Origin IGS: aatcatagcaacagatttatcagctttatcttttcctcctgaaagtggactatttcttaattcaatcaatcctttgttcgtcatttctgcttgaccttcagatttagcagcaatcctcattccataactttctttcccactaagataaatttttccagtaattgcattaataacttttgcatatgtactataccaagtataagtattttgtacatttctcggttgataaacatatattcccatagagttatttccacgaaaatcaattgttccttcattaattaattcttgatattgatgactatttggttcaacatgacctgcacttataccaccatctgaattttcctctacttgggctaatcctactttataacctacatatccatctttactttttttaatattcattttaccagatggcccattaatttctctatctgtaaattcttttatatactgatcatctttttctttaacatctgtaattgttcctgcatttgctaaaattccaccattttcctgagaaactaatgctaaagttagaattcctgctaaatttaaagttgttccagactttatttcaaatctttgccctattccaccatagttatctatttcccaaaatctagaacctcctataaagaaatattgatggtttctttctgttccctgagaatcaacaatattatctgcaaattcttttccatttccatagttataggaattaaaattatactctccagcaggaatattagcataaaatgcttgcttatacattttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacatcaggtgctactggtgaaaatgatggtatattaatattgggtgcacttggtgtatttggtactcctggtgtagcacttggtctaggttgaggaatatcaactggtggtacagataatgtaattgcacttttttgaatatttttaggtctaattcctgcacttacctctattgtcattggatcttcaggaactagtgccctatttaccaatccataattcaatccatttccatttggattaaatcctccatttgttgctattattgaagctaatgctgctttctggtcagctgttctagctgttgcagttcttccaaatacatttgtacttcttgtaaatatcccttcaaatggatatttttctgccttatctcctcttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttttgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctactggatttacttcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gggaggagaaagagaagtatatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatataaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaagtaaatccagtagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcaaaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaagaggagataaggcagaaaaatatccatttgaagggatatttacaagaagtacaaatgtatttggaagaactgcaacagctagaacagctgaccagaaagcagcattagcttcaataatagcaacaaatggaggatttaatccaaatggaaatggattgaattatggattggtaaatagggcactagttcctgaagatccaatgacaatagaggtaagtgcaggaattagacctaaaaatattcaaaaaagtgcaattacattatctgtaccaccagttgatattcctcaacctagaccaagtgctacaccaggagtaccaaatacaccaagtgcacccaatattaatataccatcattttcaccagtagcacctgatgtaaaagaaccacaattaccaccaccacctgtatataatttagtattaggtgcagattgtaatgaagactgtaatagttcaaattcaactccacgtcaaactacaaaagatggctggataggtagtccagaacaaaaagactcacaaaatgttaaattacttttacattatacttggccttataataaaggagcagaatcatcattggcatttaaaatgtataagcaagcattttatgctaatattcctgctggagagtataattttaattcctataactatggaaatggaaaagaatttgcagataatattgttgattctcagggaacagaaagaaaccatcaatatttctttataggaggttctagattttgggaaatagataactatggtggaatagggcaaagatttgaaataaagtctggaacaactttaaatttagcaggaattctaactttagcattagtttctcaggaaaatggtggaattttagcaaatgcaggaacaattacagatgttaaagaaaaagatgatcagtatataaaagaatttacagatagagaaattaatgggccatctggtaaaatgaatattaaaaaaagtaaagatggatatgtaggttataaagtaggattagcccaagtagaggaaaattcagatggtggtataagtgcaggtcatgttgaaccaaatagtcatcaatatcaagaattaattaatgaaggaacaattgattttcgtggaaataactctatgggaatatatgtttatcaaccgagaaatgtacaaaatacttatacttggtatagtacatatgcaaaagttattaatgcaattactggaaaaatttatcttagtgggaaagaaagttatggaatgaggattgctgctaaatctgaaggtcaagcagaaatgacgaacaaaggattgattgaattaagaaatagtccactttcaggaggaaaagataaagctgataaatctgttgctatgatt Mask Tandem Repeat Region ================================================ aatcatagcaacagatttatcagctttatcttttcctcctgaaagtggactatttcttaattcaatcaatcctttgttcgtcatttctgcttgaccttcagatttagcagcaatcctcattccataactttctttcccactaagataaatttttccagtaattgcattaataacttttgcatatgtactataccaagtataagtattttgtacatttctcggttgataaacatatattcccatagagttatttccacgaaaatcaattgttccttcattaattaattcttgatattgatgactatttggttcaacatgacctgcacttataccaccatctgaattttcctctacttgggctaatcctactttataacctacatatccatctttactttttttaatattcattttaccagatggcccattaatttctctatctgtaaattcttttatatactgatcatctttttctttaacatctgtaattgttcctgcatttgctaaaattccaccattttcctgagaaactaatgctaaagttagaattcctgctaaatttaaagttgttccagactttatttcaaatctttgccctattccaccatagttatctatttcccaaaatctagaacctcctataaagaaatattgatggtttctttctgttccctgagaatcaacaatattatctgcaaattcttttccatttccatagttataggaattaaaattatactctccagcaggaatattagcataaaatgcttgcttatacattttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacatcaggtgctactggtgaaaatgatggtatattaatattgggtgcacttggtgtatttggtactcctggtgtagcacttggtctaggttgaggaatatcaactggtggtacagataatgtaattgcacttttttgaatatttttaggtctaattcctgcacttacctctattgtcattggatcttcaggaactagtgccctatttaccaatccataattcaatccatttccatttggattaaatcctccatttgttgctattattgaagctaatgctgctttctggtcagctgttctagctgttgcagttcttccaaatacatttgtacttcttgtaaatatcccttcaaatggatatttttctgccttatctcctcttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttttgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctactggatttacttcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Find is-nt database================================================ Query_seq: FN2058:FN2059|FN2058:FN2059:Fusobacterium outer membrane protein family:Outer membrane protein:<-<-:571186..572966 1781 aatcatagcaacagatttatcagctttatcttttcctcctgaaagtggactatttcttaattcaatcaatcctttgttcgtcatttctgcttgaccttcagatttagcagcaatcctcattccataactttctttcccactaagataaatttttccagtaattgcattaataacttttgcatatgtactataccaagtataagtattttgtacatttctcggttgataaacatatattcccatagagttatttccacgaaaatcaattgttccttcattaattaattcttgatattgatgactatttggttcaacatgacctgcacttataccaccatctgaattttcctctacttgggctaatcctactttataacctacatatccatctttactttttttaatattcattttaccagatggcccattaatttctctatctgtaaattcttttatatactgatcatctttttctttaacatctgtaattgttcctgcatttgctaaaattccaccattttcctgagaaactaatgctaaagttagaattcctgctaaatttaaagttgttccagactttatttcaaatctttgccctattccaccatagttatctatttcccaaaatctagaacctcctataaagaaatattgatggtttctttctgttccctgagaatcaacaatattatctgcaaattcttttccatttccatagttataggaattaaaattatactctccagcaggaatattagcataaaatgcttgcttatacattttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacatcaggtgctactggtgaaaatgatggtatattaatattgggtgcacttggtgtatttggtactcctggtgtagcacttggtctaggttgaggaatatcaactggtggtacagataatgtaattgcacttttttgaatatttttaggtctaattcctgcacttacctctattgtcattggatcttcaggaactagtgccctatttaccaatccataattcaatccatttccatttggattaaatcctccatttgttgctattattgaagctaatgctgctttctggtcagctgttctagctgttgcagttcttccaaatacatttgtacttcttgtaaatatcccttcaaatggatatttttctgccttatctcctcttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttttgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctactggatttacttcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN2058:FN2059|FN2058:FN2059:Fusobacterium outer membrane protein family:Outer membrane protein:<-<-:571186..572966 1781 aatcatagcaacagatttatcagctttatcttttcctcctgaaagtggactatttcttaattcaatcaatcctttgttcgtcatttctgcttgaccttcagatttagcagcaatcctcattccataactttctttcccactaagataaatttttccagtaattgcattaataacttttgcatatgtactataccaagtataagtattttgtacatttctcggttgataaacatatattcccatagagttatttccacgaaaatcaattgttccttcattaattaattcttgatattgatgactatttggttcaacatgacctgcacttataccaccatctgaattttcctctacttgggctaatcctactttataacctacatatccatctttactttttttaatattcattttaccagatggcccattaatttctctatctgtaaattcttttatatactgatcatctttttctttaacatctgtaattgttcctgcatttgctaaaattccaccattttcctgagaaactaatgctaaagttagaattcctgctaaatttaaagttgttccagactttatttcaaatctttgccctattccaccatagttatctatttcccaaaatctagaacctcctataaagaaatattgatggtttctttctgttccctgagaatcaacaatattatctgcaaattcttttccatttccatagttataggaattaaaattatactctccagcaggaatattagcataaaatgcttgcttatacattttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacatcaggtgctactggtgaaaatgatggtatattaatattgggtgcacttggtgtatttggtactcctggtgtagcacttggtctaggttgaggaatatcaactggtggtacagataatgtaattgcacttttttgaatatttttaggtctaattcctgcacttacctctattgtcattggatcttcaggaactagtgccctatttaccaatccataattcaatccatttccatttggattaaatcctccatttgttgctattattgaagctaatgctgctttctggtcagctgttctagctgttgcagttcttccaaatacatttgtacttcttgtaaatatcccttcaaatggatatttttctgccttatctcctcttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttttgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctactggatttacttcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN2058:FN2059|FN2058:FN2059:Fusobacterium outer membrane protein family:Outer membrane protein:<-<-:571186..572966 1781 