Origin IGS: agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agaactattatagcagaaaataaggcagaggaagcaaatctaatccatgtctgaacacaaaaaaagaccaccggattgggtggcctttatgggagattattatgaaaaagtttaggatttctatcaaataaagttaggaggtcttcatttgatactcatagtatactgcccctaacttaaagaaaccttaactttgtataacgtatcctttaaaatttaacatttgagttacaatccgatatacttcctgtcttattctaaaatttgagcaaaaaaagaccaccggattgggtggcctttatgggagattattatgaaaaagtttaggattatcaaacaaagttagggggcttcatttgatactcatagtatactgctcttagcttaagaaaaacttaaagtaaaattcagttagcaaaaaaaattttgcttttgattgtggagcctttttccttgcttaagattggctactgaaaacatagtctctgaaaactggacaaagaaaaacggcagaaggaggtactgccgttttctgtgctctttcgcgattgtttct Mask Tandem Repeat Region ================================================ agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Find is-nt database================================================ Query_seq: SSA_0062:SSA_0063|SSA_0062:SSA_0063:Aldose 1-epimerase, putative:Holliday junction DNA helicase ruvB, putative:->->:64919..65474 556 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SSA_0062:SSA_0063|SSA_0062:SSA_0063:Aldose 1-epimerase, putative:Holliday junction DNA helicase ruvB, putative:->->:64919..65474 556 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SSA_0062:SSA_0063|SSA_0062:SSA_0063:Aldose 1-epimerase, putative:Holliday junction DNA helicase ruvB, putative:->->:64919..65474 556 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Predict ORF larger than 30AA ================================================ Protein_Len: 45 Strand: + Start: 8 End: 142 ....... M A K E H R K R Q Y L L L P F F F V Q F S E T M F S V A N L K Q G K R L H N Q K Q N F F C .............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 274 End: 366 ................................................................................................................................................................................................................................................................................. M V F F C S N F R I R Q E V Y R I V T Q M L N F K G Y V I Q S .............................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 430 End: 546 ............................................................................................................................................................................................................................................................................................................................................................................................................................................. M I E I L N F F I I I S H K G H P I R W S F F V F R H G L D L L P L P Y F L L .......... Protein_Len: 40 Strand: - Start: 1 End: 120 S V I A F S C L F R C Y R R R G N K K T W N E S V I N E T A L R L C P F L S W M .................................................................................................................................................................................................................................................................................................................................................................................................................................................... agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 312 End: 341 .......................................................................................................................................................................................................................................................................................................................TTTAACATTTGAGTTACAATCCGATATACT....................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 429 End: 458 ............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAGAAATCCTAAACTTTTTCATAAT.................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 220 End: 249 ...........................................................................................................................................................................................................................TTTGATAATCCTAAACTTTTTCATAATAAT................