Origin IGS: ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acattttctccttaaaattgtgatagtaaaataataattttaaagtatctatatgatatactataaaaaaattaaatacaataaaaaataaatatttttaaatgtattagtaatttagagggaggaaaagatatggaatatatactagttagaacagatgctgaagatataaatagtttacaaattaaacaagtaattactcttgatgaagtacaaaatgcaatgaatttaatgagtgtagattcattttacaatgaaaaaaagatttcaatttcaatttgttcagaaacttaccttgactgtatagccatatcatttagagatattacttcaccttatcgatatctcaacttactttctgggatattaaattgtaaagttattgatattcaagcaaataattttcttggtaaagaaaaatcaccttcttttaacaataaaatgaaaaatataactttctcagattttgtttatgaaaagaaaaataaactttcagaagtatatatccgtatgtttattgataatatacttggtgatatggaaatgataaaaaatctagtagcttctcattttactggaaatttaatttcatatgaaattttggatgacaattcttttattttttcattagaaatgagtgaatgtagtgaaagtttacttttactagaaattgaaaaaaacagaaaatatagaaataattttagaattacaatttcttgtaatgataataacttagcttttttaggcccaggttattatgcaacagttgtagaagaaggaagatttttggctaaaattttaaaaggaaaattttctatttcacctaatgagttaccatatttagaaaagccagaatatgatttcaattggttagtatcttattatgataaacttttacaacaacatttatatgatattaattgtgagtttaaaaacggaaaacaagcatatttttgttggagtgaagaaatgtatcagcctttacctgttccatcaacagtaataactcccttaggaagatattctatactaaaacttgaacttgaaatgcaacaaaatggatttgaaagtatgagaaatagattttttatatttaatcactttataaaaacagctgatgatagaatgagagcagctttatattttttacaatgttattctatgtttcagccttctgaacggagtgagcaggataaaatgtataatgaaatatctattacttacctagaagaggccttaaaatcagattcgacacttcattttccaaaagaagaatatttagaattatgccaacttgatagaaaagcacctttagatgtatcgcaaacaaaagtttttggaaaagacatttttattggttatcatcgtcatataatttgttatagttttggaaataatttaaaagactttcctatatttggtgattatttaatagaagagatagtggagggtgaaaaaattctttttactaattgttatgatccaggagttggaattattgtaaaaatcgaatacaatgagaaaaatgctgttcataatcctgcttggtttgaaaattgttttggtgagattaaatctatagatattggagcaaatggtgtatgtagatatgcttttatgggaatggttttagatagagcaggacaaaaaatgttttactatcatgctgaagtattaattggtaatgaacgttatacttttgaattttattatgcagatagggtacaagctcaacaaataaactttatgcttggaaatattaaagctgttttaccaaaagttgaagttgttaatgaagaagtaaaatctaattttatacataatatatttaagaaatttaagaaaatttctgataaattaggtataagaaaaaaagatttatcacttaataaaattagaaaatttattggaagtaatgaaaagtctgaaacattaacaattaatgag Mask Tandem Repeat Region ================================================ ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Find is-nt database================================================ Query_seq: FN1795:FN1796|FN1795:FN1796:hypothetical protein:hypothetical protein:<-->:276669..278615 1947 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1795:FN1796|FN1795:FN1796:hypothetical protein:hypothetical protein:<-->:276669..278615 1947 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1795:FN1796|FN1795:FN1796:hypothetical protein:hypothetical protein:<-->:276669..278615 1947 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 8 End: 214 ....... M V N V S D F S L L P I N F L I L L S D K S F F L I P N L S E I F L N F L N I L C I K L D F T S S L T T S T F G K T A L ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 231 End: 329 ...................................................................................................................................................................................................................................... M H N K I Q K Y N V H Y Q L I L Q H D S K T F F V L L Y L K P F P .