aatcatagcaacagatttatcagctttatcttttcctcctgaaagtggactatttcttaattcaatcaatcctttgttcgtcatttctgcttgaccttcagatttagcagcaatcctcattccataactttctttcccactaagataaatttttccagtaattgcattaataacttttgcatatgtactataccaagtataagtattttgtacatttctcggttgataaacatatattcccatagagttatttccacgaaaatcaattgttccttcattaattaattcttgatattgatgactatttggttcaacatgacctgcacttataccaccatctgaattttcctctacttgggctaatcctactttataacctacatatccatctttactttttttaatattcattttaccagatggcccattaatttctctatctgtaaattcttttatatactgatcatctttttctttaacatctgtaattgttcctgcatttgctaaaattccaccattttcctgagaaactaatgctaaagttagaattcctgctaaatttaaagttgttccagactttatttcaaatctttgccctattccaccatagttatctatttcccaaaatctagaacctcctataaagaaatattgatggtttctttctgttccctgagaatcaacaatattatctgcaaattcttttccatttccatagttataggaattaaaattatactctccagcaggaatattagcataaaatgcttgcttatacattttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacatcaggtgctactggtgaaaatgatggtatattaatattgggtgcacttggtgtatttggtactcctggtgtagcacttggtctaggttgaggaatatcaactggtggtacagataatgtaattgcacttttttgaatatttttaggtctaattcctgcacttacctctattgtcattggatcttcaggaactagtgccctatttaccaatccataattcaatccatttccatttggattaaatcctccatttgttgctattattgaagctaatgctgctttctggtcagctgttctagctgttgcagttcttccaaatacatttgtacttcttgtaaatatcccttcaaatggatatttttctgccttatctcctcttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttttgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctactggatttacttcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 5 Min: 1 Max: 1656 Len: 1656 Subject: UniRef90_Q7P365 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 1.0E-53 bit: 214.0 Len: 660 Query Start:997 Query End:1656 Subject Strand: null Subject Start: 1 Subject End: 217 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G V G A F S E E V N - - P V A N G V P T R E E I A T S R E N L R N S V G S L Q S K I D E A R A E N S K S L A G L R L E L I Q L M E Q G D Q V V K S P W M S W Q F G I N Y M Y S K W N G T Y K G R G D K A E K Y P F E G I F T R S T N V F G R T A T A R T A D Q K A - A L A S I I A T X X X X X X X X X X X X X G L V N R A L V P E D P M T I E V S A G I R P K N I Q K S A I T L S V P P V D I P Q P R P S A T P G V P N T P S A P N I N I P S F S P V A P D ............................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G G S A F S E E I N N E S T Q N T I P T R E Q I A S S K E N L K N S V G S L Q S K I D S A R T E N E K S L A G L K L E L I Q L M E Q G D Q V V K S P W M S W Q F G A N Y M Y S K W N G T Y K G K A D K A E K Y P F E G M F A R S T N L F E R V I S P L S E K Y K G L A T S T N P H S A S S N A R N G L G S G Y G L A S T A P R Q E P L V A I N I E A S I R P K D V T R S A V - - S A P T V G V G A P R L D T L - - - - N V P S S E P L S V T P P N P K A P E ............................................................................................................................. Subject: UniRef90_Q7P2K3 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 6.0E-52 bit: 208.0 Len: 777 Query Start:4 Query End:780 Subject Strand: null Subject Start: 1 Subject End: 250 ... M Y K Q A F Y A N I P A - - - - - G E Y N F N S Y N Y G N G K E F A D N I V D S Q G T E R N H Q Y F F I G G S R F W E I D N Y G G I G Q R F E I K S G T T L N L A G I L T L A L V S Q E N G G I L A N A G T I T D V K E K D D Q Y I K E F - - - - - - T D R E I N G P S G K M N I K K S K D G Y V G Y K V G L A Q V E E N S D G G I S A G H V E P N S H Q Y Q E L I N E - - G T I D F R G N N S M G I Y V Y Q P R N V Q N T Y T W Y S T Y A K V I N A I T G K I Y L S G K E S Y G M R I A A K S E G Q A E M - - T N K G L I E L R N S P L S G G K D K A D K S V A M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... M Y K E G D T T V L P A P P G G G N T Y Y F N S Y N F G G T K E F A N G V V N S Q G I N K N N Q Y F F I G G S R F W E I D N - - N S S G T Y E L P N G K K L N L G G I L T L G L V S Q E N G T E L K N S G T I T D E E E K D E K W I K E M P Y D A G K D Y L T I H G P T G D Y K V K R S G E G Y V G Y K V G I A Q V Q E N - - - - - - - G P T D Y D G N K - Q K M T