Origin IGS: agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaggcttgtcttgtgaaaaaaatcttcttttatcagaaaatatagatagtaccccttacttataagaatattagaaacatcttttataaattctatatggtcatgatactctttttgaatatcaatttttatctttgttctttcttttatccatttaataatatctgcataagaggtaaaaaaacttgtactacaattatttctaatcaaaagttcggacaaaaaatctttaaaaggaagcaatacatatgctaagggatttttctctttgtctatgcttaatgcaaaatattgtttggcatagaatataaattcatctttttccatagaagaacaaaaaaactctgctattttttctataaaatccaagtagccaagttttttcatcttcaataaaatattcattttaatatacataaataatatagaaaaagaatcttttagttctttcattcccatcttagttagatttatactttttgtattttttataatatgttctttatcatctgaatttgttatagatactttgttttgtcttaattcaagtccattttttgttttgcaaataaagtagttgtcctcttttttactatggtaaaaaattaactgatatggtaccttataaagaatttcattccctttttttgtttcacccttgtataagcaccctgcataattttctccaaaaacaacacctgttgtatcaaaggatgatatagaaactcctgataaaatttcacctgcttcaagagctttaagtattttaggaattataaatctaacaatctctttctcctcatatactcccatctcatgcagtctttttgtcataataatgattttgtcaaaaagttcttctggaaagtcattggaatttgcaaatgtcatatctttgtcatttttttcagtatcttcgtcatcttgttcatagcccaaatataaagacagtggaattatctttctgtttgttttattaaaaatatcaaataaactcaaaatattcatctcctctctatttattattaaaaatcttcaaacgaaaatacatcattagctgtatagttaagtgctttacatattcact Mask Tandem Repeat Region ================================================ agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Find is-nt database================================================ Query_seq: FN1713:FN1714|FN1713:FN1714:tRNA (Uracil-5-) -methyltransferase:hypothetical protein:->->:209029..210115 1087 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1713:FN1714|FN1713:FN1714:tRNA (Uracil-5-) -methyltransferase:hypothetical protein:->->:209029..210115 1087 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1713:FN1714|FN1713:FN1714:tRNA (Uracil-5-) -methyltransferase:hypothetical protein:->->:209029..210115 1087 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Predict ORF larger than 30AA ================================================ Protein_Len: 48 Strand: + Start: 336 End: 479 ............................................................................................................................................................................................................................................................................................................................................... M K Q V K F Y Q E F L Y H P L I Q Q V L F L E K I M Q G A Y T R V K Q K K G M K F F I R Y H I S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 62 End: 1087 ............................................................. M I N R E E M N I L S L F D I F N K T N R K I I P L S L Y L G Y E Q D D E D T E K N D K D M T F A N S N D F P E E L F D Protein_Len: 60 Strand: - Start: 836 End: 1042 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K Q G F K Q N S I I T T C T K K G R I C I N N F P Y F F S C L Y F N I N L F L I M V M Y F K Y F I N R I N K Y T L P V M ............................................. Protein_Len: 32 Strand: - Start: 787 End: 882 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. A L C Y K A N L M S L S F F G K A Y T N S G K L S K K D S S K M ............................................................................................................................................................................................................. Protein_Len: 35 Strand: - Start: 695 End: 799 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q L H F F K A V Q I K Y F F Y C L K K T R R H F F I F K Y E I G F L M ................