Origin IGS: atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 actatcacctcaaattaattatatcacagttataacttacaaaaaagtaaattttaatatttttatcagttataactgataaaaatattaaatatgattagaaataaaaaataaaaaataaattaaacttgcaaactgttacagtaatgtagcagttttttaattttgctaagtataaaattttataaaattaagaaaatatctgttataaaatataaaaatgtactgaatttgcctttataatttaaaaatcattcaaaataataattttttcttgacaatataaataatttataatattattgtacacgggtgcatattgcttaatagaggaagaagagtgaaaatctctcacagcgaaagctactgtaatgtggatgaaatcataataaaccactgggcaactgggaaggtatgaaagtaaggtgaagcaaagtcaggagacttaccattatattaatatttatatatattgtcataatatataatattttttatgtgtaaaaattctaattaagttaaaaatgctgattagagttttttttattttataaaaataaattaaactataaatttataattttagaaaggggatgtttatgagaaaaatattttggaaggtgactttgttatcatgtttaatttcactttttgcatatggagggtggaatgagttaggtgaaggagaaaaggtcgagaaaactctagatgaaaatgggaaagtaacaacagttaagaaattaatattaggaaaaaattcaaat Mask Tandem Repeat Region ================================================ atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Find is-nt database================================================ Query_seq: FN1381:FN1382|FN1381:FN1382:hypothetical protein:ATPase:<-->:2032525..2033288 764 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1381:FN1382|FN1381:FN1382:hypothetical protein:ATPase:<-->:2032525..2033288 764 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1381:FN1382|FN1381:FN1382:hypothetical protein:ATPase:<-->:2032525..2033288 764 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 33 End: 164 ................................ M L L L S H F H L E F S R P F L L H L T H S T L H M Q K V K L N M I T K S P S K I F F S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 56 Strand: + Start: 20 End: 187 ................... M N F L T V V T F P F S S R V F S T F S P S P N S F H P P Y A K S E I K H D N K V T F Q N I F L I N I P F L K L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 191 End: 286 .............................................................................................................................................................................................. M Y S L I Y F Y K I K K T L I S I F N L I R I F T H K K Y Y I L .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 35 Strand: + Start: 274 End: 378 ................................................................................................................................................................................................................................................................................. M L Y I M T I Y I N I N I M V S L L T L L H L T F I P S Q L P S G L L .................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 50 Strand: + Start: 368 End: 517 ............................................................................................................................................................................................................................................................................................................................................................................... M V Y Y D F I H I T V A F A V R D F H S S S S I K Q Y A P V Y N N I I N Y L Y C Q E K I I I L N D F ....................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 350 End: 478 ............................................................................................................................................................................................................................................................................................................................................................. V K G T A W H N I I I E D V N C Y S E S H S I K V R R G R N L L I C G H V I I N Y I M .............................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 192 G L I L K K V T T V K G N E D L T K E V K E G E G L E N W G G Y A F L S I L C S L L T V K W F I K R M F M G K R F N Y M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 90 Start: 462 End: 491 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACAATATAAATAATTTATAATATTAT................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 285 End: 314 ............................................................................................................................................................................................................................................................................................TATGACAATATATATAAATATTAATATAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 353 End: 382 ................................................................................................................................................................................................................................................................................................................................................................CTTCCCAGTTGCCCAGTGGTTTATTATGAT.............................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 93 HP_score: -7.2 Tail_Score: -5.48054 Start: 610 End: 629 Full_Region: aattaaacttgcaaa ctgttaca gtaa tgtagcag ttttttaattttgct .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgttacagtaatgtagcag....................................................................................................................................... TransTerm Strand: + Conf: 76 HP_score: -4.8 Tail_Score: -5.3236 Start: 667 End: 718 Full_Region: TATTTTTTATTTCTA ATCATATTTAATATTTTTATCAGT TATA ACTGATAAAAATATTAAAATTTAC TTTTTTGTAAGTTAT ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATATTTAATATTTTTATCAGTTATAACTGATAAAAATATTAAAATTTAC.............................................. TransTerm Strand: + Conf: 100 HP_score: -13.5 Tail_Score: -4.47686 Start: 672 End: 713 Full_Region: TTTATTTCTAATCAT ATTTAATATTTTTATCAGT TATA ACTGATAAAAATATTAAAA TTTACTTTTTTGTAA ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATATTTTTATCAGTTATAACTGATAAAAATATTAAAA................................................... TransTerm Strand: - Conf: 100 HP_score: -17.0 Tail_Score: -2.90723 Start: 673 End: 712 Full_Region: tacaaaaaagtaaat tttaatatttttatcagt tata actgataaaaatattaaa tatgattagaaataa ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttaatatttttatcagttataactgataaaaatattaaa.................................................... TransTerm Strand: + Conf: 100 HP_score: -17.0 Tail_Score: -3.26985 Start: 673 End: 712 Full_Region: TTATTTCTAATCATA TTTAATATTTTTATCAGT TATA ACTGATAAAAATATTAAA ATTTACTTTTTTGTA ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATTTTTATCAGTTATAACTGATAAAAATATTAAA.................................................... TransTerm Strand: - Conf: 91 HP_score: -12.5 Tail_Score: -3.16267 Start: 678 End: 707 Full_Region: aaaagtaaattttaa tatttttatcagt tata actgataaaaata ttaaatatgattaga .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttttatcagttataactgataaaaata......................................................... Find igs database================================================ Query_seq: FN1381:FN1382|FN1381:FN1382:hypothetical protein:ATPase:<-->:2032525..2033288 764 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacacataaaaaatattatatattatgacaatatatataaatattaatataatggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtacaataatattataaattatttatattgtcaagaaaaaattattattttgaatgatttttaaattataaaggcaaattcagtacatttttatattttataacagatattttcttaattttataaaattttatacttagcaaaattaaaaaactgctacattactgtaacagtttgcaagtttaatttattttttattttttatttctaatcatatttaatatttttatcagttataactgataaaaatattaaaatttacttttttgtaagttataactgtgatataattaatttgaggtgatagt Intra-Species Hit: Count: 1 Min: 1 Max: 764 Len: 764 Subject: NC_003454_FN1381_FN1382|hypothetical protein:ATPase|NEGATIVE:POSITIVE|[2032525,2033288]|764 HSP 1 e-value: 1.0E-134 bit: 480.0 Len: 266 Query Start:1 Query End:266 Subject Strand: POSITIVE Subject Start: 1 Subject End: 266 atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaatnnnnnnnnctctaatcagcatttttaacttaattagaatttttacac.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. atttgaattttttcctaatattaatttcttaactgttgttactttcccattttcatctagagttttctcgaccttttctccttcacctaactcattccaccctccatatgcaaaaagtgaaattaaacatgataacaaagtcaccttccaaaatatttttctcataaacatcccctttctaaaattataaatttatagtttaatttatttttataaaataaaaaaaactctaatcagcatttttaacttaattagaatttttacac.