N S S T G K I N F F G E R S I G M Y V Y L P G N - - - - - - - - T T Y A I M R N - - E G E I N L R G S E S Y G M K I A A K S A D R A E M V N T S T G K I T L G K N - - - - G K D S A S N S I A M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q4U0Z0 Cluster: Apoptosis inducing membrane protein; n=2; Fusobacterium nucleatum|Rep: Apoptosis inducing membrane protein - Fusobacterium nucleatum HSP 1 e-value: 1.0E-38 bit: 164.0 Len: 243 Query Start:1 Query End:243 Subject Strand: null Subject Start: 1 Subject End: 81 M G I Y V Y Q P R N V Q N T Y T W Y S T Y A K V I N A I T G K I Y L S G K E S Y G M R I A A K S E G Q A E M T N K G L I E L R N S P L S G G K D K A D K S V A M I .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G I Y V Y Q P R N V Q N T Y T W Y S T Y A K V I N A I T G K I Y L S G K E S Y G M R I A A K S E G Q A E M T N K G L I E L R N S P L S G G K D K A D K S V A M I .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q8RGN7 Cluster: Fusobacterium outer membrane protein family; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Fusobacterium outer membrane protein family - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 3.0E-16 bit: 89.7 Len: 429 Query Start:4 Query End:432 Subject Strand: null Subject Start: 12 Subject End: 136 ... I N G P S G K M N I K K S K D G Y V G Y K V G L A Q V E E N S D G G I S A G H V E P N S H Q Y Q E L I N E G T I D F R G N N S M G I Y V Y Q P R N V Q N T Y T W Y S T Y A K V I N A I T G K I Y L S G K E S Y G M R I A A K S E G Q A E M - - T N K G L I E L R N S P L S G G K D K A D K S V A M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ... I K G P T E D Y K V K R S G E G Y V G Y K V G I A Q V Q E N G P S Q F D - - - - - - G N K Q K M T N S S T G K I N F F G E R S I G M Y V Y L P G N - - - - - - - - T T H A I M R N - - E G E I N L R G S E S Y G M K I A A K S A D R A E M V N T S T G K I T L G K N - - - - G K D S A S N S I A M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7P2K8 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=2; Fusobacterium nucleatum|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 5.0E-11 bit: 72.4 Len: 495 Query Start:7 Query End:501 Subject Strand: null Subject Start: 25 Subject End: 196 ...... N A G T I T D V K E K D D Q Y I - - - - K E F T D R E I N G P - - - S G K M N I K K S K D - - - - - - - - - - G Y V G Y K V G L A Q V E E N S D G G I S A G H V E P N - S H Q Y Q E L I N E G T I D F R G N N S M G I Y V Y Q P R N V Q N T Y T W Y S T Y A K V I N A I - - - - T G K I Y L S G K E S Y G M R I A A K S E G Q A E M T N K G L I E L R N S P L S G G K D K A D K S V A ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...... N E G T L T D D K E K D L E E I G G L K K G D S D K L K R S P H L G G D E I N V A R T K D K V V N G Q V I K G G Y T G Y K I G M I L T Q E F D D - - - - - - - - - P N P G N N Y Y R L I N D G T I S F M G R N S I G I Q V Y A K P N N K - - - - - A S T I I D V I N K E N K N G A G E I T L G G I E S Y G L K L S S R I L R E A N - G R K S V F E N R G K I N I K G G D G S E N S L S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 2 End: 91 . M I A T D L S A L S F P P E S G L F L N S I N P L F V I S A .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 15 End: 104 .............. M Y Q L Y L F L L K V D Y F L I Q S I L C S S F L L D L Q I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 91 End: 282 .......................................................................................... M T F R F S S N P H S I T F F P T K I N F S S N C I N N F C I C T I P S I S I L Y I S R L I N I Y S H R V I S T K I N C ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 285 End: 401 ............................................................................................................................................................................................................................................................................................ M L D I D D Y L V Q H D L H L Y H H L N F P L L G L I L L Y N L H I H L Y F F .