.....((((......((((((((........)))))))).........(((.(((((...((((((((((((..........))))).......)))))))..))))).)))......((((...((((.((((.(((((....)))))..)))).....(((((((((((......)))))))))))........))))....(((((((.........((.((((((........)))))).))..(((((((..((((((((.....)))))))).)))..))))......))))))).)))).......)))).....)))))))))(((((((((((.(((((..((((((...((..((....))..)).(((((((....(((((((........((....((((((((((((..(((...........((((.(((((((((((((......))))))))))))).....((((..........))))...)))).((((((........)))))))))..(((((((((.(((((((.....))))))))))))..))))...................((.((((.((.((((.....)))).)))))).(((((...((((.........(((((.((((...((..(((((((.............(((((((.....((.((..((((((...(((((....)))))...)))))))))).))))))).((.((....((((((......))))))....)).)).)))).)))..)).......)))))))))....((((.............((((.((....)).)))).....(((((((...((((((((((((...(((((....)))))....)))))))......))))).)))))))......))))...))))...)))))...))......)))))))))))).))........)))))))....))))))).)))))).))))).)))))))))))..))))...)))......((((.(((((....(((((((....(((...((((((...............................))))))))).))))))).....))))).))))..........))))))))..)).)).))))))).))))))))..)))).))...))))).((((.(((....))).))))....))))).))).))))))))....)))).)))))..))))).)))......................(((((((((((((((......))))))))))))))). (-448.35) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 415 1086 1041 226 177 NC_009009:SSA_1822|5end_hypothetical_protein_1811125..1811355_NEGATIVE 412 888 855 166 133 NC_009009:SSA_2207|5end_hypothetical_protein_2207221..2207451_NEGATIVE 397 1109 1061 60 6 NC_009009:SSA_1932|5end_Biotin_carboxylase,_putative_1920874..1921104_NEGATIVE 375 829 784 185 140 NC_009009:SSA_1203|5end_hypothetical_protein_1226985..1227215_POSITIVE 366 1560 1511 179 133 NC_009009:SSA_0397|5end_hypothetical_protein_394657..394887_NEGATIVE 362 1108 1068 44 1 NC_009009:SSA_0956|5end_surface_protein_D_961223..961453_POSITIVE 360 1469 1421 231 173 NC_009009:SSA_1487|5end_Conserved_uncharacterized_protein_1494190..1494420_NEGATIVE 357 1106 1062 58 11 NC_009009:SSA_1855|5end_hypothetical_protein_1852051..1852281_NEGATIVE 355 1086 1048 196 146 NC_009009:SSA_0778|5end_Glycogen_synthase,_putative_760566..760796_POSITIVE 350 1110 1065 227 179 NC_009009:SSA_1721|5end_DNA_polymerase_III,_delta'_subunit,_putative_1708028..1708258_NEGATIVE 350 329 283 143 94 NC_009009:SSA_0832|5end_SecY-like_protein,_putative_816708..816938_POSITIVE 344 1543 1503 154 108 NC_009009:SSA_1644|5end_hypothetical_protein_1645617..1645847_NEGATIVE 339 1088 1041 140 74 NC_009009:SSA_0977|5end_3-isopropylmalate_dehydrogenase,_putative_982771..983001_POSITIVE 339 1093 1051 70 15 NC_009009:SSA_0822|5end_Large_conductance_mechano-sensitive_ion_channel,_putative_801972..802202_NEGATIVE 338 1085 1045 231 183 NC_009009:SSA_0516|5end_AmiR_two-component_response_regulator_with_transcriptional_antiterminator_output_domain,_putative_514485..514715_POSITIVE 334 1554 1511 67 27 NC_009009:SSA_2242|5end_hypothetical_protein_2238663..2238893_NEGATIVE 331 1089 1041 175 124 NC_009009:SSA_0102|5end_Kinase,_putative_104035..104265_POSITIVE 330 567 522 181 141 NC_009009:SSA_0228|5end_hypothetical_protein_223363..223593_POSITIVE 326 807 773 220 180 NC_009009:SSA_0017|5end_Cell_shape_determining_protein_MreC,_putative_22811..23041_POSITIVE 325 1085 1045 44 2 NC_009009:SSA_0794|5end_Zn-dependent_protease,_putative_775896..776126_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 458 888 841 79 35 NC_009009:SSA_2206|3end_hypothetical_protein_2207275..2207425_POSITIVE 371 1397 1353 144 97 NC_009009:SSA_2170|3end_hypothetical_protein_2169557..2169707_NEGATIVE 366 130 83 140 91 NC_009009:SSA_0093|3end_V-type_sodium_ATPase,_subunit_D,_putative_94989..95139_POSITIVE 357 1409 1380 137 108 NC_009009:SSA_0956|3end_surface_protein_D_965418..965568_POSITIVE 350 329 283 110 61 NC_009009:SSA_0831|3end_Nucleotide_sugar_synthetase-like_protein,_putative_816755..816905_POSITIVE 346 1107 1062 141 101 NC_009009:SSA_1960|3end_hypothetical_protein_1956571..1956721_NEGATIVE 345 140 96 71 29 NC_009009:SSA_2380|3end_hypothetical_protein_2385665..2385815_NEGATIVE 340 1087 1046 49 2 NC_009009:SSA_1602|3end_Exoribonuclease,_VacB/Rnb_family,_putative_1607022..1607172_NEGATIVE 333 525 483 140 104 NC_009009:SSA_2052|3end_Thioredoxin,_putative_2057193..2057343_NEGATIVE 321 1564 1528 59 28 NC_009009:SSA_1982|3end_Transcriptional_regulator,_LytR/AlgR_family,_putative_1975427..1975577_NEGATIVE 320 1474 1443 133 97 NC_009009:SSA_2340|3end_hypothetical_protein_2341539..2341689_NEGATIVE 319 796 759 84 49 NC_009009:SSA_2161|3end_NTP_pyrophosphohydrolases_including_oxidative_damage_repair_enzymes,_putative_2160151..2160301_NEGATIVE 315 1088 1046 62 10 NC_009009:SSA_1248|3end_hypothetical_protein_1272355..1272505_NEGATIVE 315 1556 1520 65 27 NC_009009:SSA_0756|3end_Alanyl-tRNA_synthetase,_putative_739434..739584_POSITIVE 313 1176 1131 85 34 NC_009009:SSA_0715|3end_DNA_uptake_protein,_putative_701486..701636_POSITIVE 313 1380 1332 100 41 NC_009009:SSA_0066|3end_hypothetical_protein_68095..68245_POSITIVE 312 1409 1365 48 6 NC_009009:SSA_0261|3end_ABC-type_Mn2+/Zn2+_transport_systems,_permease_component,_putative_254605..254755_NEGATIVE 311 1485 1441 73 31 NC_009009:SSA_1429|3end_hypothetical_protein_1436355..1436505_NEGATIVE 311 160 113 72 29 NC_009009:SSA_0971|3end_Conserved_uncharacterized_protein_980069..980219_POSITIVE 307 508 465 134 96 NC_009009:SSA_1830|3end_Aminoglycoside_phosphotransferase,_putative_1821191..1821341_POSITIVE