Origin IGS: agaattagcttttttggtttatttctacaacatcatattcatttctttaaattttgaaagccaattatgtaaaataacagaagaaactaagccaatatcaatagcaacataattaatagatttatgattgattaaaattctattaattgtttgtaatttaaaatctttggaataaattctatttttaccgtttcttaaaatatcatatccatgttttttaattaaagaaattaaatatttaatagcagatttgcgaacattaagagattttgctattgaactagtggtttcaccctttaatcttctctcatatatttcaattttatcttctcttgttaattactcatgaaaaaactgcacctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagtatcttaatatttaattaatatgatttaaataaatggtatcaataagagtgtagaaaaaagtctgtaaatatttaagaatagtcttcttatgatagaatattgaactgcacccaaaatcttggacacaagattggaggtgcagttttttcatgagtaattaacaagagaagataaaattgaaatatatgagagaagattaaagggtgaaaccactagttcaatagcaaaatctcttaatgttcgcaaatctgctattaaatatttaatttctttaattaaaaaacatggatatgatattttaagaaacggtaaaaatagaatttattccaaagattttaaattacaaacaattaatagaattttaatcaatcataaatctattaattatgttgctattgatattggcttagtttcttctgttattttacataattggctttcaaaatttaaagaaatgaatatgatgttgtagaaataaaccaaaaaagctaattct Mask Tandem Repeat Region ================================================ agaattagcttttttggtttatttctacaacatcatattcatttctttaaattttgaaagccaattatgtaaaataacagaagaaactaagccaatatcaatagcaacataattaatagatttatgattgattaaaattctattaattgtttgtaatttaaaatctttggaataaattctatttttaccgtttcttaaaatatcatatccatgttttttaattaaagaaattaaatatttaatagcagatttgcgaacattaagagattttgctattgaactagtggtttcaccctttaatcttctctcatatatttcaattttatcttctcttgttaattactcatgaaaaaactgcacctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Find is-nt database================================================ Query_seq: FN1681:FN1682|FN1681:FN1682:hypothetical protein:Heteropolysaccharide repeat unit export protein:<-<-:176653..177152 500 agaattagcttttttggtttatttctacaacatcatattcatttctttaaattttgaaagccaattatgtaaaataacagaagaaactaagccaatatcaatagcaacataattaatagatttatgattgattaaaattctattaattgtttgtaatttaaaatctttggaataaattctatttttaccgtttcttaaaatatcatatccatgttttttaattaaagaaattaaatatttaatagcagatttgcgaacattaagagattttgctattgaactagtggtttcaccctttaatcttctctcatatatttcaattttatcttctcttgttaattactcatgaaaaaactgcacctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1681:FN1682|FN1681:FN1682:hypothetical protein:Heteropolysaccharide repeat unit export protein:<-<-:176653..177152 500 agaattagcttttttggtttatttctacaacatcatattcatttctttaaattttgaaagccaattatgtaaaataacagaagaaactaagccaatatcaatagcaacataattaatagatttatgattgattaaaattctattaattgtttgtaatttaaaatctttggaataaattctatttttaccgtttcttaaaatatcatatccatgttttttaattaaagaaattaaatatttaatagcagatttgcgaacattaagagattttgctattgaactagtggtttcaccctttaatcttctctcatatatttcaattttatcttctcttgttaattactcatgaaaaaactgcacctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 106 Min: 43 Max: 360 Len: 318 Subject: gi|34762854|ref|ZP_00143838.1| Transposase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] HSP 1 e-value: 1.0E-37 bit: 152.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T K E D K I E I Y E R R L K G E T I P A L A K T F N I T E S K I K Y F I A L I K K H G Y T I L R N G K N R I Y S K E F K L Q A I N R I L S N Y E S V N S V A I D I G L P S D T I L H N W L L K F K E ................................................................................................................................................................. Subject: UniRef90_Q7P6Y3 Cluster: Transposase; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: Transposase - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 1.0E-37 bit: 152.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T K E D K I E I Y E R R L K G E T I P A L A K T F N I T E S K I K Y F I A L I K K H G Y T I L R N G K N R I Y S K E F K L Q A I N R I L S N Y E S V N S V A I D I G L P S D T I L H N W L L K F K E ................................................................................................................................................................. Subject: gi|19705192|ref|NP_602687.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 9.0E-37 bit: 149.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E N K I E I Y E R R K N G E T F S S L A K A F D V H K S N I E Y L I A L I K K H G F D I L R K D K N R L Y S K D F K L Q I I N R I L V N H E S I N S V A I D I G F P A P S I L H N W L S K F K E ................................................................................................................................................................. Subject: UniRef90_Q8RHV6 Cluster: Transposase; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Transposase - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 9.0E-37 bit: 149.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E N K I E I Y E R R K N G E T F S S L A K A F D V H K S N I E Y L I A L I K K H G F D I L R K D K N R L Y S K D F K L Q I I N R I L V N H E S I N S V A I D I G F P A P S I L H N W L S K F K E ................................................................................................................................................................. Subject: gi|19703820|ref|NP_603382.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 3.0E-36 bit: 147.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E E K I E I F E R R K M G E T I S S L A K A F N I H E S N I K Y L I A L I E K Y G N N I L R K G K N R A Y S K E F K L Q A I N R I L I N H E S I N S V A L D I G L V S A S I L H N W L S K F K E ................................................................................................................................................................. Subject: gi|19704175|ref|NP_603737.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 6.0E-36 bit: 146.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E E K I E I F E R R K M G E T I A S L A K A F N I H E S N I K Y L I A L I E K Y G N N I L R K G K N R A Y S K E F K L Q A I N R I L I N H E S I N S V A L D I G L V S A S I L H N W L S K F K E ................................................................................................................................................................. Subject: gi|19703480|ref|NP_603042.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 2.0E-34 bit: 141.0 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 95 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T R E D K I E I Y E R R K N G E T I S S L A K S F N I H E S K I K Y L I V L I K K H G Y D I L R N G K N R Y Y S R E F K L Q T I N R V L V N Y E S V R Q V A I D I G L A S D G I L H N ................................................................................................................................................................. Subject: UniRef90_Q8RGZ0 Cluster: Transposase; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Transposase - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 2.0E-34 bit: 141.0 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 95 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T R E D K I E I Y E R R K N G E T I S S L A K S F N I H E S K I K Y L I V L I K K H G Y D I L R N G K N R Y Y S R E F K L Q T I N R V L V N Y E S V R Q V A I D I G L A S D G I L H N ................................................................................................................................................................. Subject: gi|19704121|ref|NP_603683.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 2.0E-34 bit: 141.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E D K I E I F E R R K M G E T I A S L A K A F N I H E S N I K Y L I A L I E K Y G N N I L R K G K N R A Y S K E F K L Q A I N R V L V N Y E S V R Q V A I D I G L A S D G I L H N W L S K F K E ................................................................................................................................................................. Subject: gi|19704775|ref|NP_604337.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 2.0E-34 bit: 141.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E D K I E I F E R R K M G E T I A S L A K A F N I H E S N I K Y L I A L I E K Y G N N I L R K G K N R A Y S K E F K L Q A I N R V L V N Y E S V R Q V A I D I G L A S D G I L H N W L S K F K E ................................................................................................................................................................. Subject: UniRef90_Q8R6I1 Cluster: Transposase; n=4; Fusobacterium nucleatum subsp. nucleatum|Rep: Transposase - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 2.0E-34 bit: 141.