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 373 End: 504 .................................................................................................................................................................................................................................................................................................................................................................................... M T Y I S I F T F F N I H F T R W P I N F S I C K F F Y I L I I F F F N I C N C S C I C ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 489 End: 629 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F L H L L K F H H F P E K L M L K L E F L L N L K L F Q T L F Q I F A L F H H S Y L F P K I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 592 End: 792 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P Y S T I V I Y F P K S R T S Y K E I L M V S F C S L R I N N I I C K F F S I S I V I G I K I I L S S R N I S I K C L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 903 End: 1028 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M E L N L N Y Y S L H Y N L H L I L N Y I Q V V V V I V V L L H Q V L L V K M M V Y ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 51 Strand: + Start: 1256 End: 1408 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I E A N A A F W S A V L A V A V L P N T F V L L V N I P S N G Y F S A L S P L P L Y V P F H L L Y I ..................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 1279 End: 1428 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M V S C S S C C S S S K Y I C T S C K Y P F K W I F F C L I S S S F I C T I P F T V H I V Y S K L P ................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 1335 End: 1538 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L Q M D I F L P Y L L F L Y M Y H S I Y C T Y S L F Q I A M T S K V I L L L D P L V P L I V L I L I L S L L N F L S ................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1469 End: 1780 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M N C I N S N L K P A K L F E F S A L A S S I L D C K L P T E F L K F S L D V A I S S L V G T P F A T G F T S S E K A P . Protein_Len: 60 Strand: + Start: 1542 End: 1781 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A N F L L S F L N F L L M S L F L L L L V L H L L L D L L L Q K K L L L P S L R I I L L N L V N I L H F Y I F L L L N Protein_Len: 30 Strand: - Start: 1400 End: 1489 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q V Y L K N W I A M V D L T I K S S S G R T G N I T N I R M .................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 1269 End: 1409 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H Q K R T L Q E L Q Q L E E L Y M Q V E Q L Y G K L H I N K Q R I E E E K I H V M G N V T C M .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: - Start: 1008 End: 1157 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q H F H H Y I L I P H V Q H I Q Y E Q H L V Q D L N L F I L Q H Y L Y H L Q V K K F I K L D L E Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 642 End: 848 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. E R L I L L I I Q L N K E M E M T I P I L I I S E L L F I L M F H K S I C K L H W H H N Q E K I I L G L I I Y F Y N L M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: - Start: 120 End: 278 ....................................................................................................................... E M V K K G V L I F K E L L Q M L L K Q M H V I G L I L I K Y M E R N I F M Y E W L T I E V F I L Q E K M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1 End: 1761 T A I E E R T P V G N A V P N V E E S F A G V G M M L F L I A L G L S Y K V S K Y R K A I S R L T N E V K Y L N N N G M .................