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 514 End: 702 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L V F F P S S N L C F L T D I V F E S S L S C I I F F V F L I F R V L I P I F S S F S E K E I N N I Y I L I F I K N F M ................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: - Start: 369 End: 473 ................................................................................................................................................................................................................................................................................................................................................................................ I M R Q Y L L H Q K Q L F N H L T S I C P H F L F L S H F E K Y P V M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 157 End: 369 ............................................................................................................................................................ L S I V N A F E L S K G S S S K S L I M I I V F L S C S I P T Y S S F S I T L N I I G L I S L A R S A P S I K D P T E M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 146 End: 286 ................................................................................................................................................. I Q A I F L I V F I S F F I V F I H C K C I G I V K W F F K K V F D N N H C F S Q M L H S Y M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 111 End: 227 .............................................................................................................. Y F L C F S L E V T K I N P S H V L H R L Y Q F F H C L Y S M Q L N W H S E M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: - Start: 34 End: 132 ................................. H H I K T Q L N K I I F L S S I F I K L K N S I K L L V F L F I M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 3 End: 98 .. S Y T F C K V I C S I I Y K R K F I K L L L Y L P S S Y K S N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 408 End: 437 .......................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACCCTTGTATAAGCACCCTGCATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 689 End: 718 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAAGTTTTTTCATCTTCAATAAAAT................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 655 End: 684 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTATATTATTTATGTATATTAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 73 HP_score: -4.0 Tail_Score: -5.28414 Start: 963 End: 973 Full_Region: gtcatgatactcttt ttga ata tcaa tttttatctttgttc ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgaatatcaa.................................................................................................................. TransTerm Strand: - Conf: 48 HP_score: -2.6 Tail_Score: -3.74608 Start: 964 End: 984 Full_Region: aattctatatggtca tgatactc ttttt gaatatca atttttatctttgtt ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgatactctttttgaatatca....................................................................................................... Find igs database================================================ Query_seq: FN1713:FN1714|FN1713:FN1714:tRNA (Uracil-5-) -methyltransferase:hypothetical protein:->->:209029..210115 1087 