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: + Start: 296 End: 412 ....................................................................................................................................................................................................................................................................................................... M F C P A L S K T I P I K A Y L H T P F A P I S I D L I S P K Q F S N Q A G L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 337 End: 516 ................................................................................................................................................................................................................................................................................................................................................ M S T Y T I C S N I Y R F N L T K T I F K P S R I M N S I F L I V F D F Y N N S N S W I I T I S K K N F F T L H Y L F Y ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 593 End: 688 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K M S F P K T F V C D T S K G A F L S S W H N S K Y S S F G K ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 618 End: 728 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F A I H L K V L F Y Q V G I I L N I L L L E N E V S N L I L R P L L G K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 826 End: 915 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I S C F Y K V I K Y K K S I S H T F K S I L L H F K F K F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 857 End: 970 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K N L F L I L S N P F C C I S S S S F S I E Y L P K G V I T V D G T G K G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 927 End: 1016 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M F L R E L L L L M E Q V K A D T F L H S N K N M L V F R F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 1082 End: 1189 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K S Y S G F S K Y G N S L G E I E N F P F K I L A K N L P S S T T V A ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 1235 End: 1378 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M V I L K L F L Y F L F F S I S S K S K L S L H S L I S N E K I K E L S S K I S Y E I K F P V K ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 1632 End: 1748 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I W L Y S Q G K F L N K L K L K S F F H C K M N L H S L N S L H F V L H Q E ....................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 1715 End: 1873 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K F I A F C T S S R V I T C L I C K L F I S S A S V L T S I Y S I S F P P S K L L I H L K I F I F Y C I .......................................................................... Protein_Len: 40 Strand: - Start: 948 End: 1067 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q Q H F L Y L S I C K K V G V F I H K N E T K L S V I L I M Y I N N Y F N I M M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 1 End: 1860 I K K E N Y F S D V S M L N M A N Q V E D L T I V Q K I Q L S N I D E A D T R V L I Y E M D K G G E L N S I C K F I N M ....................................................................................... ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 583 End: 612 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAAAGACATTTTTATTGGTTATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 1249 End: 1278 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAAAAACAGAAAATATAGAAATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 1350 End: 1379 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATATGAAATTAAATTTCCAGTAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 430 End: 459 .............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTATTGTAAAAATCGAATACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 25 End: 54 ........................CTTTTCATTACTTCCAATAAATTTTCTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 1693 End: 1722 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAATGAATCTACACTCATTAAATT................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 1866 End: 1895 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATTTAATTTTTTTATAGTATATCAT.................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 42 HP_score: -2.5 Tail_Score: -3.00003 Start: 479 End: 497 Full_Region: aagagatagtggagg gtgaaaa aattc tttttac taattgttatgatcc ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgaaaaaattctttttac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: FN1795:FN1796|FN1795:FN1796:hypothetical protein:hypothetical protein:<-->:276669..278615 1947 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatacatttaaaaatatttattttttattgtatttaatttttttatagtatatcatatagatactttaaaattattattttactatcacaattttaaggagaaaatgt Intra-Species Hit: Count: 1 Min: 1 Max: 1844 Len: 1844 Subject: NC_003454_FN1795_FN1796|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[276669,278615]|1947 HSP 1 e-value: 0.0 bit: 3531.0 Len: 1844 Query Start:1 Query End:1844 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1844 ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatcnnnnnnncttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgnnnnnnncaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatcnnnnnnncattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatac....................................................................................................... ctcattaattgttaatgtttcagacttttcattacttccaataaattttctaattttattaagtgataaatctttttttcttatacctaatttatcagaaattttcttaaatttcttaaatatattatgtataaaattagattttacttcttcattaacaacttcaacttttggtaaaacagctttaatatttccaagcataaagtttatttgttgagcttgtaccctatctgcataataaaattcaaaagtataacgttcattaccaattaatacttcagcatgatagtaaaacattttttgtcctgctctatctaaaaccattcccataaaagcatatctacatacaccatttgctccaatatctatagatttaatctcaccaaaacaattttcaaaccaagcaggattatgaacagcatttttctcattgtattcgatttttacaataattccaactcctggatcataacaattagtaaaaagaattttttcaccctccactatctcttctattaaataatcaccaaatataggaaagtcttttaaattatttccaaaactataacaaattatatgacgatgataaccaataaaaatgtcttttccaaaaacttttgtttgcgatacatctaaaggtgcttttctatcaagttggcataattctaaatattcttcttttggaaaatgaagtgtcgaatctgattttaaggcctcttctaggtaagtaatagatatttcattatacattttatcctgctcactccgttcagaaggctgaaacatagaataacattgtaaaaaatataaagctgctctcattctatcatcagctgtttttataaagtgattaaatataaaaaatctatttctcatactttcaaatccattttgttgcatttcaagttcaagttttagtatagaatatcttcctaagggagttattactgttgatggaacaggtaaaggctgatacatttcttcactccaacaaaaatatgcttgttttccgtttttaaactcacaattaatatcatataaatgttgttgtaaaagtttatcataataagatactaaccaattgaaatcatattctggcttttctaaatatggtaactcattaggtgaaatagaaaattttccttttaaaattttagccaaaaatcttccttcttctacaactgttgcataataacctgggcctaaaaaagctaagttattatcattacaagaaattgtaattctaaaattatttctatattttctgtttttttcaatttctagtaaaagtaaactttcactacattcactcatttctaatgaaaaaataaaagaattgtcatccaaaatttcatatgaaattaaatttccagtaaaatgagaagctactagattttttatcatttccatatcaccaagtatattatcaataaacatacggatatatacttctgaaagtttatttttcttttcataaacaaaatctgagaaagttatatttttcattttattgttaaaagaaggtgatttttctttaccaagaaaattatttgcttgaatatcaataactttacaatttaatatcccagaaagtaagttgagatatcgataaggtgaagtaatatctctaaatgatatggctatacagtcaaggtaagtttctgaacaaattgaaattgaaatctttttttcattgtaaaatgaatctacactcattaaattcattgcattttgtacttcatcaagagtaattacttgtttaatttgtaaactatttatatcttcagcatctgttctaactagtatatattccatatcttttcctccctctaaattactaatac....................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUCAUUAAUUGUUAAUGUUUCAGACUUUUCAUUACUUCCAAUAAAUUUUCUAAUUUUAUUAAGUGAUAAAUCUUUUUUUCUUAUACCUAAUUUAUCAGAAAUUUUCUUAAAUUUCUUAAAUAUAUUAUGUAUAAAAUUAGAUUUUACUUCUUCAUUAACAACUUCAACUUUUGGUAAAACAGCUUUAAUAUUUCCAAGCAUAAAGUUUAUUUGUUGAGCUUGUACCCUAUCUGCAUAAUAAAAUUCAAAAGUAUAACGUUCAUUACCAAUUAAUACUUCAGCAUGAUAGUAAAACAUUUUUUGUCCUGCUCUAUCUAAAACCAUUCCCAUAAAAGCAUAUCUACAUACACCAUUUGCUCCAAUAUCUAUAGAUUUAAUCUCACCAAAACAAUUUUCAAACCAAGCAGGAUUAUGAACAGCAUUUUUCUCAUUGUAUUCGAUUUUUACAAUAAUUCCAACUCCUGGAUCAUAACAAUUAGUAAAAAGAAUUUUUUCACCCUCCACUAUCUCUUCUAUUAAAUAAUCACCAAAUAUAGGAAAGUCUUUUAAAUUAUUUCCAAAACUAUAACAAAUUAUAUGACGAUGAUAACCAAUAAAAAUGUCUUUUCCAAAAACUUUUGUUUGCGAUACAUCUAAAGGUGCUUUUCUAUCAAGUUGGCAUAAUUCUAAAUAUUCUUCUUUUGGAAAAUGAAGUGUCGAAUCUGAUUUUAAGGCCUCUUCUAGGUAAGUAAUAGAUAUUUCAUUAUACAUUUUAUCCUGCUCACUCCGUUCAGAAGGCUGAAACAUAGAAUAACAUUGUAAAAAAUAUAAAGCUGCUCUCAUUCUAUCAUCAGCUGUUUUUAUAAAGUGAUUAAAUAUAAAAAAUCUAUUUCUCAUACUUUCAAAUCCAUUUUGUUGCAUUUCAAGUUCAAGUUUUAGUAUAGAAUAUCUUCCUAAGGGAGUUAUUACUGUUGAUGGAACAGGUAAAGGCUGAUACAUUUCUUCACUCCAACAAAAAUAUGCUUGUUUUCCGUUUUUAAACUCACAAUUAAUAUCAUAUAAAUGUUGUUGUAAAAGUUUAUCAUAAUAAGAUACUAACCAAUUGAAAUCAUAUUCUGGCUUUUCUAAAUAUGGUAACUCAUUAGGUGAAAUAGAAAAUUUUCCUUUUAAAAUUUUAGCCAAAAAUCUUCCUUCUUCUACAACUGUUGCAUAAUAACCUGGGCCUAAAAAAGCUAAGUUAUUAUCAUUACAAGAAAUUGUAAUUCUAAAAUUAUUUCUAUAUUUUCUGUUUUUUUCAAUUUCUAGUAAAAGUAAACUUUCACUACAUUCACUCAUUUCUAAUGAAAAAAUAAAAGAAUUGUCAUCCAAAAUUUCAUAUGAAAUUAAAUUUCCAGUAAAAUGAGAAGCUACUAGAUUUUUUAUCAUUUCCAUAUCACCAAGUAUAUUAUCAAUAAACAUACGGAUAUAUACUUCUGAAAGUUUAUUUUUCUUUUCAUAAACAAAAUCUGAGAAAGUUAUAUUUUUCAUUUUAUUGUUAAAAGAAGGUGAUUUUUCUUUACCAAGAAAAUUAUUUGCUUGAAUAUCAAUAACUUUACAAUUUAAUAUCCCAGAAAGUAAGUUGAGAUAUCGAUAAGGUGAAGUAAUAUCUCUAAAUGAUAUGGCUAUACAGUCAAGGUAAGUUUCUGAACAAAUUGAAAUUGAAAUCUUUUUUUCAUUGUAAAAUGAAUCUACACUCAUUAAAUUCAUUGCAUUUUGUACUUCAUCAAGAGUAAUUACUUGUUUAAUUUGUAAACUAUUUAUAUCUUCAGCAUCUGUUCUAACUAGUAUAUAUUCCAUAUCUUUUCCUCCCUCUAAAUUACUAAUAC ........(((((((((....(((......(((((((..((((((.........)))))))))))))((((((..(((...(((((.((((.(((.((((((((....))))))))...))).)))).))))))))..))))))....))).))))))))).........(((((((.................