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 341 End: 370 ....................................................................................................................................................................................................................................................................................................................................................CTTAACTTTGTATAACGTATCCTTTAAAAT.......................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 61 HP_score: -7.3 Tail_Score: -2.62935 Start: 20 End: 59 Full_Region: tctctgaaaactgga caaagaaaaacggcagaa ggagg tactgccgttttctgtg ctctttcgcgattgt ...................caaagaaaaacggcagaaggaggtactgccgttttctgtg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 63 HP_score: -6.9 Tail_Score: -2.97021 Start: 24 End: 54 Full_Region: gaaaactggacaaag aaaaacggcagaa ggagg tactgccgttttc tgtgctctttcgcga .......................aaaaacggcagaaggaggtactgccgttttc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 76 HP_score: -6.8 Tail_Score: -4.62051 Start: 29 End: 49 Full_Region: ctggacaaagaaaaa cggcagaa ggagg tactgccg ttttctgtgctcttt ............................cggcagaaggaggtactgccg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 74 HP_score: -6.2 Tail_Score: -4.48987 Start: 127 End: 142 Full_Region: agtaaaattcagtta gcaaaa aaaa ttttgc ttttgattgtggagc ..............................................................................................................................gcaaaaaaaattttgc.............................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 93 HP_score: -7.1 Tail_Score: -5.52986 Start: 260 End: 279 Full_Region: ATAATCTCCCATAAA GGCCACC CAATCC GGTGGTC TTTTTTTGCTCAAAT ...................................................................................................................................................................................................................................................................GGCCACCCAATCCGGTGGTC..................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 59 HP_score: -4.9 Tail_Score: -3.88137 Start: 260 End: 279 Full_Region: atttgagcaaaaaaa gaccacc ggattg ggtggcc tttatgggagattat ...................................................................................................................................................................................................................................................................gaccaccggattgggtggcc..................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -7.1 Tail_Score: -5.80817 Start: 472 End: 491 Full_Region: ATAATCTCCCATAAA GGCCACC CAATCC GGTGGTC TTTTTTTGTGTTCAG .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACCCAATCCGGTGGTC................................................................. TransTerm Strand: - Conf: 59 HP_score: -4.9 Tail_Score: -3.88137 Start: 472 End: 491 Full_Region: ctgaacacaaaaaaa gaccacc ggattg ggtggcc tttatgggagattat .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaccaccggattgggtggcc................................................................. Find igs database================================================ Query_seq: SSA_0062:SSA_0063|SSA_0062:SSA_0063:Aldose 1-epimerase, putative:Holliday junction DNA helicase ruvB, putative:->->:64919..65474 556 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Intra-Species Hit: Count: 2 Min: 1 Max: 556 Len: 556 Subject: NC_009009_SSA_0062_SSA_0063|Aldose 1-epimerase, putative:Holliday junction DNA helicase ruvB, putative|POSITIVE:POSITIVE|[64919,65474]|556 HSP 1 e-value: 0.0 bit: 971.0 Len: 556 Query Start:1 Query End:556 Subject Strand: POSITIVE Subject Start: 1 Subject End: 556 agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaannnnnnnngctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtcnnnnnnngctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtcnnnnnnngtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct agaaacaatcgcgaaagagcacagaaaacggcagtacctccttctgccgtttttctttgtccagttttcagagactatgttttcagtagccaatcttaagcaaggaaaaaggctccacaatcaaaagcaaaattttttttgctaactgaattttactttaagtttttcttaagctaagagcagtatactatgagtatcaaatgaagccccctaactttgtttgataatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgctcaaattttagaataagacaggaagtatatcggattgtaactcaaatgttaaattttaaaggatacgttatacaaagttaaggtttctttaagttaggggcagtatactatgagtatcaaatgaagacctcctaactttatttgatagaaatcctaaactttttcataataatctcccataaaggccacccaatccggtggtctttttttgtgttcagacatggattagatttgcttcctctgccttattttctgctataatagttct