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Intra-Species Hit: Count: 1 Min: 1 Max: 1087 Len: 1087 Subject: NC_003454_FN1713_FN1714|tRNA (Uracil-5-) -methyltransferase:hypothetical protein|POSITIVE:POSITIVE|[209029,210115]|1087 HSP 1 e-value: 0.0 bit: 1947.0 Len: 1087 Query Start:1 Query End:1087 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1087 agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgnnnnnnntgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacnnnnnnngggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagnnnnnnngttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagnnnnnnnacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagannnnnnncacaagacaagcctt agtgaatatgtaaagcacttaactatacagctaatgatgtattttcgtttgaagatttttaataataaatagagaggagatgaatattttgagtttatttgatatttttaataaaacaaacagaaagataattccactgtctttatatttgggctatgaacaagatgacgaagatactgaaaaaaatgacaaagatatgacatttgcaaattccaatgactttccagaagaactttttgacaaaatcattattatgacaaaaagactgcatgagatgggagtatatgaggagaaagagattgttagatttataattcctaaaatacttaaagctcttgaagcaggtgaaattttatcaggagtttctatatcatcctttgatacaacaggtgttgtttttggagaaaattatgcagggtgcttatacaagggtgaaacaaaaaaagggaatgaaattctttataaggtaccatatcagttaattttttaccatagtaaaaaagaggacaactactttatttgcaaaacaaaaaatggacttgaattaagacaaaacaaagtatctataacaaattcagatgataaagaacatattataaaaaatacaaaaagtataaatctaactaagatgggaatgaaagaactaaaagattctttttctatattatttatgtatattaaaatgaatattttattgaagatgaaaaaacttggctacttggattttatagaaaaaatagcagagtttttttgttcttctatggaaaaagatgaatttatattctatgccaaacaatattttgcattaagcatagacaaagagaaaaatcccttagcatatgtattgcttccttttaaagattttttgtccgaacttttgattagaaataattgtagtacaagtttttttacctcttatgcagatattattaaatggataaaagaaagaacaaagataaaaattgatattcaaaaagagtatcatgaccatatagaatttataaaagatgtttctaatattcttataagtaaggggtactatctatattttctgataaaagaagatttttttcacaagacaagcctt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUGAAUAUGUAAAGCACUUAACUAUACAGCUAAUGAUGUAUUUUCGUUUGAAGAUUUUUAAUAAUAAAUAGAGAGGAGAUGAAUAUUUUGAGUUUAUUUGAUAUUUUUAAUAAAACAAACAGAAAGAUAAUUCCACUGUCUUUAUAUUUGGGCUAUGAACAAGAUGACGAAGAUACUGAAAAAAAUGACAAAGAUAUGACAUUUGCAAAUUCCAAUGACUUUCCAGAAGAACUUUUUGACAAAAUCAUUAUUAUGACAAAAAGACUGCAUGAGAUGGGAGUAUAUGAGGAGAAAGAGAUUGUUAGAUUUAUAAUUCCUAAAAUACUUAAAGCUCUUGAAGCAGGUGAAAUUUUAUCAGGAGUUUCUAUAUCAUCCUUUGAUACAACAGGUGUUGUUUUUGGAGAAAAUUAUGCAGGGUGCUUAUACAAGGGUGAAACAAAAAAAGGGAAUGAAAUUCUUUAUAAGGUACCAUAUCAGUUAAUUUUUUACCAUAGUAAAAAAGAGGACAACUACUUUAUUUGCAAAACAAAAAAUGGACUUGAAUUAAGACAAAACAAAGUAUCUAUAACAAAUUCAGAUGAUAAAGAACAUAUUAUAAAAAAUACAAAAAGUAUAAAUCUAACUAAGAUGGGAAUGAAAGAACUAAAAGAUUCUUUUUCUAUAUUAUUUAUGUAUAUUAAAAUGAAUAUUUUAUUGAAGAUGAAAAAACUUGGCUACUUGGAUUUUAUAGAAAAAAUAGCAGAGUUUUUUUGUUCUUCUAUGGAAAAAGAUGAAUUUAUAUUCUAUGCCAAACAAUAUUUUGCAUUAAGCAUAGACAAAGAGAAAAAUCCCUUAGCAUAUGUAUUGCUUCCUUUUAAAGAUUUUUUGUCCGAACUUUUGAUUAGAAAUAAUUGUAGUACAAGUUUUUUUACCUCUUAUGCAGAUAUUAUUAAAUGGAUAAAAGAAAGAACAAAGAUAAAAAUUGAUAUUCAAAAAGAGUAUCAUGACCAUAUAGAAUUUAUAAAAGAUGUUUCUAAUAUUCUUAUAAGUAAGGGGUACUAUCUAUAUUUUCUGAUAAAAGAAGAUUUUUUUCACAAGACAAGCCUU .(((((..((((((((((.............((((((((.(((((.(((.((((.((((((........))))))(((((......((((.(((...((((.((((((..(((...((((...(((((((.......)))))))...))))...)))....)))))).))))...))).))))...((.((((.........))))))............))))).......))))..))))))))))))))))...........((((((((((((.((((((...(((((....(((((....)))))....)))))...)))))).((((((((((................))))))))))...))))...(((..(.(((((....)))))..)..)))....)))))))).)))))).)))).(((..(((.....((((((((.....((((((((..(((.((((....