((((((..(((((((.....)))))))...((((.(((..((((((((((..(((((((((((.(((...............(((((.(((((((.....(((.....((((((((.......................((((.................)))).....(((....))).............................)))))))).)))...(((....((((((((.((((.((..((((................(((((.((((.............(((....))).............((((.((((........((((.((.((((((((((.........(((((......((((((((.((((((((.(.((((......(((((((((((((.((...(((((.....(((((((.(((((((((.(((((...((((..(((((((..(((((((.........)))))))......)))))))...))))...))))).)))).))))).((.(((((((.(((.((....((((((((.(((..(.....)..)))..((((((...(((((((......(((.............)))....)))))))..))))))......)))))))).......)).))).))))))).))...................)))))))....)))))...((((((..((((((((.(((((...))))).)))).))))...)))))).)).))))))...................(((((........)))))....)))))))........)))).).))))))))...))))))))...(((((((.......))))..))).....)))))........)))))))))).)).))))...((((((((.((((((((((((...........((((((((...............................((((((((...(((........)))..)))))))).(((((((....))))))).))))))))........))))))))))))..........((((.((((....)))).))))............))))))))...)))).)))).)))).)))))..(((((....)))))))))..)).)))).)))))))))))..........)))))))............((((((((.(((..((....))..)))))))))))))))).((((((..........)))))).........))).))))))))))).))))))))))....)))))).)..(((((((....))))))).....))))))..........(((((((...(..(((((.(((........))).)))))..)....))))))).............(((((((.((((((((..(((..((...((((((((((((((..(((((......)))))..(((.(((((........)))))......(((((.(((((........)))))))))))))...))))))))))...............))))...))..))).))).)))))....)))))))................)))))))... (-310.29) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUAUUAGUAAUUUAGAGGGAGGAAAAGAUAUGGAAUAUAUACUAGUUAGAACAGAUGCUGAAGAUAUAAAUAGUUUACAAAUUAAACAAGUAAUUACUCUUGAUGAAGUACAAAAUGCAAUGAAUUUAAUGAGUGUAGAUUCAUUUUACAAUGAAAAAAAGAUUUCAAUUUCAAUUUGUUCAGAAACUUACCUUGACUGUAUAGCCAUAUCAUUUAGAGAUAUUACUUCACCUUAUCGAUAUCUCAACUUACUUUCUGGGAUAUUAAAUUGUAAAGUUAUUGAUAUUCAAGCAAAUAAUUUUCUUGGUAAAGAAAAAUCACCUUCUUUUAACAAUAAAAUGAAAAAUAUAACUUUCUCAGAUUUUGUUUAUGAAAAGAAAAAUAAACUUUCAGAAGUAUAUAUCCGUAUGUUUAUUGAUAAUAUACUUGGUGAUAUGGAAAUGAUAAAAAAUCUAGUAGCUUCUCAUUUUACUGGAAAUUUAAUUUCAUAUGAAAUUUUGGAUGACAAUUCUUUUAUUUUUUCAUUAGAAAUGAGUGAAUGUAGUGAAAGUUUACUUUUACUAGAAAUUGAAAAAAACAGAAAAUAUAGAAAUAAUUUUAGAAUUACAAUUUCUUGUAAUGAUAAUAACUUAGCUUUUUUAGGCCCAGGUUAUUAUGCAACAGUUGUAGAAGAAGGAAGAUUUUUGGCUAAAAUUUUAAAAGGAAAAUUUUCUAUUUCACCUAAUGAGUUACCAUAUUUAGAAAAGCCAGAAUAUGAUUUCAAUUGGUUAGUAUCUUAUUAUGAUAAACUUUUACAACAACAUUUAUAUGAUAUUAAUUGUGAGUUUAAAAACGGAAAACAAGCAUAUUUUUGUUGGAGUGAAGAAAUGUAUCAGCCUUUACCUGUUCCAUCAACAGUAAUAACUCCCUUAGGAAGAUAUUCUAUACUAAAACUUGAACUUGAAAUGCAACAAAAUGGAUUUGAAAGUAUGAGAAAUAGAUUUUUUAUAUUUAAUCACUUUAUAAAAACAGCUGAUGAUAGAAUGAGAGCAGCUUUAUAUUUUUUACAAUGUUAUUCUAUGUUUCAGCCUUCUGAACGGAGUGAGCAGGAUAAAAUGUAUAAUGAAAUAUCUAUUACUUACCUAGAAGAGGCCUUAAAAUCAGAUUCGACACUUCAUUUUCCAAAAGAAGAAUAUUUAGAAUUAUGCCAACUUGAUAGAAAAGCACCUUUAGAUGUAUCGCAAACAAAAGUUUUUGGAAAAGACAUUUUUAUUGGUUAUCAUCGUCAUAUAAUUUGUUAUAGUUUUGGAAAUAAUUUAAAAGACUUUCCUAUAUUUGGUGAUUAUUUAAUAGAAGAGAUAGUGGAGGGUGAAAAAAUUCUUUUUACUAAUUGUUAUGAUCCAGGAGUUGGAAUUAUUGUAAAAAUCGAAUACAAUGAGAAAAAUGCUGUUCAUAAUCCUGCUUGGUUUGAAAAUUGUUUUGGUGAGAUUAAAUCUAUAGAUAUUGGAGCAAAUGGUGUAUGUAGAUAUGCUUUUAUGGGAAUGGUUUUAGAUAGAGCAGGACAAAAAAUGUUUUACUAUCAUGCUGAAGUAUUAAUUGGUAAUGAACGUUAUACUUUUGAAUUUUAUUAUGCAGAUAGGGUACAAGCUCAACAAAUAAACUUUAUGCUUGGAAAUAUUAAAGCUGUUUUACCAAAAGUUGAAGUUGUUAAUGAAGAAGUAAAAUCUAAUUUUAUACAUAAUAUAUUUAAGAAAUUUAAGAAAAUUUCUGAUAAAUUAGGUAUAAGAAAAAAAGAUUUAUCACUUAAUAAAAUUAGAAAAUUUAUUGGAAGUAAUGAAAAGUCUGAAACAUUAACAAUUAAUGAG ...