Subject: NC_009009_SSA_2184_SSA_2185|hypothetical protein:Adenylosuccinate synthetase, putative|NEGATIVE:NEGATIVE|[2183845,2184087]|243 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 44 Query Start:210 Query End:253 Subject Strand: NEGATIVE Subject Start: 94 Subject End: 137 .................................................................................................................................................................................................................cctaactttgtttgataatcctaaactttttcataataatctcc............................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................cctaactttgtttaaaaatcctaaactttttcataataatctcc............................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-9 bit: 63.9 Len: 54 Query Start:412 Query End:465 Subject Strand: NEGATIVE Subject Start: 94 Subject End: 144 ...........................................................................................................................................................................................................................................................................................................................................................................................................................aagacctcctaactttatttgatagaaatcctaaactttttcataataatctcc........................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................aagacctcctaactttgtttaa---aaatcctaaactttttcataataatctcc........................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAAACAAUCGCGAAAGAGCACAGAAAACGGCAGUACCUCCUUCUGCCGUUUUUCUUUGUCCAGUUUUCAGAGACUAUGUUUUCAGUAGCCAAUCUUAAGCAAGGAAAAAGGCUCCACAAUCAAAAGCAAAAUUUUUUUUGCUAACUGAAUUUUACUUUAAGUUUUUCUUAAGCUAAGAGCAGUAUACUAUGAGUAUCAAAUGAAGCCCCCUAACUUUGUUUGAUAAUCCUAAACUUUUUCAUAAUAAUCUCCCAUAAAGGCCACCCAAUCCGGUGGUCUUUUUUUGCUCAAAUUUUAGAAUAAGACAGGAAGUAUAUCGGAUUGUAACUCAAAUGUUAAAUUUUAAAGGAUACGUUAUACAAAGUUAAGGUUUCUUUAAGUUAGGGGCAGUAUACUAUGAGUAUCAAAUGAAGACCUCCUAACUUUAUUUGAUAGAAAUCCUAAACUUUUUCAUAAUAAUCUCCCAUAAAGGCCACCCAAUCCGGUGGUCUUUUUUUGUGUUCAGACAUGGAUUAGAUUUGCUUCCUCUGCCUUAUUUUCUGCUAUAAUAGUUCU .((((((.((..(((((.(((.((((((((((((.........)))))).)))))).)))....))))).)).....))))))..(((((........(((((.(((((((.........(((..(((((((....))))))).((((..(((((.((((((.....)))))).))))).))))......))).(((((((..(((........)))..)))))))........)))))))...............((((((((((......))))))))))..)))))........((((((((.(((((((((.(((.((((.((((......)))).........(((((((......((((((.((((((((..((((((((((((..((((.....))))....)).....))))))))))........))))).))).))))))..................((((((((((......))))))))))...))))))).......)))).))).)))))))..)).))))))))..)))))......... (-141.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAACUAUUAUAGCAGAAAAUAAGGCAGAGGAAGCAAAUCUAAUCCAUGUCUGAACACAAAAAAAGACCACCGGAUUGGGUGGCCUUUAUGGGAGAUUAUUAUGAAAAAGUUUAGGAUUUCUAUCAAAUAAAGUUAGGAGGUCUUCAUUUGAUACUCAUAGUAUACUGCCCCUAACUUAAAGAAACCUUAACUUUGUAUAACGUAUCCUUUAAAAUUUAACAUUUGAGUUACAAUCCGAUAUACUUCCUGUCUUAUUCUAAAAUUUGAGCAAAAAAAGACCACCGGAUUGGGUGGCCUUUAUGGGAGAUUAUUAUGAAAAAGUUUAGGAUUAUCAAACAAAGUUAGGGGGCUUCAUUUGAUACUCAUAGUAUACUGCUCUUAGCUUAAGAAAAACUUAAAGUAAAAUUCAGUUAGCAAAAAAAAUUUUGCUUUUGAUUGUGGAGCCUUUUUCCUUGCUUAAGAUUGGCUACUGAAAACAUAGUCUCUGAAAACUGGACAAAGAAAAACGGCAGAAGGAGGUACUGCCGUUUUCUGUGCUCUUUCGCGAUUGUUUCU ..............(((((.(((.((..((((.(((...........(((((..........((((.(((((.((((.(((((.((((..(((((....(((((..((((((.(((.(((((........((((((((.(((.........((((.....))))...)))))))))))..)))))))).)))))).))))).(((((......((((((.....)))))).......))))).))))).(.((((..........)))))....)))).))))).)))).))))).)))).(.(((((((((...(((((((.....((.(((((((..(((((....)))))..))))))).))..........(((((..(((((((.....))).)))).....((((..(((((((....))))))).))))....))))))))))))...(((.......)))..........))))))))).).....))))).((((((.((((((.........)))))))))))).)))))))..))