(((..((((((((....))))))))...)))..........((((.....))))..)))))))((((((.........................))))))....))))))))............((((((..........((((.....))))((((..................(((((((((((..(((((((..........))))))).......(((((..(((((((((.((((.((..............)).)))).)))))))))..).)))).)))))))))))...........(((((((....(((....)))......)))))))............))))........))))))..)))))))).......)))..)))...(((((.((((((((.....(((((((..(((((((...((.((((.((..((....))..)).)))).)))))))))............((((((((.....))))))))............((((((((..(((((.....))))).)))))))).....)))))))......))))))))...)))))......)))))............ (-204.54) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGGCUUGUCUUGUGAAAAAAAUCUUCUUUUAUCAGAAAAUAUAGAUAGUACCCCUUACUUAUAAGAAUAUUAGAAACAUCUUUUAUAAAUUCUAUAUGGUCAUGAUACUCUUUUUGAAUAUCAAUUUUUAUCUUUGUUCUUUCUUUUAUCCAUUUAAUAAUAUCUGCAUAAGAGGUAAAAAAACUUGUACUACAAUUAUUUCUAAUCAAAAGUUCGGACAAAAAAUCUUUAAAAGGAAGCAAUACAUAUGCUAAGGGAUUUUUCUCUUUGUCUAUGCUUAAUGCAAAAUAUUGUUUGGCAUAGAAUAUAAAUUCAUCUUUUUCCAUAGAAGAACAAAAAAACUCUGCUAUUUUUUCUAUAAAAUCCAAGUAGCCAAGUUUUUUCAUCUUCAAUAAAAUAUUCAUUUUAAUAUACAUAAAUAAUAUAGAAAAAGAAUCUUUUAGUUCUUUCAUUCCCAUCUUAGUUAGAUUUAUACUUUUUGUAUUUUUUAUAAUAUGUUCUUUAUCAUCUGAAUUUGUUAUAGAUACUUUGUUUUGUCUUAAUUCAAGUCCAUUUUUUGUUUUGCAAAUAAAGUAGUUGUCCUCUUUUUUACUAUGGUAAAAAAUUAACUGAUAUGGUACCUUAUAAAGAAUUUCAUUCCCUUUUUUUGUUUCACCCUUGUAUAAGCACCCUGCAUAAUUUUCUCCAAAAACAACACCUGUUGUAUCAAAGGAUGAUAUAGAAACUCCUGAUAAAAUUUCACCUGCUUCAAGAGCUUUAAGUAUUUUAGGAAUUAUAAAUCUAACAAUCUCUUUCUCCUCAUAUACUCCCAUCUCAUGCAGUCUUUUUGUCAUAAUAAUGAUUUUGUCAAAAAGUUCUUCUGGAAAGUCAUUGGAAUUUGCAAAUGUCAUAUCUUUGUCAUUUUUUUCAGUAUCUUCGUCAUCUUGUUCAUAGCCCAAAUAUAAAGACAGUGGAAUUAUCUUUCUGUUUGUUUUAUUAAAAAUAUCAAAUAAACUCAAAAUAUUCAUCUCCUCUCUAUUUAUUAUUAAAAAUCUUCAAACGAAAAUACAUCAUUAGCUGUAUAGUUAAGUGCUUUACAUAUUCACU ............((((((................(((((.((....((((((.......((((((((((..(((((.....)))))...))))).)))))...(((((.((.....)).))))).(((((((((((..........((((.......))))..........))))))))))).....))))))....)))))))...((((((...(((...(((.((((((.((((.............(((((((((............((((((((....((((....))))..))))))))...........((((((((....(((((...((((((((..(((((((..............)))))))..))))))))..)))))..((((((....))))))..................)))))))).)))))))))..........((((.((((((((.(((.((((....(((...(((((((((.((((..........)))).)))))))))((((((((((.((...((..((((.......))))..))))))))))))))..............)))...)))).))).)))))))).))))..)))).)))))).)))...)))...))))))))))))...((((.((((((...((................(((((....)))))...(((((((((((.(((......((((((((......((((.....(((.....(((((...((((........................))))...))))).....)))..))))...)))))))).....((((((((((....(((((((..(((....)))..)))))))))))).))))).))).)))))))))))...((((.(((((....(((...........((((...(((.((..((..(((.(((..((((((((.((.......)).))))))))..))))))....))..)).)))...))))............)))))))).))))...............))...))))))))))........ (-187.45) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 286 310 263 50 1 NC_003454:FN0186|5end_Cytochrome_c-type_biogenesis_protein_ccdA_810853..811083_POSITIVE 285 850 807 188 144 NC_003454:FN0055|5end_Ribosomal-protein-alanine_acetyltransferase_692158..692388_POSITIVE 279 299 263 37 1 NC_003454:FN0804|5end_Cytochrome_C-type_biogenesis_protein_ccdA_1464609..1464839_NEGATIVE 266 379 331 70 20 NC_003454:FN0113|5end_Heat-inducible_transcription_repressor_hrcA_746557..746787_POSITIVE 258 396 362 201 173 NC_003454:FN1487|5end_hypothetical_protein_2170020..2170250_NEGATIVE 