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 1737 End: 1766 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATAGATTATTATTTCCCATATACT............... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 288 End: 317 ...............................................................................................................................................................................................................................................................................................CTTGATATTGATGACTATTTGGTTCAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 84 Start: 1602 End: 1618 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTACTCCATTTGCT................................................................................................................................................................... PromScan Matrix: RpoN Strand: - Score: 82 Start: 109 End: 125 ............................................................................................................ATGGAATGAGGATTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 40 HP_score: -2.3 Tail_Score: -2.78264 Start: 989 End: 1020 Full_Region: GGTGGTAATTGTGGT TCTTTTACATCAG GTGCTA CTGGTGAAAATGA TGGTATATTAATATT ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTACATCAGGTGCTACTGGTGAAAATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 46 HP_score: -2.7 Tail_Score: -3.43676 Start: 1214 End: 1239 Full_Region: gcaacaaatggagga tttaatcca aatggaaa tggattgaa ttatggattggtaaa .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaatccaaatggaaatggattgaa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: FN2058:FN2059|FN2058:FN2059:Fusobacterium outer membrane protein family:Outer membrane protein:<-<-:571186..572966 1781 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Intra-Species Hit: Count: 3 Min: 781 Max: 1781 Len: 1001 Subject: NC_003454_FN2058_FN2059|Fusobacterium outer membrane protein family:Outer membrane protein|NEGATIVE:NEGATIVE|[571186,572966]|1781 HSP 1 e-value: 1.0E-118 bit: 428.0 Len: 216 Query Start:781 Query End:996 Subject Strand: POSITIVE Subject Start: 781 Subject End: 996 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaaatgccaatgatgattctgctcctttattataaggccaagtataatgtaaaagtaatttaacattttgtgagtctttttgttctggactacctatccagccatcttttgtagtttgacgtggagttgaatttgaactattacagtcttcattacaatctgcacctaatactaaattatatacaggtggtggtggtaattgtggttcttttac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 6.0E-64 bit: 248.0 Len: 125 Query Start:1657 Query End:1781 Subject Strand: POSITIVE Subject Start: 1657 Subject End: 1781 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Subject: NC_003454_FN2047_FN2048|Fusobacterium outer membrane protein family:Outer membrane protein|NEGATIVE:NEGATIVE|[556474,558890]|2417 HSP 1 e-value: 6.0E-64 bit: 248.0 Len: 125 Query Start:1657 Query End:1781 Subject Strand: POSITIVE Subject Start: 2293 Subject End: 2417 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatatacttctctttctcctccc Subject: NC_003454_FN0253_FN0254|Outer membrane protein:Fusobacterium outer membrane protein family|POSITIVE:POSITIVE|[875124,876416]|1293 HSP 1 e-value: 1.0E-49 bit: 200.0 Len: 105 Query Start:1657 Query End:1761 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 114 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttatatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccat.................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattaagaataatattgctaaacctagtgaatattttacacttttgtatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccat.................