..)))))))) (-134.22) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 388 548 505 92 43 NC_009009:SSA_2024|5end_hypothetical_protein_2029272..2029502_NEGATIVE 361 97 51 95 36 NC_009009:SSA_0455|5end_Sucrose-6-phosphate_hydrolase,_putative_458450..458680_NEGATIVE 348 54 13 183 143 NC_009009:SSA_2070|5end_Zinc_metalloprotease,_putative_2074574..2074804_NEGATIVE 346 72 32 213 168 NC_009009:SSA_1154|5end_hypothetical_protein_1182661..1182891_POSITIVE 332 48 11 62 21 NC_009009:SSA_0041|5end_hypothetical_protein_47662..47892_POSITIVE 328 545 503 54 19 NC_009009:SSA_0241|5end_Ribosomal_protein_L11_methyltransferase,_putative_234021..234251_POSITIVE 324 288 247 159 114 NC_009009:SSA_1017|5end_hypothetical_protein_1022072..1022302_POSITIVE 324 66 22 131 79 NC_009009:SSA_0020|5end_Ribose-phosphate_pyrophosphokinase_1,_putative_25564..25794_POSITIVE 321 77 31 145 95 NC_009009:SSA_1910|5end_hypothetical_protein_1902672..1902902_NEGATIVE 320 63 30 124 92 NC_009009:SSA_0638|5end_Tryptophan_synthase_alpha_chain,_putative_626935..627165_POSITIVE 320 67 26 169 125 NC_009009:SSA_0067|5end_Acyltransferase_(yrhL-like_subfamily_of_SGNH-hydrolases),_putative_68005..68235_POSITIVE 319 545 505 141 108 NC_009009:SSA_1049|5end_ABC_transporter_membrane-spanning_permease-spermidine/putrescine_transport,_putative_1064085..1064315_POSITIVE 317 88 41 75 31 NC_009009:SSA_0581|5end_Conserved_uncharacterized_protein_573329..573559_POSITIVE 317 80 32 139 94 NC_009009:SSA_0402|5end_Histidine_kinase,_putative_399144..399374_POSITIVE 311 55 16 151 116 NC_009009:SSA_1611|5end_Era-like_GTP-binding_protein,_putative_1616032..1616262_NEGATIVE 310 488 441 143 103 NC_009009:SSA_2216|5end_LPS_biosynthesis_protein,_putative_2218080..2218310_NEGATIVE 307 56 11 79 21 NC_009009:SSA_1922|5end_hypothetical_protein_1912106..1912336_NEGATIVE 305 281 244 213 183 NC_009009:SSA_1196|5end_Acetyltransferase,_GNAT_family,_putative_1222052..1222282_NEGATIVE 305 73 31 231 188 NC_009009:SSA_0964|5end_DEAD_RNA_helicase,_putative_974114..974344_NEGATIVE 304 508 472 63 17 NC_009009:SSA_0568|5end_Aspartyl-tRNA_synthetase_1,_putative_561674..561904_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 461 258 211 145 91 NC_009009:SSA_2162|3end_hypothetical_protein_2160815..2160965_POSITIVE 320 63 30 131 99 NC_009009:SSA_0637|3end_Tryptophan_synthase_beta_chain,_putative_627022..627172_POSITIVE 317 88 41 65 21 NC_009009:SSA_0580|3end_Isochorismatase_family_protein,_putative_573399..573549_POSITIVE 317 80 32 137 92 NC_009009:SSA_0401|3end_Two-component_response_transcriptional_regulator_(CheY-like_receiver_and_winged-helix_DNA-binding_domains),_putative_399222..399372_POSITIVE 311 55 16 84 49 NC_009009:SSA_1612|3end_Diacylglycerol_kinase,_putative_1616099..1616249_NEGATIVE 310 488 441 137 97 NC_009009:SSA_2217|3end_Cps9H,_putative_2218086..2218236_NEGATIVE 307 56 11 65 7 NC_009009:SSA_1923|3end_NADPH-q_uinone_reductase_(modulator_of_drug_activity_B),_putative_1912120..1912270_NEGATIVE 303 307 261 115 63 NC_009009:SSA_1191|3end_hypothetical_protein_1218222..1218372_NEGATIVE 302 104 61 136 99 NC_009009:SSA_1712|3end_Arsenate_reductase_(ArsC),_glutaredoxin_family,_putative_1699731..1699881_NEGATIVE 297 75 31 150 102 NC_009009:SSA_1911|3end_Conserved_uncharacterized_protein_1902665..1902815_NEGATIVE 296 47 9 83 33 NC_009009:SSA_2108|3end_Glyceraldehyde_3-phosphate_dehydrogenase,_putative_2111457..2111607_NEGATIVE 296 518 474 42 2 NC_009009:SSA_1651|3end_hypothetical_protein_1649587..1649737_NEGATIVE 289 509 464 51 1 NC_009009:SSA_2316|3end_General_secretory_pathway_protein_F,_putative_2317116..2317266_NEGATIVE 288 503 463 70 15 NC_009009:SSA_0418|3end_AraC-type_DNA-binding_domain-containing_protein,_putative_416184..416334_POSITIVE 287 60 18 85 49 NC_009009:SSA_0355|3end_DNA_mismatch_repair_protein,_putative_349260..349410_POSITIVE 286 288 247 42 2 NC_009009:SSA_0266|3end_ORFB,_transposon_ISSsa1_260822..260972_POSITIVE 285 58 19 144 96 NC_009009:SSA_0374|3end_Peptide_methionine_sulfoxide_reductase_msrA/msrB,_putative_364178..364328_POSITIVE 284 68 28 39 3 NC_009009:SSA_1897|3end_Ribosomal_protein_HS6-type_(S12/L30/L7a),_putative_1894154..1894304_NEGATIVE 284 505 464 82 36 NC_009009:SSA_0257|3end_N-acetylmuramidase/lysin,_putative_251840..251990_POSITIVE 282 528 485 149 96 NC_009009:SSA_1048|3end_ABC_transporter_ATP-binding_protein-spermidine/putrescine_transport,_putative_1064184..1064334_POSITIVE