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T R E D K I E I F E R R K M G E T I A S L A K A F N I H E S N I K Y L I A L I E K Y G N N I L R K G K N R A Y S K E F K L Q A I N R V L V N Y E S V R Q V A I D I G L A S D G I L H N W L S K F K E ................................................................................................................................................................. Subject: gi|19704778|ref|NP_604340.1| Transposase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] HSP 1 e-value: 1.0E-19 bit: 92.8 Len: 213 Query Start:148 Query End:360 Subject Strand: null Subject Start: 1 Subject End: 71 ................................................................................................................................................... V Q F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T ............................................................................................................................................ ................................................................................................................................................... M Q F F V S K L T R E N K I E I Y E R R K N G E T F S S L A K A F D V H K S N I E Y L I A L I K K H G F D I L R K D K N R L Y S K E K R K E T ............................................................................................................................................ Subject: UniRef90_Q8RDR2 Cluster: Transposase; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Transposase - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 1.0E-19 bit: 92.8 Len: 213 Query Start:148 Query End:360 Subject Strand: null Subject Start: 1 Subject End: 71 ................................................................................................................................................... V Q F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T ............................................................................................................................................ ................................................................................................................................................... M Q F F V S K L T R E N K I E I Y E R R K N G E T F S S L A K A F D V H K S N I E Y L I A L I K K H G F D I L R K D K N R L Y S K E K R K E T ............................................................................................................................................ Subject: gi|116626988|ref|YP_819607.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 7.0E-16 bit: 80.1 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R N Q G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K N R Y D S P E L K Q E M I D K V L L E D R S Q Q S V S L D Y C L P S G G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: UniRef90_Q03N11 Cluster: Transposase; n=2; Streptococcus thermophilus|Rep: Transposase - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 7.0E-16 bit: 80.1 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R N Q G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K N R Y D S P E L K Q E M I D K V L L E D R S Q Q S V S L D Y C L P S G G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|81096535|ref|ZP_00874876.1| IS861, transposase OrfA [Streptococcus suis 89/1591] HSP 1 e-value: 9.0E-16 bit: 79.7 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K I K I Y E L R Q S G Q S I K N L S N Q F T I S E S V I Q Y M L R L I D R Y G I N I V K K G K N T Y Y P P E L K Q E M I D K V L I E G L S L N Q V A L D Y A L P N R G T L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|81096833|ref|ZP_00875162.1| IS861, transposase OrfA [Streptococcus suis 89/1591] HSP 1 e-value: 9.0E-16 bit: 79.7 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K I K I Y E L R Q S G Q S I K N L S N Q F T I S E S V I Q Y M L R L I D R Y G I N I V K K G K N T Y Y P P E L K Q E M I D K V L I E G L S L N Q V A L D Y A L P N R G T L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|77409605|ref|ZP_00786281.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 1.0E-15 bit: 79.0 Len: 309 Query Start:43 Query End:351 Subject Strand: null Subject Start: 3 Subject End: 105 .......................................... F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ..................................................................................................................................................... .......................................... F S D E L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ..................................................................................................................................................... Subject: gi|116627004|ref|YP_819623.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 1.0E-15 bit: 79.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R K H G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R Y D S P D L K Q E M I D K V L L E G R S Q K S V S L D Y C L S S G G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: UniRef90_Q03MZ5 Cluster: Transposase; n=7; Streptococcus thermophilus|Rep: Transposase - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 1.0E-15 bit: 79.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R K H G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R Y D S P D L K Q E M I D K V L L E G R S Q K S V S L D Y C L S S G G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|19746310|ref|NP_607446.1| hypothetical protein spyM18_1344 [Streptococcus pyogenes MGAS8232] HSP 1 e-value: 3.0E-15 bit: 78.2 Len: 294 Query Start:43 Query End:336 Subject Strand: null Subject Start: 7 Subject End: 104 .......................................... T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................................... .......................................... T Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................................... Subject: gi|71902836|ref|YP_279639.1| transposase [Streptococcus pyogenes MGAS6180] HSP 1 e-value: 3.0E-15 bit: 78.2 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L L T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94989684|ref|YP_597784.1| Transposase [Streptococcus pyogenes MGAS10270] HSP 1 e-value: 3.0E-15 bit: 78.2 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K I K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q K I I N K V L I D G Q S Q K Q T S L D Y A L L T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|76799012|ref|ZP_00781209.1| IS861, transposase OrfA [Streptococcus agalactiae 18RS21] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77407692|ref|ZP_00784447.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77407814|ref|ZP_00784567.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77407882|ref|ZP_00784634.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77407993|ref|ZP_00784742.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77408917|ref|ZP_00785641.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77409244|ref|ZP_00785952.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|77409681|ref|ZP_00786349.1| IS861, transposase OrfA [Streptococcus agalactiae COH1] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|76787008|ref|YP_329141.1| IS861, transposase orfA [Streptococcus agalactiae A909] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|76787121|ref|YP_330155.1| IS861, transposase orfA [Streptococcus agalactiae A909] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|22537225|ref|NP_688076.1| IS861, transposase OrfA [Streptococcus agalactiae 2603V/R] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|22537669|ref|NP_688520.1| IS861, transposase OrfA [Streptococcus agalactiae 2603V/R] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|50914405|ref|YP_060377.1| Transposase [Streptococcus pyogenes MGAS10394] HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W L A Q Y K K .................................................................................................................................................. Subject: UniRef90_Q3DRN5 Cluster: IS861, transposase OrfA; n=6; Streptococcus agalactiae|Rep: IS861, transposase OrfA - Streptococcus agalactiae 18RS21 HSP 1 e-value: 3.0E-15 bit: 77.8 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K L E I Y E L R K I G M S W S Q I S Q R Y D V R I S N L K Y M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K ................................................................................................................................................................. Subject: gi|94994579|ref|YP_602677.1| Transposase [Streptococcus pyogenes MGAS10750] HSP 1 e-value: 4.0E-15 bit: 77.4 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D V K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: UniRef90_Q1J650 Cluster: Transposase; n=16; Streptococcus pyogenes|Rep: Transposase - Streptococcus pyogenes serotype M4 (strain MGAS10750) HSP 1 e-value: 4.0E-15 bit: 77.4 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D V K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94990655|ref|YP_598755.1| Transposase [Streptococcus pyogenes MGAS10270] HSP 1 e-value: 6.0E-15 bit: 77.0 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94987805|ref|YP_595906.1| transposase [Streptococcus pyogenes MGAS9429] HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q K I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94988763|ref|YP_596864.1| transposase [Streptococcus pyogenes MGAS9429] HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q K I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94991680|ref|YP_599779.1| Transposase [Streptococcus pyogenes MGAS2096] HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q K I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|94992588|ref|YP_600687.1| Transposase [Streptococcus pyogenes MGAS2096] HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q K I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|58337980|ref|YP_194565.