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-77 bit: 289.0 Len: 146 Query Start:315 Query End:460 Subject Strand: POSITIVE Subject Start: 315 Subject End: 460 ..........................................................................................................................................................................................................................................................................................................................ggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtac................................................................................................................................................................................................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................ggtaagtctcctgactttgcttcaccttactttcataccttcccagttgcccagtggtttattatgatttcatccacattacagtagctttcgctgtgagagattttcactcttcttcctctattaagcaatatgcacccgtgtac................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 9.0E-18 bit: 93.7 Len: 47 Query Start:718 Query End:764 Subject Strand: POSITIVE Subject Start: 718 Subject End: 764 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttttgtaagttataactgtgatataattaatttgaggtgatagt .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttttttgtaagttataactgtgatataattaatttgaggtgatagt HSP 4 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:610 Query End:637 Subject Strand: POSITIVE Subject Start: 610 Subject End: 637 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgctacattactgtaacagtttgcaag............................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctgctacattactgtaacagtttgcaag............................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUGAAUUUUUUCCUAAUAUUAAUUUCUUAACUGUUGUUACUUUCCCAUUUUCAUCUAGAGUUUUCUCGACCUUUUCUCCUUCACCUAACUCAUUCCACCCUCCAUAUGCAAAAAGUGAAAUUAAACAUGAUAACAAAGUCACCUUCCAAAAUAUUUUUCUCAUAAACAUCCCCUUUCUAAAAUUAUAAAUUUAUAGUUUAAUUUAUUUUUAUAAAAUAAAAAAAACUCUAAUCAGCAUUUUUAACUUAAUUAGAAUUUUUACACAUAAAAAAUAUUAUAUAUUAUGACAAUAUAUAUAAAUAUUAAUAUAAUGGUAAGUCUCCUGACUUUGCUUCACCUUACUUUCAUACCUUCCCAGUUGCCCAGUGGUUUAUUAUGAUUUCAUCCACAUUACAGUAGCUUUCGCUGUGAGAGAUUUUCACUCUUCUUCCUCUAUUAAGCAAUAUGCACCCGUGUACAAUAAUAUUAUAAAUUAUUUAUAUUGUCAAGAAAAAAUUAUUAUUUUGAAUGAUUUUUAAAUUAUAAAGGCAAAUUCAGUACAUUUUUAUAUUUUAUAACAGAUAUUUUCUUAAUUUUAUAAAAUUUUAUACUUAGCAAAAUUAAAAAACUGCUACAUUACUGUAACAGUUUGCAAGUUUAAUUUAUUUUUUAUUUUUUAUUUCUAAUCAUAUUUAAUAUUUUUAUCAGUUAUAACUGAUAAAAAUAUUAAAAUUUACUUUUUUGUAAGUUAUAACUGUGAUAUAAUUAAUUUGAGGUGAUAGU .................................((((((((..................(((....)))............(((((......(((............)))......)))))........))))))))..(((((((..((((.((.((...(((((..........................(((.(((((..(((((((.....)))))))..))))).)))..........(((((((.((((((.........((((((((((..........((((((((((.((((....((((((...((((((((....))).))))).(((....((((((((.(.....((((((...((((......(((....)))))))......))))))...).)))))))).........................((.....))....))).......))))))....)))).))))))))))....(((((((((......)))))))))(((((((.....((((((((((((.........(((((((((.(((.....))).....)))))))))........(((((............)))))...)))))....))))))).....))))))).....)))))))))))))))).....((((((((((((((((((....)))))))))))))))))).............)))))))....)))))...)).)).)))))))))))... (-119.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUAUCACCUCAAAUUAAUUAUAUCACAGUUAUAACUUACAAAAAAGUAAAUUUUAAUAUUUUUAUCAGUUAUAACUGAUAAAAAUAUUAAAUAUGAUUAGAAAUAAAAAAUAAAAAAUAAAUUAAACUUGCAAACUGUUACAGUAAUGUAGCAGUUUUUUAAUUUUGCUAAGUAUAAAAUUUUAUAAAAUUAAGAAAAUAUCUGUUAUAAAAUAUAAAAAUGUACUGAAUUUGCCUUUAUAAUUUAAAAAUCAUUCAAAAUAAUAAUUUUUUCUUGACAAUAUAAAUAAUUUAUAAUAUUAUUGUACACGGGUGCAUAUUGCUUAAUAGAGGAAGAAGAGUGAAAAUCUCUCACAGCGAAAGCUACUGUAAUGUGGAUGAAAUCAUAAUAAACCACUGGGCAACUGGGAAGGUAUGAAAGUAAGGUGAAGCAAAGUCAGGAGACUUACCAUUAUAUUAAUAUUUAUAUAUAUUGUCAUAAUAUAUAAUAUUUUUUAUGUGUAAAAAUUCUAAUUAAGUUAAAAAUGCUGAUUAGAGUUUUUUUUAUUUUAUAAAAAUAAAUUAAACUAUAAAUUUAUAAUUUUAGAAAGGGGAUGUUUAUGAGAAAAAUAUUUUGGAAGGUGACUUUGUUAUCAUGUUUAAUUUCACUUUUUGCAUAUGGAGGGUGGAAUGAGUUAGGUGAAGGAGAAAAGGUCGAGAAAACUCUAGAUGAAAAUGGGAAAGUAACAACAGUUAAGAAAUUAAUAUUAGGAAAAAAUUCAAAU (((.((.((.((((((...(((((.....(((((.(((((((((..((((..((((((((((((((((((....)))))))))))))))))).....(((....))).....................)))).((((((((((....))))))))))......))))).))))))))).(((((((((.....(((.....))).)))))))))......)))))...))))))(((((((...((((...((((((..........(((((((((.....(((((.....))))).......(((((....)))))............)))))))))..........(((((..(((....)))......(((..((..............(((.(..(....)