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAAAUGCCAAUGAUGAUUCUGCUCCUUUAUUAUAAGGCCAAGUAUAAUGUAAAAGUAAUUUAACAUUUUGUGAGUCUUUUUGUUCUGGACUACCUAUCCAGCCAUCUUUUGUAGUUUGACGUGGAGUUGAAUUUGAACUAUUACAGUCUUCAUUACAAUCUGCACCUAAUACUAAAUUAUAUACAGGUGGUGGUGGUAAUUGUGGUUCUUUUACAUCAGGUGCUACUGGUGAAAAUGAUGGUAUAUUAAUAUUGGGUGCACUUGGUGUAUUUGGUACUCCUGGUGUAGCACUUGGUCUAGGUUGAGGAAUAUCAACUGGUGGUACAGAUAAUGUAAUUGCACUUUUUUGAAUAUUUUUAGGUCUAAUUCCUGCACUUACCUCUAUUGUCAUUGGAUCUUCAGGAACUAGUGCCCUAUUUACCAAUCCAUAAUUCAAUCCAUUUCCAUUUGGAUUAAAUCCUCCAUUUGUUGCUAUUAUUGAAGCUAAUGCUGCUUUCUGGUCAGCUGUUCUAGCUGUUGCAGUUCUUCCAAAUACAUUUGUACUUCUUGUAAAUAUCCCUUCAAAUGGAUAUUUUUCUGCCUUAUCUCCUCUUCCUUUAUAUGUACCAUUCCAUUUACUGUACAUAUAGUUUAUUCCAAAUUGCCAUGACAUCCAAGGUGAUUUUACUACUUGAUCCCCUUGUUCCAUUAAUUGUAUUAAUUCUAAUCUUAAGCCUGCUAAACUUUUUGAGUUUUCUGCUCUUGCUUCGUCUAUCUUAGAUUGCAAACUUCCUACUGAGUUUCUUAAAUUUUCUCUUGAUGUCGCUAUUUCUUCUCUUGUUGGUACUCCAUUUGCUACUGGAUUUACUUCUUCAGAAAAAGCUCCUACUCCCAUCAUUAAGAAUAAUAUUGCUAAACCUAGUGAAUAUUUUACACUUUUAUAUCUUUUUGCUAUUGAACGUAAAGUGUUUUCUACUUUAUAUAGAUUAUUAUUUCCCAUAUACUUCUCUUUCUCCUCCC ..........(((((((....((((((((......))))...)))).(((((.(((....))).)))))....(((.(((((...((((((......((((((.........(((((..(((((.(((..((((((((...(((.((((........(((((((............(((((.((((((.((((((.(((((((.(((........((((((......))))))....(((.((.(((((.(((..(((((((...(((((((((((.(((.(..(.((((((.(((((...((((((......))))))((((((((((((...((((..((((((((((((........(((((((((..(................)..))))))))))))))))..))))).....)))).............((((((........)))))).........))))).)))))))......)))))))))))...)..).((((((...))))))....)))....))))))))))))))))))..))).))))).)).)))...(((((...........))))).........((((((((((.............))))))))))......))))))))))........(((((.((((.........)))).)))))..)))))).)))))))))))........((((..((.((((((...))))))...))....)))).........)))))))..........)))))))...))))))))...))).))))))))))............(((....))).......)))))).......)))))))))))))).......)))))))..((((((((...(((.....((((((((((((((..(((.(((.(.....).))).))).)))))))))))...))).....)))..))))))))......................... (-207.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGGAGGAGAAAGAGAAGUAUAUGGGAAAUAAUAAUCUAUAUAAAGUAGAAAACACUUUACGUUCAAUAGCAAAAAGAUAUAAAAGUGUAAAAUAUUCACUAGGUUUAGCAAUAUUAUUCUUAAUGAUGGGAGUAGGAGCUUUUUCUGAAGAAGUAAAUCCAGUAGCAAAUGGAGUACCAACAAGAGAAGAAAUAGCGACAUCAAGAGAAAAUUUAAGAAACUCAGUAGGAAGUUUGCAAUCUAAGAUAGACGAAGCAAGAGCAGAAAACUCAAAAAGUUUAGCAGGCUUAAGAUUAGAAUUAAUACAAUUAAUGGAACAAGGGGAUCAAGUAGUAAAAUCACCUUGGAUGUCAUGGCAAUUUGGAAUAAACUAUAUGUACAGUAAAUGGAAUGGUACAUAUAAAGGAAGAGGAGAUAAGGCAGAAAAAUAUCCAUUUGAAGGGAUAUUUACAAGAAGUACAAAUGUAUUUGGAAGAACUGCAACAGCUAGAACAGCUGACCAGAAAGCAGCAUUAGCUUCAAUAAUAGCAACAAAUGGAGGAUUUAAUCCAAAUGGAAAUGGAUUGAAUUAUGGAUUGGUAAAUAGGGCACUAGUUCCUGAAGAUCCAAUGACAAUAGAGGUAAGUGCAGGAAUUAGACCUAAAAAUAUUCAAAAAAGUGCAAUUACAUUAUCUGUACCACCAGUUGAUAUUCCUCAACCUAGACCAAGUGCUACACCAGGAGUACCAAAUACACCAAGUGCACCCAAUAUUAAUAUACCAUCAUUUUCACCAGUAGCACCUGAUGUAAAAGAACCACAAUUACCACCACCACCUGUAUAUAAUUUAGUAUUAGGUGCAGAUUGUAAUGAAGACUGUAAUAGUUCAAAUUCAACUCCACGUCAAACUACAAAAGAUGGCUGGAUAGGUAGUCCAGAACAAAAAGACUCACAAAAUGUUAAAUUACUUUUACAUUAUACUUGGCCUUAUAAUAAAGGAGCAGAAUCAUCAUUGGCAUUUAAA .((((..(((...(((.(((.((((.........(((((.....)))))...(((((...((......))..............(((((...(((((.((.(((.(((((.(((((....))))).(((...((((.((((((((((..........(((((..((...(((....))).................((((((..................((.(((...((((((((.................((....))...(((((.....))))).))))))))...)))))....................(((((.(((...........))).)))))))))))...))...)))))......(((((((((.((.......)).))))))))).................((((..((((((((........)))))))).....((((((....)))))).......))))..(((((.....)))))..))))))).)))....(((........)))........(((((.((((((((........))))))))..(((.(((((((...((((...((((((((((.....((............))......)))))))))).))))...............(((((...........))))).))))))).))).)))))..))))..)))..))))).)))))))))).....))))).)))))..)))).................((((((.((((.((((((((((..(((.....(((...............)))......)))..))))))))))..))))...)))))).....))).)))...)))..))))..(((((..............((((((.....))))))........((.((....(((((.(((.....))))))))........((((......))))....)).))....)))))