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R - R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T K Q D K I Y I F E E W T L E N R G G T Y L G K K Y G I R R E N V N Y L I K L I K I H G F S I L D K P Y T N - Y S K E Y K E R A I K R V L F E N E T V N A V A L D L G L T S R S I L S N W S H S Y K E ................................................................................................................................................................. Subject: UniRef90_Q5FIE0 Cluster: Transposase; n=1; Lactobacillus acidophilus|Rep: Transposase - Lactobacillus acidophilus HSP 1 e-value: 7.0E-15 bit: 76.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R - R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T K Q D K I Y I F E E W T L E N R G G T Y L G K K Y G I R R E N V N Y L I K L I K I H G F S I L D K P Y T N - Y S K E Y K E R A I K R V L F E N E T V N A V A L D L G L T S R S I L S N W S H S Y K E ................................................................................................................................................................. Subject: gi|15674401|ref|NP_268575.1| conserved hypothetical protein, IS861 associated [Streptococcus pyogenes M1 GAS] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 5 Subject End: 101 .......................................... R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ....................................................................................................................................................................... Subject: gi|15675274|ref|NP_269448.1| conserved hypothetical protein - transposon IS861 associated [Streptococcus pyogenes M1 GAS] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 5 Subject End: 101 .......................................... R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ....................................................................................................................................................................... Subject: gi|56807561|ref|ZP_00365479.1| COG2963: Transposase and inactivated derivatives [Streptococcus pyogenes M49 591] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 5 Subject End: 101 .......................................... R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ....................................................................................................................................................................... Subject: gi|55822193|ref|YP_140634.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S P D Y C L P S G G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|71909986|ref|YP_281536.1| transposase [Streptococcus pyogenes MGAS5005] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 5 Subject End: 101 .......................................... R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ....................................................................................................................................................................... Subject: gi|71910903|ref|YP_282453.1| transposase [Streptococcus pyogenes MGAS5005] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 5 Subject End: 101 .......................................... R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N H Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ....................................................................................................................................................................... Subject: gi|71903736|ref|YP_280539.1| transposase [Streptococcus pyogenes MGAS6180] HSP 1 e-value: 1.0E-14 bit: 76.3 Len: 312 Query Start:43 Query End:354 Subject Strand: null Subject Start: 4 Subject End: 107 .......................................... F F H E * L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .................................................................................................................................................. .......................................... Y F F M K F N Q E T K V K I Y E L R Q M G E S I K S I S K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N E V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .................................................................................................................................................. Subject: gi|55820139|ref|YP_138581.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 1.0E-14 bit: 75.9 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R K H G Q T F N Q L S K R F G V D A S G L R Y M M R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L S S G G M L P N W I A Q N K K ................................................................................................................................................................. Subject: gi|24379046|ref|NP_721001.1| hypothetical protein SMU.566c [Streptococcus mutans UA159] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V L I Y E L K N Q G Y S L E Q L S N K F G I K I S N L S Y M I K L I D H Y G I E I V K K G K N R Y Y S P E L K Q E I I D K V L L E G R S Q I R V S L D Y A L P S H G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|24379225|ref|NP_721180.1| hypothetical protein SMU.766 [Streptococcus mutans UA159] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V L I Y E L K N Q G Y S L E Q L S N K F G I K I S N L S Y M I K L I D H Y G I E I V K K G K N R Y Y S P E L K Q E I I D K V L L E G R S Q I R V S L D Y A L P S H G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|24379786|ref|NP_721741.1| hypothetical protein SMU.1379 [Streptococcus mutans UA159] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V L I Y E L K N Q G Y S L E Q L S N K F G I K I S N L S Y M I K L I D H Y G I E I V K K G K N R Y Y S P E L K Q E I I D K V L L E G R S Q I R V S L D Y A L P S H G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|24379812|ref|NP_721767.1| hypothetical protein SMU.1408c [Streptococcus mutans UA159] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V L I Y E L K N Q G Y S L E Q L S N K F G I K I S N L S Y M I K L I D H Y G I E I V K K G K N R Y Y S P E L K Q E I I D K V L L E G R S Q I R V S L D Y A L P S H G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|24380246|ref|NP_722201.1| hypothetical protein SMU.1894c [Streptococcus mutans UA159] HSP 1 e-value: 4.0E-14 bit: 74.3 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V L I Y E L K N Q G Y S L E Q L S N K F G I K I S N L S Y M I K L I D H Y G I E I V K K G K N R Y Y S P E L K Q E I I D K V L L E G R S Q I R V S L D Y A L P S H G M L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|116628110|ref|YP_820729.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 1.0E-13 bit: 72.4 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R N Q G Y S L D Q L S N K F G I N I S N L S Y M I K L I D R Y G I E I A K K G K N R Y Y S P E L K Q E M I D K V L Y K G Y S Q D R V S L E Y A L P N R G T L P N W L A H Y K K ................................................................................................................................................................. Subject: UniRef90_Q03JT9 Cluster: Transposase; n=1; Streptococcus thermophilus LMD-9|Rep: Transposase - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 1.0E-13 bit: 72.4 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L T Y E D K V Q I Y E L R N Q G Y S L D Q L S N K F G I N I S N L S Y M I K L I D R Y G I E I A K K G K N R Y Y S P E L K Q E M I D K V L Y K G Y S Q D R V S L E Y A L P N R G T L P N W L A H Y K K ................................................................................................................................................................. Subject: gi|81097010|ref|ZP_00875327.1| IS861, transposase OrfA [Streptococcus suis 89/1591] HSP 1 e-value: 2.0E-13 bit: 72.