..)...))).(((((..((.((((((((((((((.....(((.(((..(((((....((((((.(((((.((...((((((((......))))))))((((((((((((((.((.......))))))))))))))))....(((((.....(((((((........))))))).....))))).)).))))).))))))...)))))..)))))).)))))))))).)))).))...)))))...))..)))...)))))..)))))).))))))))))).......(((.(((....))).)))......)))).))).......(((((....)))))................... (-156.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 916 110 61 201 152 NC_003454:FN1381|5end_hypothetical_protein_2032434..2032664_NEGATIVE 616 360 311 228 179 NC_003454:FN1971|5end_Hemin_receptor_471106..471336_NEGATIVE 329 100 57 222 186 NC_003454:FN1426|5end_Serine_protease_2095462..2095692_NEGATIVE 300 338 311 65 35 NC_003454:FN0644|5end_UROPORPHYRINOGEN-III_SYNTHASE_1301344..1301574_NEGATIVE 299 88 42 177 118 NC_003454:FN1126|5end_Acetyltransferase_1770287..1770517_NEGATIVE 296 95 53 168 123 NC_003454:FN1318|5end_RNA_polymerase_sigma_factor_rpoD_1972096..1972326_NEGATIVE 293 430 394 187 136 NC_003454:FN1379|5end_Citrate_lyase_beta_chain_2026355..2026585_POSITIVE 293 390 343 211 157 NC_003454:FN1051|5end_hypothetical_protein_1699781..1700011_POSITIVE 283 436 395 102 58 NC_003454:FN0581|5end_Lipoprotein_releasing_system_transmembrane_protein_lolE_1237108..1237338_POSITIVE 281 79 39 99 54 NC_003454:FN1431|5end_Branched-chain_amino_acid_transport_system_permease_protein_livH_2100252..2100482_NEGATIVE 280 107 74 112 80 NC_003454:FN0257|5end_Transporter_882516..882746_POSITIVE 278 369 321 220 171 NC_003454:FN1229|5end_hypothetical_protein_1886700..1886930_NEGATIVE 277 101 66 31 3 NC_003454:FN0664|5end_2-nitropropane_dioxygenase_1319758..1319988_POSITIVE 274 358 312 100 54 NC_003454:FN0853|5end_Glycogen_synthase_1512307..1512537_NEGATIVE 271 358 314 187 131 NC_003454:FN1210|5end_Metal_dependent_hydrolase_1870766..1870996_NEGATIVE 270 370 328 170 120 NC_003454:FN1089|5end_hypothetical_protein_1733042..1733272_POSITIVE 263 672 631 131 86 NC_003454:FN0677|5end_hypothetical_protein_1332641..1332871_POSITIVE 262 397 359 219 186 NC_003454:FN1917|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase_413756..413986_NEGATIVE 262 130 95 91 52 NC_003454:FN1886|5end_hypothetical_protein_371399..371629_POSITIVE 261 85 48 84 43 NC_003454:FN0462|5end_DNA_mismatch_repair_protein_mutL_1107184..1107414_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 300 338 311 41 11 NC_003454:FN0645|3end_Porphobilinogen_deaminase_1301368..1301518_NEGATIVE 283 436 395 98 54 NC_003454:FN0580|3end_Penicillin-binding_protein_1237184..1237334_POSITIVE 274 358 312 83 37 NC_003454:FN0854|3end_Glucose-1-phosphate_adenylyltransferase_1512324..1512474_NEGATIVE 270 370 328 143 93 NC_003454:FN1088|3end_NADH_oxidase_1733095..1733245_POSITIVE 260 82 41 85 41 NC_003454:FN1726|3end_Na+_driven_multidrug_efflux_pump_224686..224836_NEGATIVE 257 88 41 61 11 NC_003454:FN0196|3end_Transcriptional_regulator,_FUR_family_822747..822897_POSITIVE 255 359 321 73 25 NC_003454:FN0367|3end_Integral_membrane_protein_996383..996533_NEGATIVE 252 119 71 146 81 NC_003454:FN0589|3end_Transcriptional_regulator,_MarR_family_1242833..1242983_POSITIVE 246 357 313 86 28 NC_003454:FN0241|3end_Dihydrofolate_reductase_865295..865445_POSITIVE 239 379 333 83 31 NC_003454:FN0752|3end_Proline_iminopeptidase_1410721..1410871_NEGATIVE 239 360 316 94 39 NC_003454:FN0596|3end_hypothetical_protein_1250884..1251034_POSITIVE 238 439 391 90 38 NC_003454:FN1206|3end_Hemolysin_1865213..1865363_NEGATIVE 237 119 78 73 36 NC_003454:FN1026|3end_tRNA_pseudouridine_synthase_A_1679954..1680104_NEGATIVE 237 437 391 110 61 NC_003454:FN0548|3end_Regulatory_protein_recX_1201409..1201559_POSITIVE 237 459 413 65 12 NC_003454:FN1505|3end_6,7-dimethyl-8-ribityllumazine_synthase_10949..11099_POSITIVE 236 374 343 149 101 NC_003454:FN1859|3end_Major_outer_membrane_protein_348549..348699_NEGATIVE 235 360 314 131 92 NC_003454:FN1127|3end_Hypothetical_membrane-spanning_protein_1770307..1770457_NEGATIVE 233 90 44 98 49 NC_003454:FN1455|3end_UDP-N-acetylenolpyruvoylglucosamine_reductase_2135674..2135824_NEGATIVE 233 677 631 116 76 NC_003454:FN2031|3end_Thiamine_biosynthesis_lipoprotein_apbE_536121..536271_NEGATIVE 233 439 396 148 108 NC_003454:FN1621|3end_elongation_factor_Ts_129655..129805_POSITIVE