....... (-212.66) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 396 297 251 169 126 NC_003454:FN1426|5end_Serine_protease_2095462..2095692_NEGATIVE 380 510 461 157 99 NC_003454:FN0295|5end_Transketolase_927986..928216_POSITIVE 354 859 811 80 26 NC_003454:FN1616|5end_transcription_antitermination_protein_NusB_126437..126667_NEGATIVE 345 503 462 211 168 NC_003454:FN1598|5end_hypothetical_protein_108152..108382_NEGATIVE 335 529 490 54 5 NC_003454:FN0083|5end_Ethanolamine_utilization_protein_eutM_precursor_721180..721410_POSITIVE 324 530 482 167 118 NC_003454:FN1627|5end_SSU_ribosomal_protein_S5P_133556..133786_NEGATIVE 321 523 481 53 15 NC_003454:FN1192|5end_hypothetical_protein_1854679..1854909_POSITIVE 300 519 471 70 19 NC_003454:FN0007|5end_glucose-inhibited_division_protein_A_645938..646168_POSITIVE 298 878 836 93 39 NC_003454:FN1560|5end_hypothetical_protein_82982..83212_NEGATIVE 296 776 733 63 18 NC_003454:FN0655|5end_hypothetical_protein_1313372..1313602_POSITIVE 292 509 465 203 154 NC_003454:FN1637|5end_LSU_ribosomal_protein_L29P_137070..137300_NEGATIVE 291 424 382 204 153 NC_003454:FN0890|5end_Thiamin_pyrophosphokinase_1552087..1552317_NEGATIVE 290 529 484 193 148 NC_003454:FN1577|5end_Rod_shape-determining_protein_mreB_88405..88635_NEGATIVE 289 756 716 194 157 NC_003454:FN1506|5end_5-amino-6-(5-phosphoribosylamino)uracil_reductase_10871..11101_POSITIVE 288 498 451 163 98 NC_003454:FN0290|5end_Hemolysin_918997..919227_NEGATIVE 283 998 958 109 68 NC_003454:FN0754|5end_Glutamyl-tRNA(Gln)_amidotransferase_subunit_A_1414646..1414876_NEGATIVE 283 787 742 174 133 NC_003454:FN1867|5end_Zn-dependent_alcohol_dehydrogenase_and_related_dehydrogenase_359597..359827_NEGATIVE 282 878 831 209 142 NC_003454:FN1226|5end_uracil-DNA_glycosylase_1885503..1885733_NEGATIVE 282 510 461 144 96 NC_003454:FN0025|5end_Hypothetical_exported_24-amino_acid_repeat_protein_663746..663976_POSITIVE 279 526 494 77 45 NC_003454:FN1143|5end_glucosamine-6-phosphate_deaminase_1792461..1792691_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 747 1000 951 89 40 NC_003454:FN2048|3end_Outer_membrane_protein_558801..558951_NEGATIVE 722 980 931 80 31 NC_003454:FN0253|3end_Outer_membrane_protein_875063..875213_POSITIVE 380 510 461 132 74 NC_003454:FN0294|3end_Transketolase_subunit_A_928041..928191_POSITIVE 354 859 811 75 21 NC_003454:FN1617|3end_Prolipoprotein_diacylglyceryltransferase_126442..126592_NEGATIVE 345 503 462 86 43 NC_003454:FN1599|3end_hypothetical_protein_108277..108427_NEGATIVE 324 530 482 143 94 NC_003454:FN1628|3end_LSU_ribosomal_protein_L18P_133580..133730_NEGATIVE 283 998 958 92 51 NC_003454:FN0755|3end_Glutamyl-tRNA(Gln)_amidotransferase_subunit_C_1414663..1414813_NEGATIVE 282 510 461 135 87 NC_003454:FN0024|3end_Hypothetical_exported_24-amino_acid_repeat_protein_663817..663967_POSITIVE 279 526 494 59 27 NC_003454:FN1142|3end_Oxygen-independent_coproporphyrinogen_III_oxidase_1792523..1792673_POSITIVE 278 530 490 138 99 NC_003454:FN1280|3end_Endonuclease_1940261..1940411_POSITIVE 274 532 493 47 8 NC_003454:FN2127|3end_hypothetical_protein_638226..638376_NEGATIVE 272 839 793 71 25 NC_003454:FN0953|3end_hypothetical_protein_1609515..1609665_NEGATIVE 268 1000 953 91 34 NC_003454:FN0208|3end_(R)-2-hydroxyglutaryl-CoA_dehydratase_beta-subunit_836196..836346_POSITIVE 266 778 733 53 12 NC_003454:FN1482|3end_Guanosine-3',5'-bis(Diphosphate)_3'-pyrophosphohydrolase_2163815..2163965_NEGATIVE 265 759 715 149 105 NC_003454:FN0049|3end_hypothetical_protein_686919..687069_POSITIVE 264 846 809 97 60 NC_003454:FN0756|3end_Ribosomal_large_subunit_pseudouridine_synthase_B_1414962..1415112_NEGATIVE 264 898 856 72 15 NC_003454:FN1561|3end_Hypothetical_cytosolic_protein_83032..83182_NEGATIVE 263 526 485 61 17 NC_003454:FN1608|3end_Ribosomal_protein_L11_methyltransferase_117909..118059_NEGATIVE 260 880 836 62 18 NC_003454:FN0708|3end_Hypothetical_cytosolic_protein_1367425..1367575_POSITIVE 259 549 505 71 29 NC_003454:FN1126|3end_Acetyltransferase_1769820..1769970_NEGATIVE