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K I E I Y E L R Q S G Q S I K N L S N Q F T I S E S V I Q Y M L R L I D R Y G I N I V K K G K N T Y S P P E L K Q E M I D K V L L Q K Q S S L S V S L D Y A L P N R G T L P N W I A Q Y K K ................................................................................................................................................................. Subject: UniRef90_Q300F6 Cluster: IS861, transposase OrfA; n=2; Streptococcus suis 89/1591|Rep: IS861, transposase OrfA - Streptococcus suis 89/1591 HSP 1 e-value: 2.0E-13 bit: 72.0 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 101 .......................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S Y E D K I E I Y E L R Q S G Q S I K N L S N Q F T I S E S V I Q Y M L R L I D R Y G I N I V K K G K N T Y S P P E L K Q E M I D K V L L Q K Q S S L S V S L D Y A L P N R G T L P N W I A Q Y K K ................................................................................................................................................................. Subject: gi|58338114|ref|YP_194699.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 7.0E-13 bit: 70.1 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N E S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: UniRef90_Q5FI06 Cluster: Transposase; n=5; Lactobacillus acidophilus|Rep: Transposase - Lactobacillus acidophilus HSP 1 e-value: 7.0E-13 bit: 70.1 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N E S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|116628473|ref|YP_821092.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 2.0E-12 bit: 68.9 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 94 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L P S G G M L P N ................................................................................................................................................................. Subject: gi|58336474|ref|YP_193059.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-12 bit: 68.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N K S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|58337741|ref|YP_194326.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-12 bit: 68.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N K S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|58338194|ref|YP_194779.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-12 bit: 68.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N K S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|58336939|ref|YP_193524.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-12 bit: 68.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N K S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|58337575|ref|YP_194160.1| transposase [Lactobacillus acidophilus NCFM] HSP 1 e-value: 2.0E-12 bit: 68.6 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K G - E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L N K K Q R L K I Y N D W R N G N K S L S V I A S E I K L N R S T L Q Y M V N L I D R H G I E I Y D K S K E - L F T K E F K E K A I V R S L T G N N S I N Q L S L D L G L R S N G I L Y N W I R E Y K K ................................................................................................................................................................. Subject: gi|42519217|ref|NP_965147.1| hypothetical protein LJ1292 [Lactobacillus johnsonii NCC 533] HSP 1 e-value: 3.0E-12 bit: 68.2 Len: 297 Query Start:43 Query End:339 Subject Strand: null Subject Start: 4 Subject End: 102 .......................................... L T R E D K I E I Y E R R L K - G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ................................................................................................................................................................. .......................................... L S K Q D K I Y I Y N N W E R Y H K S L S Q L G R E Y R V R P D N L Y Y L I R L I D L H G L K I L - N K S Y S S Y S V E F K K T A I K R I L I N D E P A T Q V S L D L G L R S S G M I F N W L R K Y K E ................................................................................................................................................................. Subject: gi|55821756|ref|YP_140198.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 4.0E-12 bit: 67.4 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 94 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V V A S E L R Y M K R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L P S G G M L P N ................................................................................................................................................................. Subject: gi|55822009|ref|YP_140450.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 4.0E-12 bit: 67.4 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 94 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V V A S E L R Y M K R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L P S G G M L P N ................................................................................................................................................................. Subject: gi|55823675|ref|YP_142116.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 4.0E-12 bit: 67.4 Len: 276 Query Start:64 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 94 ............................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N ................................................................................................................................................................. ............................................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V V A S E L R Y M K R L I E R Y G I E I I K K G K H R Y D S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L P S G G M L P N ................................................................................................................................................................. Subject: UniRef90_Q5UU91 Cluster: Transposase; n=2; Lactobacillus|Rep: Transposase - Lactobacillus helveticus HSP 1 e-value: 6.0E-12 bit: 67.0 Len: 291 Query Start:43 Query End:333 Subject Strand: null Subject Start: 6 Subject End: 102 .......................................... R E D K I E I Y E R R L K G E - - T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ....................................................................................................................................................................... .......................................... K E Q K I E I Y - R K W K D E K I S I S Q L S K A Y K M N L A N L D Y M L R L I D M H G T D I L - N T R K R V Y S K K F K E Q T I E Q A I F G T K S D V Q L S L E L G F K S I G R L N N W L R E Y K E ....................................................................................................................................................................... Subject: gi|55821438|ref|YP_139880.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 8.0E-12 bit: 66.6 Len: 222 Query Start:118 Query End:339 Subject Strand: null Subject Start: 22 Subject End: 95 ..................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S ................................................................................................................................................................. ..................................................................................................................... L T Y E D K V Q I Y E L R K Q G Q T F N Q L S K R F G V D A S G L K Y M T R L I E R Y G I E I I K K G K N C Y Y S P E L K Q E M I D K V L L E G R S ................................................................................................................................................................. Subject: gi|55823364|ref|YP_141805.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 1.0E-11 bit: 65.9 Len: 222 Query Start:118 Query End:339 Subject Strand: null Subject Start: 22 Subject End: 95 ..................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S ................................................................................................................................................................. ..................................................................................................................... L T Y E D K V Q I Y E L R K H G Q T F N Q L S K R F G V D A S G L K Y M T R L I E R Y G I E I I K K G K N C Y Y S P E L K Q E M I D K V L L E G R S ................................................................................................................................................................. Subject: gi|55820303|ref|YP_138745.