((((((.((((((((((((....(((((((....(((((.(((((((((((((..(((((....((((((((((((.((((((((((........)))).....(((.....)))......))))))...)))))))).)))).....(((((......))))).)))))))))))))............)))))))))).))))))).....((((((((.............))))))))..))).))))))))).))))))......(((((((((((..............(((((((....)))))))((((((.((((((...((((((((((((........))))....))))))))....))))))...............(((((((((((.(((....))).))).))))))))))))))................))).))))))))((((((....(((...(((((((((....................((((.(((((((((.....))))))))).)))).(((((((((....)))))))))))))))))).(((((((..(((((........(((((((.((((((((((.(((((..((((((((((.((((....))))..))))))))))......((((((((((..(((((((((((.................))))))))))).....(((...((((....(((((((.(......).)))))))..))))...)))...((((.......))))..)))))))))).....))))).))....)))))))).)))))))........((((((((..(((((((.((((.(((...(((((..(((((((.((((.....))))))))..........)))..)))))))).))))....((((.((((....((((.......(((((..(((((((((.........((((((((...........))))))))(((((((((.((((((..(((((((.....(((((((.((.(((.((((.........((((((((....((((((...(((((..((.....))....))))).))))))...))))..))))..........(((((.(.(((((.(((((((((((..(((((((((((....(((...((....))....)))..))))))))).))...........)))))))))))....((((((((((..(((((((...(((((....))))).....(((((.............)))))......)))))))...))))))))))..((((..(..((((((((.....))))))))..)..))))......)))))).)))))............))))))).)).))))))))))))))....((((((((.((((((((.(..((((.((((((.((.(((((((.((((((.......)))))).))))))).)).)))))).))))..))))))))).))))))))........)))))).))))).))))......................)))))))))..))))).....))))....)))).))))..))))))).......))))))))...)))))....))))))).)))........(((((((((((...((((.((((((..((((((((.((((.((((..((((((((....)))))))))))).)))).)))))))).....))))))...)))).......(((((...(((((((....)))))))...)))))..))))))))))))))))) (-388.19) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 673 50 1 141 92 NC_003454:FN1795|5end_hypothetical_protein_276578..276808_NEGATIVE 336 330 283 213 161 NC_003454:FN0985|5end_Phosphoribosylglycinamide_formyltransferase_1637857..1638087_NEGATIVE 327 990 948 219 173 NC_003454:FN0951|5end_Precorrin-3B_C17-methyltransferase_1608496..1608726_NEGATIVE 288 767 726 117 76 NC_003454:FN2108|5end_galactose-1-phosphate_uridylyltransferase_619319..619549_POSITIVE 287 987 949 172 134 NC_003454:FN0104|5end_Acetyltransferase_739896..740126_NEGATIVE 280 1840 1791 111 70 NC_003454:FN0595|5end_UDP-N-acetylglucosamine_acyltransferase_1249228..1249458_POSITIVE 273 1204 1164 56 5 NC_003454:FN0182|5end_Sarcosine_oxidase_alpha_subunit_807066..807296_NEGATIVE 264 1425 1388 111 71 NC_003454:FN1419|5end_methionine_gamma-lyase_2080565..2080795_POSITIVE 261 1828 1785 52 4 NC_003454:FN1826|5end_Protease_315886..316116_NEGATIVE 