258 422 381 180 133 NC_003454:FN1111|5end_Dipeptide-binding_protein_1756181..1756411_NEGATIVE 251 400 365 201 172 NC_003454:FN0385|5end_hypothetical_protein_1017920..1018150_POSITIVE 246 869 829 122 77 NC_003454:FN0928|5end_O-sialoglycoprotein_endopeptidase_1583026..1583256_NEGATIVE 244 790 741 134 81 NC_003454:FN0406|5end_Alanine_racemase,_biosynthetic_1044574..1044804_NEGATIVE 241 399 356 194 150 NC_003454:FN1641|5end_SSU_ribosomal_protein_S19P_138827..139057_NEGATIVE 239 1059 1011 151 102 NC_003454:FN1197|5end_hypothetical_protein_1857676..1857906_NEGATIVE 239 823 781 210 153 NC_003454:FN1541|5end_Heptaprenyl_diphosphate_synthase_component_II_55215..55445_POSITIVE 235 814 776 35 5 NC_003454:FN1084|5end_hypothetical_protein_1728661..1728891_POSITIVE 234 367 323 68 24 NC_003454:FN0597|5end_Lipid-A-disaccharide_synthase_1250814..1251044_POSITIVE 234 879 831 197 149 NC_003454:FN1560|5end_hypothetical_protein_82982..83212_NEGATIVE 233 358 315 90 49 NC_003454:FN1847|5end_DTDP-4-dehydrorhamnose_3,5-epimerase_336142..336372_POSITIVE 231 543 503 61 31 NC_003454:FN0885|5end_Hemin-binding_periplasmic_protein_hmuT_precursor_1545615..1545845_NEGATIVE 230 376 340 226 190 NC_003454:FN0273|5end_Butyrate-acetoacetate_CoA-transferase_subunit_B_899423..899653_POSITIVE 225 169 138 99 66 NC_003454:FN0706|5end_Hypothetical_cytosolic_protein_1364823..1365053_POSITIVE 224 581 549 231 196 NC_003454:FN1349|5end_ABC_transporter_permease_protein_2002355..2002585_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 310 318 272 72 21 NC_003454:FN0219|3end_Autolysin_response_regulator_842594..842744_NEGATIVE 285 850 807 86 42 NC_003454:FN0054|3end_tyrosyl-tRNA_synthetase_692136..692286_POSITIVE 251 457 411 70 24 NC_003454:FN0115|3end_hypothetical_protein_748215..748365_NEGATIVE 250 749 702 67 16 NC_003454:FN0430|3end_50S_ribosomal_protein_L19_1071791..1071941_POSITIVE 246 869 829 141 96 NC_003454:FN0929|3end_ATP/GTP_hydrolase_1583007..1583157_NEGATIVE 244 790 741 54 1 NC_003454:FN0407|3end_hypothetical_protein_1044654..1044804_NEGATIVE 242 880 835 72 29 NC_003454:FN1221|3end_hypothetical_protein_1881290..1881440_POSITIVE 239 1059 1011 148 99 NC_003454:FN1198|3end_Transporter_1857679..1857829_NEGATIVE 238 377 342 151 117 NC_003454:FN1590|3end_Hypothetical_lipoprotein_100560..100710_NEGATIVE 234 367 323 58 14 NC_003454:FN0596|3end_hypothetical_protein_1250884..1251034_POSITIVE 234 879 831 147 99 NC_003454:FN1561|3end_Hypothetical_cytosolic_protein_83032..83182_NEGATIVE 233 358 315 93 52 NC_003454:FN1846|3end_hypothetical_protein_336225..336375_POSITIVE 225 169 138 80 47 NC_003454:FN0705|3end_DNA_polymerase_I_1364884..1365034_POSITIVE 225 427 387 55 10 NC_003454:FN0051|3end_hypothetical_protein_688783..688933_NEGATIVE 225 877 835 49 1 NC_003454:FN1952|3end_Na(+)-linked_D-alanine_glycine_permease_458943..459093_NEGATIVE 224 1066 1023 88 49 NC_003454:FN1876|3end_4-methyl-5(B-hydroxyethyl)-thiazole_monophosphate_biosynthesis_enzyme_364462..364612_NEGATIVE 221 363 331 135 100 NC_003454:FN0264|3end_hypothetical_protein_891331..891481_POSITIVE 220 174 136 41 7 NC_003454:FN0623|3end_Malonate_transporter_1282988..1283138_POSITIVE 218 654 611 126 87 NC_003454:FN0847|3end_TPR-repeat-containing_proteins_1507132..1507282_POSITIVE 216 307 266 58 9 NC_003454:FN0519|3end_Hypothetical_exported_24-amino_acid_repeat_protein_1170638..1170788_NEGATIVE