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 2.0E-11 bit: 65.1 Len: 261 Query Start:43 Query End:303 Subject Strand: null Subject Start: 2 Subject End: 88 .......................................... R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ..................................................................................................................................................................................................... .......................................... R K Q G E S F K Q L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K N H Y Y S P E L K Q E M I D K V L L E G R S Q K S V S L D Y C L S S G G M L P N W I A Q Y K K ..................................................................................................................................................................................................... Subject: gi|55820833|ref|YP_139275.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 210 Query Start:130 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 72 ................................................................................................................................. L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I ................................................................................................................................................................. ................................................................................................................................. L T Y E D K V Q I Y E L R N Q G E S F K R L S N Q F G V N V S G L K Y M V K L I D H Y G I N I I K K G K N R Y Y S P K L K R E M I D K V L L ................................................................................................................................................................. Subject: gi|21910547|ref|NP_664815.1| putative transposase associated protein [Streptococcus pyogenes MGAS315] HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 252 Query Start:43 Query End:294 Subject Strand: null Subject Start: 2 Subject End: 85 .......................................... G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .............................................................................................................................................................................................................. .......................................... G E S I K S I P K K F D M A E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K .............................................................................................................................................................................................................. Subject: UniRef90_UPI000046DC71 Cluster: IS861, transposase (orf1), IS3 family, truncated; n=1; Streptococcus thermophilus LMG 18311|Rep: IS861, transposase (orf1), IS3 family, truncated - Streptococcus thermophilus LMG 18311 HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 210 Query Start:130 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 72 ................................................................................................................................. L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I ................................................................................................................................................................. ................................................................................................................................. L T Y E D K V Q I Y E L R N Q G E S F K R L S N Q F G V N V S G L K Y M V K L I D H Y G I N I I K K G K N R Y Y S P K L K R E M I D K V L L ................................................................................................................................................................. Subject: gi|15901436|ref|NP_346040.1| IS3-Spn1, hypothetical protein, interruption [Streptococcus pneumoniae TIGR4] HSP 1 e-value: 4.0E-10 bit: 60.8 Len: 198 Query Start:142 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 68 ............................................................................................................................................. L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N ................................................................................................................................................................. ............................................................................................................................................. L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I N ................................................................................................................................................................. Subject: gi|116516401|ref|YP_816003.1| hypothetical protein SPD_0499 [Streptococcus pneumoniae D39] HSP 1 e-value: 4.0E-10 bit: 60.8 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 70 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|15902542|ref|NP_358092.1| Degenerate transposase (orf1) [Streptococcus pneumoniae R6] HSP 1 e-value: 4.0E-10 bit: 60.8 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 24 Subject End: 91 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: UniRef90_Q8DQU2 Cluster: Degenerate transposase; n=6; Streptococcus pneumoniae|Rep: Degenerate transposase - Streptococcus pneumoniae (strain ATCC BAA-255 / R6) HSP 1 e-value: 4.0E-10 bit: 60.8 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 24 Subject End: 91 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|15903491|ref|NP_359041.1| Degenerate transposase (orf1) [Streptococcus pneumoniae R6] HSP 1 e-value: 7.0E-10 bit: 60.1 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 23 Subject End: 90 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N L R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|50914079|ref|YP_060051.1| Transposase [Streptococcus pyogenes MGAS10394] HSP 1 e-value: 7.0E-10 bit: 60.1 Len: 285 Query Start:55 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 97 ...................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S ................................................................................................................................................................. ...................................................... L S Y Q D K L E I Y R L R K S G L S W P E L A N Q F G V N P S N L R Y T V R L M D R Y G V E I V K K Q K Y Q A Y S S E M K Q E M I N K V L K D G Q S L F S V S L D Y A F P N P G T L A N W I A ................................................................................................................................................................. Subject: UniRef90_Q5XCJ5 Cluster: Transposase; n=1; Streptococcus pyogenes serotype M6|Rep: Transposase - Streptococcus pyogenes serotype M6 HSP 1 e-value: 7.0E-10 bit: 60.1 Len: 285 Query Start:55 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 97 ...................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S ................................................................................................................................................................. ...................................................... L S Y Q D K L E I Y R L R K S G L S W P E L A N Q F G V N P S N L R Y T V R L M D R Y G V E I V K K Q K Y Q A Y S S E M K Q E M I N K V L K D G Q S L F S V S L D Y A F P N P G T L A N W I A ................................................................................................................................................................. Subject: gi|116516093|ref|YP_815869.1| hypothetical protein SPD_0359 [Streptococcus pneumoniae D39] HSP 1 e-value: 1.0E-9 bit: 59.3 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 70 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L S Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|15902399|ref|NP_357949.1| Degenerate transposase (orf1) [Streptococcus pneumoniae R6] HSP 1 e-value: 1.0E-9 bit: 59.3 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 24 Subject End: 91 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L S Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|15903384|ref|NP_358934.1| Degenerate transposase (orf1) [Streptococcus pneumoniae R6] HSP 1 e-value: 2.0E-9 bit: 58.9 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 22 Subject End: 89 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L T Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N S N L R Y M I K L I D H Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: UniRef90_Q93LI1 Cluster: Transposase; n=3; Lactobacillus delbrueckii subsp. lactis|Rep: Transposase - Lactobacillus delbrueckii subsp. lactis HSP 1 e-value: 2.0E-9 bit: 58.9 Len: 192 Query Start:43 Query End:234 Subject Strand: null Subject Start: 1 Subject End: 63 .......................................... L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .......................................................................................................................................................................................................................................................................... .......................................... M V D L I Q K H G E D I L D R P Q Q K - Y T A N F K L A A I D R V L L G G E A L S Q V S L D L G L T N T G I L A N W L R S F K E .......................................................................................................................................................................................................................................................................... Subject: gi|116627244|ref|YP_819863.