260 329 289 90 43 NC_003454:FN0163|5end_5-methyltetrahydrofolate--homocysteine_methyltransferase_791318..791548_POSITIVE 259 1837 1792 108 56 NC_003454:FN1829|5end_hypothetical_protein_318556..318786_NEGATIVE 258 703 669 41 7 NC_003454:FN0599|5end_Transposase_1253833..1254063_POSITIVE 258 970 927 152 111 NC_003454:FN0332|5end_Magnesium_and_cobalt_transport_protein_corA_967230..967460_NEGATIVE 258 853 815 123 73 NC_003454:FN0044|5end_Shikimate_5-dehydrogenase_682701..682931_POSITIVE 257 118 71 156 98 NC_003454:FN0500|5end_hypothetical_protein_1148943..1149173_POSITIVE 255 1830 1782 73 10 NC_003454:FN1759|5end_Hydroxymethylpyrimidine_kinase_254765..254995_NEGATIVE 251 650 601 152 104 NC_003454:FN1370|5end_Endonuclease_2019349..2019579_NEGATIVE 250 1826 1781 102 63 NC_003454:FN1291|5end_hypothetical_protein_1949207..1949437_NEGATIVE 250 1827 1784 100 51 NC_003454:FN0989|5end_phosphoribosylaminoimidazole_carboxylase_catalytic_subunit_1641667..1641897_NEGATIVE 250 375 333 49 4 NC_003454:FN0611|5end_Threonyl-tRNA_synthetase_1268359..1268589_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 314 369 326 140 97 NC_003454:FN1752|3end_Regulatory_protein_TENI_248591..248741_NEGATIVE 288 767 726 117 76 NC_003454:FN2107|3end_galactokinase_619399..619549_POSITIVE 280 1840 1791 93 52 NC_003454:FN0594|3end_(3R)-hydroxymyristoyl-[acyl_carrier_protein]_dehydratase_1249290..1249440_POSITIVE 268 1220 1173 66 13 NC_003454:FN0183|3end_Glycerol-3-phosphate_dehydrogenase_807078..807228_NEGATIVE 259 1837 1792 93 41 NC_003454:FN1830|3end_DNA_polymerase_III_subunits_gamma_and_tau_318571..318721_NEGATIVE 258 970 927 135 94 NC_003454:FN0333|3end_Glycerol_uptake_operon_antiterminator_regulatory_protein_967247..967397_NEGATIVE 251 650 601 146 98 NC_003454:FN1371|3end_Ribonuclease_HII_2019355..2019505_NEGATIVE 250 1827 1784 88 39 NC_003454:FN0990|3end_Phosphoribosylformylglycinamidine_synthase_1641679..1641829_NEGATIVE 244 838 812 63 34 NC_003454:FN0982|3end_bifunctional_phosphoribosylaminoimidazolecarboxamide_formyltransferase/IMP_cyclohydrolase_1634137..1634287_NEGATIVE 243 980 936 61 10 NC_003454:FN0852|3end_Hydrolase_1510903..1511053_POSITIVE 242 218 171 127 74 NC_003454:FN0944|3end_Na+_driven_multidrug_efflux_pump_1597488..1597638_NEGATIVE 242 1205 1163 81 34 NC_003454:FN0215|3end_MGTC/SAPB_Family_membrane_protein_839240..839390_NEGATIVE 242 1828 1790 89 49 NC_003454:FN1930|3end_Phosphatidylglycerophosphatase_A_429744..429894_NEGATIVE 240 1190 1141 51 2 NC_003454:FN1271|3end_Protease_IV_1926745..1926895_NEGATIVE 240 528 491 108 67 NC_003454:FN0409|3end_Acetyl-coenzyme_A_carboxylase_carboxyl_transferase_subunit_alpha_1047298..1047448_POSITIVE 240 1676 1633 120 80 NC_003454:FN0013|3end_Transporter_652639..652789_POSITIVE 240 1018 973 93 51 NC_003454:FN1727|3end_Chloride_channel_protein_226062..226212_NEGATIVE 239 184 148 142 102 NC_003454:FN1441|3end_PTS_system,_fructose-specific_IIABC_component_2110123..2110273_POSITIVE 239 1827 1783 86 37 NC_003454:FN1608|3end_Ribosomal_protein_L11_methyltransferase_117909..118059_NEGATIVE 238 843 811 63 26 NC_003454:FN1639|3end_SSU_ribosomal_protein_S3P_137504..137654_NEGATIVE