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 4.0E-9 bit: 57.8 Len: 183 Query Start:157 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 63 ............................................................................................................................................................ L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K ................................................................................................................................................................. ............................................................................................................................................................ L T Y E D K V Q I Y E L R K Q G E S F K R L S K R F G V D A S G L R Y M T R L I D R Y G I N I I K K G K N R Y Y S P K L K ................................................................................................................................................................. Subject: UniRef90_Q03MA5 Cluster: Transposase; n=1; Streptococcus thermophilus LMD-9|Rep: Transposase - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 4.0E-9 bit: 57.8 Len: 183 Query Start:157 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 63 ............................................................................................................................................................ L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K ................................................................................................................................................................. ............................................................................................................................................................ L T Y E D K V Q I Y E L R K Q G E S F K R L S K R F G V D A S G L R Y M T R L I D R Y G I N I I K K G K N R Y Y S P K L K ................................................................................................................................................................. Subject: gi|15902795|ref|NP_358345.1| Degenerate transposase (orf1) [Streptococcus pneumoniae R6] HSP 1 e-value: 6.0E-9 bit: 57.0 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 70 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L S Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N F N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: UniRef90_Q8DQB8 Cluster: Degenerate transposase; n=4; Streptococcus pneumoniae|Rep: Degenerate transposase - Streptococcus pneumoniae (strain ATCC BAA-255 / R6) HSP 1 e-value: 6.0E-9 bit: 57.0 Len: 204 Query Start:136 Query End:339 Subject Strand: null Subject Start: 3 Subject End: 70 ....................................................................................................................................... L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I ................................................................................................................................................................. ....................................................................................................................................... L S Y D D K V Q I Y E L R K Q G Y S L E K L S N K F G I N N F N I R Y M I K L I D R Y G I E F V K K G K N R Y Y S P D L K Q E M I H K V ................................................................................................................................................................. Subject: gi|55822028|ref|YP_140469.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 1.0E-8 bit: 56.2 Len: 207 Query Start:43 Query End:249 Subject Strand: null Subject Start: 4 Subject End: 72 .......................................... S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ........................................................................................................................................................................................................................................................... .......................................... S G L K Y M V K L I D H Y G I N I I K K G K N R Y Y S P K L K R E M I D K V L L E G C S Q Q S V S L D Y C L S S G G M L P N W I A Q Y K K ........................................................................................................................................................................................................................................................... Subject: UniRef90_UPI000046E0D7 Cluster: IS861, transposase (orf1), IS3 family, truncated; n=3; Streptococcus thermophilus|Rep: IS861, transposase (orf1), IS3 family, truncated - Streptococcus thermophilus CNRZ1066 HSP 1 e-value: 1.0E-8 bit: 56.2 Len: 207 Query Start:43 Query End:249 Subject Strand: null Subject Start: 4 Subject End: 72 .......................................... S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ........................................................................................................................................................................................................................................................... .......................................... S G L K Y M V K L I D H Y G I N I I K K G K N R Y Y S P K L K R E M I D K V L L E G C S Q Q S V S L D Y C L S S G G M L P N W I A Q Y K K ........................................................................................................................................................................................................................................................... Subject: gi|28895759|ref|NP_802109.1| conserved hypothetical protein, IS861 associated [Streptococcus pyogenes SSI-1] HSP 1 e-value: 3.0E-8 bit: 54.7 Len: 210 Query Start:43 Query End:252 Subject Strand: null Subject Start: 3 Subject End: 72 .......................................... K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E ........................................................................................................................................................................................................................................................ .......................................... E S D L K Y M I R L I D R Y G V T I V Q K C K N N Y Y S P E L K Q E I I N K V L I D G Q S Q K Q T S L D Y A L P T S S M L S R W I A Q Y K K ........................................................................................................................................................................................................................................................ Subject: gi|55820119|ref|YP_138561.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus LMG 18311] HSP 1 e-value: 9.0E-8 bit: 53.1 Len: 162 Query Start:178 Query End:339 Subject Strand: null Subject Start: 29 Subject End: 82 ................................................................................................................................................................................. L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R ................................................................................................................................................................. ................................................................................................................................................................................. L T Y E D K V Q I Y E L R K Q G Q T F N K L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R ................................................................................................................................................................. Subject: UniRef90_UPI000046D9B5 Cluster: IS861, transposase (orf1), IS3 family, truncated; n=1; Streptococcus thermophilus LMG 18311|Rep: IS861, transposase (orf1), IS3 family, truncated - Streptococcus thermophilus LMG 18311 HSP 1 e-value: 9.0E-8 bit: 53.1 Len: 162 Query Start:178 Query End:339 Subject Strand: null Subject Start: 29 Subject End: 82 ................................................................................................................................................................................. L T R E D K I E I Y E R R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R ................................................................................................................................................................. ................................................................................................................................................................................. L T Y E D K V Q I Y E L R K Q G Q T F N K L S K R F G V D A S G L R Y M T R L I E R Y G I E I I K K G K H R ................................................................................................................................................................. Subject: IS|IS861.aa1 HSP 1 e-value: 1.0E-6 bit: 49.3 Len: 192 Query Start:43 Query End:234 Subject Strand: null Subject Start: 1 Subject End: 64 .......................................... L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L V S S V I L H N W L S K F K E .......................................................................................................................................................................................................................................................................... .......................................... M I K L M D R Y G V E I V E K G R N E Y Y P P E L K Q E M I D K V L I H G C S Q L S V S L D Y A L S N C S I L T N W L S Q F K K .......................................................................................................................................................................................................................................................................... Subject: gi|116628158|ref|YP_820777.1| Transposase [Streptococcus thermophilus LMD-9] HSP 1 e-value: 3.0E-6 bit: 48.1 Len: 186 Query Start:118 Query End:303 Subject Strand: null Subject Start: 2 Subject End: 63 ..................................................................................................................... R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S ..................................................................................................................................................................................................... ..................................................................................................................... R K Q G Q I F N Q L S K R F G V D A S G L K Y M T R L I E R Y G I E I I K K G K N C Y Y S P E L K Q E M I D K V L L E G R S ..................................................................................................................................................................................................... Subject: UniRef90_Q03JP1 Cluster: Transposase; n=3; Streptococcus thermophilus|Rep: Transposase - Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) HSP 1 e-value: 3.0E-6 bit: 48.1 Len: 186 Query Start:118 Query End:303 Subject Strand: null Subject Start: 2 Subject End: 63 ..................................................................................................................... R L K G E T T S S I A K S L N V R K S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S ..................................................................................................................................................................................................... ..................................................................................................................... R K Q G Q I F N Q L S K R F G V D A S G L K Y M T R L I E R Y G I E I I K K G K N C Y Y S P E L K Q E M I D K V L L E G R S ..................................................................................................................................................................................................... Subject: gi|55822736|ref|YP_141177.1| IS861, transposase (orf1), IS3 family, truncated [Streptococcus thermophilus CNRZ1066] HSP 1 e-value: 6.0E-6 bit: 47.0 Len: 162 Query Start:88 Query End:249 Subject Strand: null Subject Start: 4 Subject End: 57 ....................................................................................... S A I K Y L I S L I K K H G Y D I L R N G K N R I Y S K D F K L Q T I N R I L I N H K S I N Y V A I D I G L ........................................................................................................................................................................................................................................................... ....................................................................................... S G L K Y M V K L I D H Y G I N I I K K G K N R Y Y S P K L K R E M I D K V L L E G C S Q Q S V C L D Y G L ........................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: FN1681:FN1682|FN1681:FN1682:hypothetical protein:Heteropolysaccharide repeat unit export protein:<-<-:176653..177152 500 agaattagcttttttggtttatttctacaacatcatattcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 agaattagcttttttggtttatttctacaacatcatattcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 14 End: 109 ............. M V Y F Y N I I F I S L N F E S Q L C K I T E E T K P I S I A T ....................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 176 End: 346 ............................................................................................................................................................................... M L F L P F L K I S Y P C F L I K E I K Y L I A D L R T L R D F A I E L V V S P F N L L S Y I S I L S S L V N Y S .......................................................................................................................................................... Protein_Len: 36 Strand: + Start: 300 End: 407 ........................................................................................................................................................................................................................................................................................................... M F S H I F Q F Y L L L L I T H E K T A P P I L C P R F W V Q F N I L S ............................................................................................. Protein_Len: 33 Strand: + Start: 371 End: 469 .................................................................................................................................................................................................................................................................................................................................................................................. M S K I L G A V Q Y S I I R R L F L N I Y R L F S T L L L I P F I ............................... Protein_Len: 46 Strand: + Start: 346 End: 483 ......................................................................................................................................................................................................................................................................................................................................................... M K K L H L Q S C V Q D F G C S S I F Y H K K T I L K Y L Q T F F Y T L I D T I Y L N H I N ................. Protein_Len: 60 Strand: - Start: 28 End: 321 ........................... N I T Q L K F D K S Y I R N K G N R L I D Y G H K K I L S I L Y K I A S K R V N L S K A I S S T T E G K L R R E Y I E M ................................................................................................................................................................................... agaattagcttttttggtttatttctacaacatcatattcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ agaattagcttttttggtttatttctacaacatcatattcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 47 HP_score: -3.3 Tail_Score: -3.45027 Start: 217 End: 235 Full_Region: ATCATATCCATGTTT TTTAATT AAAGA AATTAAA TATTTAATAGCAGAT ........................................................................................................................................................................................................................TTTAATTAAAGAAATTAAA......................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 93 HP_score: -12.1 Tail_Score: -3.23183 Start: 355 End: 392 Full_Region: TTACTCATGAAAAAA CTGCACCTCCAATCTTG TGTC CAAGATTTTGGGTGCAG TTCAATATTCTATCA ..................................................................................................................................................................................................................................................................................................................................................................CTGCACCTCCAATCTTGTGTCCAAGATTTTGGGTGCAG............................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -9.9 Tail_Score: -5.1675 Start: 355 End: 392 Full_Region: tgatagaatattgaa ctgcacccaaaatcttg gaca caagattggaggtgcag ttttttcatgagtaa ..................................................................................................................................................................................................................................................................................................................................................................ctgcacccaaaatcttggacacaagattggaggtgcag............................................................................................................ Find igs database================================================ Query_seq: FN1681:FN1682|FN1681:FN1682:hypothetical protein:Heteropolysaccharide repeat unit export protein:<-<-:176653..177152 500 agaattagcttttttggtttatttctacaacatcatattcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta Intra-Species Hit: Count: 1 Min: 1 Max: 500 Len: 500 Subject: NC_003454_FN1681_FN1682|hypothetical protein:Heteropolysaccharide repeat unit export protein|NEGATIVE:NEGATIVE|[176653,177152]|500 HSP 1 e-value: 2.0E-73 bit: 278.0 Len: 140 Query Start:361 Query End:500 Subject Strand: POSITIVE Subject Start: 361 Subject End: 500 ........................................................................................................................................................................................................................................................................................................................................................................ctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta ........................................................................................................................................................................................................................................................................................................................................................................ctccaatcttgtgtccaagattttgggtgcagttcaatattctatcataagaagactattcttaaatatttacagacttttttctacactcttattgataccatttatttaaatcatattaattaaatattaagatacta HSP 2 e-value: 5.0E-15 bit: 83.8 Len: 42 Query Start:1 Query End:42 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 agaattagcttttttggtttatttctacaacatcatattcat.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... agaattagcttttttggtttatttctacaacatcatattcat.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGAAUUAGCUUUUUUGGUUUAUUUCUACAACAUCAUAUUCAUUUCUUUAAAUUUUGAAAGCCAAUUAUGUAAAAUAACAGAAGAAACUAAGCCAAUAUCAAUAGCAACAUAAUUAAUAGAUUUAUGAUUGAUUAAAAUUCUAUUAAUUGUUUGUAAUUUAAAAUCUUUGGAAUAAAUUCUAUUUUUACCGUUUCUUAAAAUAUCAUAUCCAUGUUUUUUAAUUAAAGAAAUUAAAUAUUUAAUAGCAGAUUUGCGAACAUUAAGAGAUUUUGCUAUUGAACUAGUGGUUUCACCCUUUAAUCUUCUCUCAUAUAUUUCAAUUUUAUCUUCUCUUGUUAAUUACUCAUGAAAAAACUGCACCUCCAAUCUUGUGUCCAAGAUUUUGGGUGCAGUUCAAUAUUCUAUCAUAAGAAGACUAUUCUUAAAUAUUUACAGACUUUUUUCUACACUCUUAUUGAUACCAUUUAUUUAAAUCAUAUUAAUUAAAUAUUAAGAUACUA ..((((.((((((..((((((..........................))))))..)))))).))))..(((((((((.((((((...................((((.((((((((((((.((.(((....))).)).))))))))))))))))............((((((((....................((((((...(((....)))..)))))).....(((((((....((((((((((((.(..(.........)..).))))))))))))....))))))).....................)))))))).....)))))).)))))..)))).........((((((((((..(((((((....)))))))..))))))))))........((((.((((((.....))))))((((((((.(((......)))........(((((((..((((....))))..)))))))))))))))..))))... (-87.07) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUAUCUUAAUAUUUAAUUAAUAUGAUUUAAAUAAAUGGUAUCAAUAAGAGUGUAGAAAAAAGUCUGUAAAUAUUUAAGAAUAGUCUUCUUAUGAUAGAAUAUUGAACUGCACCCAAAAUCUUGGACACAAGAUUGGAGGUGCAGUUUUUUCAUGAGUAAUUAACAAGAGAAGAUAAAAUUGAAAUAUAUGAGAGAAGAUUAAAGGGUGAAACCACUAGUUCAAUAGCAAAAUCUCUUAAUGUUCGCAAAUCUGCUAUUAAAUAUUUAAUUUCUUUAAUUAAAAAACAUGGAUAUGAUAUUUUAAGAAACGGUAAAAAUAGAAUUUAUUCCAAAGAUUUUAAAUUACAAACAAUUAAUAGAAUUUUAAUCAAUCAUAAAUCUAUUAAUUAUGUUGCUAUUGAUAUUGGCUUAGUUUCUUCUGUUAUUUUACAUAAUUGGCUUUCAAAAUUUAAAGAAAUGAAUAUGAUGUUGUAGAAAUAAACCAAAAAAGCUAAUUCU ((((.((((((((((((....((((.((((....)))).)))).....(((.(.........).))).)))))).))))))...((((((((.((...(((....((((((((((...(((((((....)))))))...)))))))))).))).(((....))).)).))))))))....(((.(((((.(((((((.........((((....)))).((......))....))))))))))))..))).(((((.((...(((((((.(((((((((.........(((...((((((....(((((((.((((...((((((((.......))))))))..))))....((((((((((..((((........)))))))))))))).....((((.......))))...))))))).))))))....)))..(((.....)))...))))))))))))))))...)).)))))..............))))..... (-97.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 847 398 351 141 94 NC_003454:FN1887|5end_Transposase_371671..371901_POSITIVE 840 390 341 134 85 NC_003454:FN1443|5end_Transposase_2111518..2111748_NEGATIVE 840 390 341 134 85 NC_003454:FN0786|5end_Transposase_1442465..1442695_POSITIVE 840 390 341 134 85 NC_003454:FN0135|5end_Transposase_770238..770468_POSITIVE 837 397 351 139 93 NC_003454:FN0485|5end_Transposase_1130267..1130497_POSITIVE 828 396 351 138 93 NC_003454:FN0840|5end_Transposase_1501361..1501591_POSITIVE 828 396 351 225 180 NC_003454:FN1972|5end_hypothetical_protein_472071..472301_NEGATIVE 825 396 351 127 82 NC_003454:FN1446|5end_Transposase_2116033..2116263_POSITIVE 742 110 61 201 152 NC_003454:FN1681|5end_hypothetical_protein_176562..176792_NEGATIVE 600 394 354 209 170 NC_003454:FN0210|5end_Transcriptional_regulator,_COPG_family_836998..837228_POSITIVE 536 220 171 231 182 NC_003454:FN0136|5end_Transposase_770506..770736_POSITIVE 404 375 344 231 200 NC_003454:FN0234|5end_hypothetical_protein_859499..859729_NEGATIVE 386 394 353 202 161 NC_003454:FN1444|5end_GMP_synthase_[glutamine-hydrolyzing]_2111585..2111815_POSITIVE 386 394 353 72 31 NC_003454:FN0839|5end_hypothetical_protein_1501426..1501656_NEGATIVE 272 388 343 101 44 NC_003454:FN1236|5end_Choline_transport_protein_1893480..1893710_NEGATIVE 259 63 21 48 3 NC_003454:FN1736|5end_V-type_sodium_ATP_synthase_subunit_A_236021..236251_NEGATIVE 250 340 294 188 132 NC_003454:FN1012|5end_HPr_kinase/phosphorylase_1667527..1667757_NEGATIVE 245 45 1 175 131 NC_003454:FN0453|5end_Xaa-Pro_aminopeptidase_1097547..1097777_POSITIVE 238 330 287 161 119 NC_003454:FN0459|5end_Hypothetical_exported_24-amino_acid_repeat_protein_1104609..1104839_POSITIVE 235 424 385 197 147 NC_003454:FN1842|5end_Dihydroxyacetone_kinase_phosphotransfer_protein_331491..331721_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 847 398 351 144 97 NC_003454:FN1886|3end_hypothetical_protein_371754..371904_POSITIVE 837 397 351 64 18 NC_003454:FN0484|3end_Lipase_1130272..1130422_POSITIVE 828 396 351 66 21 NC_003454:FN1973|3end_Translation_initiation_inhibitor_472230..472380_NEGATIVE 810 396 353 77 34 NC_003454:FN0235|3end_ABC_transporter_ATP-binding_protein_859674..859824_NEGATIVE 777 396 351 86 41 NC_003454:FN1905|3end_168_kDa_surface-layer_protein_precursor_393653..393803_NEGATIVE 760 397 351 79 33 NC_003454:FN1547|3end_PTS_permease_for_N-acetylglucosamine_and_glucose_61801..61951_NEGATIVE 741 395 353 82 40 NC_003454:FN1464|3end_1-deoxy-D-xylulose-5-phosphate_synthase_2145954..2146104_NEGATIVE 630 397 354 84 41 NC_003454:FN1221|3end_hypothetical_protein_1881290..1881440_POSITIVE 597 395 352 87 44 NC_003454:FN1500|3end_Nickel_transport_ATP-binding_protein_nikE_5193..5343_NEGATIVE 472 108 63 138 93 NC_003454:FN0135|3end_Transposase_770605..770755_POSITIVE 458 395 353 83 41 NC_003454:FN1463|3end_pyridoxine_biosynthesis_protein_2145924..2146074_POSITIVE 448 394 352 84 42 NC_003454:FN1545|3end_Ferredoxin_like_protein_59497..59647_POSITIVE 390 394 351 70 28 NC_003454:FN0178|3end_UNC-44_ankyrins_802390..802540_NEGATIVE 378 396 353 46 3 NC_003454:FN1019|3end_3-hydroxybutyryl-CoA_dehydrogenase_1672945..1673095_NEGATIVE 377 394 354 89 49 NC_003454:FN1904|3end_Transcriptional_regulator,_MarR_family_393633..393783_POSITIVE 377 396 352 80 36 NC_003454:FN1498|3end_Integral_membrane_protein_3542..3692_POSITIVE 369 394 351 77 34 NC_003454:FN1546|3end_translation_elongation_factor_EF-G_59529..59679_NEGATIVE 359 394 354 71 38 NC_003454:FN0435|3end_Purine_nucleoside_phosphorylase_1077821..1077971_POSITIVE 355 394 351 71 28 NC_003454:FN1144|3end_hypothetical_protein_1793403..1793553_NEGATIVE 317 394 352 84 42 NC_003454:FN1143|3end_glucosamine-6-phosphate_deaminase_1793365..1793515_POSITIVE