Origin IGS: ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtgtatggaaaattatgttaatttaatttgcactgctattttagccattacttctgtagttaatgtcttgcttcttttatactagattaattctaatagacaagatgaggctaaaaaattttggtataaagtaagtataaattcagatgatctttctaactgtacaggctattttaatagaattatatccataattgaaaacaatcagaagagaaacgacaagctcctagcatataaagatgagtttaaaaacataagaaatttcttttctaaaactatattttttgatgaagacatgaaaaataaacttgatgaatttatttatgaatgtgaacaagagtgtatgatcaatgataatataaaaaagaagatataaatcatatgttatggattatactgaaatcattatatagctttgaattgaattcatataaagattttaatataaaatataatttacaaaaataaagcaggattagttttctgctttttacattataatttttttaaaaaagtgttatctaacatccgttatatttgaattaatctaaattagattgaatttggtgtaaacaaagtgcaaacaaaaaaagtataagaatacaaaaaagccctcaacttttttcaagttcgggcttttttgtagaaattaaactataattaaggaaacgatacaagataaatataacattatttatttagtttgtcaacaactttttataaaaaattactatttttgcatttttatattggaatcaaaagaaaaaaatatatttgaaaattaaaattttttataatttgatttttgttaatgctaattaaaaaaatttttttaaatataaaaaaattaataatataatttgcattagaagactattcatgttatacttttctatatatttacttaatttattaggaggagaa Mask Tandem Repeat Region ================================================ ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Find is-nt database================================================ Query_seq: FN1335:FN1336|FN1335:FN1336:Protein translocase subunit YajC:hypothetical protein:<-<-:1989102..1990025 924 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1335:FN1336|FN1335:FN1336:Protein translocase subunit YajC:hypothetical protein:<-<-:1989102..1990025 924 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1335:FN1336|FN1335:FN1336:Protein translocase subunit YajC:hypothetical protein:<-<-:1989102..1990025 924 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 70 End: 177 ..................................................................... M I N F F I F K K I F L I S I N K N Q I I K N F N F Q I Y F F L L I P I ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 449 End: 544 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L L Y F C K L Y F I L K S L Y E F N S K L Y N D F S I I H N I ............................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 53 Strand: + Start: 537 End: 695 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M T Y D L Y L L F Y I I I D H T L L F T F I N K F I K F I F H V F I K K Y S F R K E I S Y V F K L I F I C ..................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 604 End: 717 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N S S S L F F M S S S K N I V L E K K F L M F L N S S L Y A R S L S F L F ............................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 552 End: 839 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F N R I N K F E D K Y A L L K D N R K Q N N E I I S I I R N F Y G T C N S L D D S N I S V K Y W F K K A E D Q R N S N M ..................................................................................... Protein_Len: 31 Strand: - Start: 460 End: 552 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K Q L N Y K I N F D K Y S N L E F S Y L S K L I I W L M H N M .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 268 End: 363 ........................................................................................................................................................................................................................................................................... L K I E V F F G S S S F L Q P S K Q I R I S K K N A S Q K C W M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 143 End: 268 .............................................................................................................................................. N E F I N K E K S E L I F I C F Y Y N K I F L Q Q C V L Y I I N Y K D Q I T E K I M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: - Start: 106 End: 198 ......................................................................................................... N A N V F I L N Y F I K I K L Y I K K K Q N W Y L F A F I T M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 90 Start: 214 End: 243 .....................................................................................................................................................................................................................GTTGACAAACTAAATAAATAATGTTATATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 65 End: 94 ................................................................TTTTAAATATAAAAAAATTAATAATATAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 36 End: 65 ...................................TTTGCATTAGAAGACTATTCATGTTATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 714 End: 743 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGATTGTTTTCAATTATGGATATAAT..................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 351 End: 380 ..............................................................................................................................................................................................................................................................................................................................................................GTTTACACCAAATTCAATCTAATTTAGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 81 HP_score: -5.2 Tail_Score: -5.63103 Start: 78 End: 97 Full_Region: AAATTATATTATTAA TTTTTTTA TATT TAAAAAAA TTTTTTTAATTAGCA .............................................................................TTTTTTTATATTTAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 68 HP_score: -2.6 Tail_Score: -5.55695 Start: 289 End: 314 Full_Region: AATTTCTACAAAAAA GCCCGAACTT GAAAA AAGTTGAGGGC TTTTTTGTATTCTTA ................................................................................................................................................................................................................................................................................................GCCCGAACTTGAAAAAAGTTGAGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 62 HP_score: -2.6 Tail_Score: -5.25803 Start: 289 End: 314 Full_Region: taagaatacaaaaaa gccctcaactt ttttc aagttcgggc ttttttgtagaaatt ................................................................................................................................................................................................................................................................................................gccctcaacttttttcaagttcgggc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 45 HP_score: -2.7 Tail_Score: -3.74397 Start: 290 End: 312 Full_Region: agaatacaaaaaagc cctcaactt ttttc aagttcggg cttttttgtagaaat .................................................................................................................................................................................................................................................................................................cctcaacttttttcaagttcggg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 75 HP_score: -3.0 Tail_Score: -5.95539 Start: 321 End: 332 Full_Region: GTTGAGGGCTTTTTT GTAT TCTT ATAC TTTTTTTGTTTGCAC ................................................................................................................................................................................................................................................................................................................................GTATTCTTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 61 HP_score: -3.4 Tail_Score: -4.78752 Start: 438 End: 455 Full_Region: atttacaaaaataaa gcagga ttagtt ttctgc tttttacattataat .....................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaggattagttttctgc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: FN1335:FN1336|FN1335:FN1336:Protein translocase subunit YajC:hypothetical protein:<-<-:1989102..1990025 924 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgcaaattatattattaatttttttatatttaaaaaaatttttttaattagcattaacaaaaatcaaattataaaaaattttaattttcaaatatatttttttcttttgattccaatataaaaatgcaaaaatagtaattttttataaaaagttgttgacaaactaaataaataatgttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac Intra-Species Hit: Count: 1 Min: 1 Max: 924 Len: 924 Subject: NC_003454_FN1335_FN1336|Protein translocase subunit YajC:hypothetical protein|NEGATIVE:NEGATIVE|[1989102,1990025]|924 HSP 1 e-value: 0.0 bit: 1283.0 Len: 689 Query Start:236 Query End:924 Subject Strand: POSITIVE Subject Start: 236 Subject End: 924 ...........................................................................................................................................................................................................................................gttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatacnnnnnnngtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttnnnnnnnttataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac ...........................................................................................................................................................................................................................................gttatatttatcttgtatcgtttccttaattatagtttaatttctacaaaaaagcccgaacttgaaaaaagttgagggcttttttgtattcttatactttttttgtttgcactttgtttacaccaaattcaatctaatttagattaattcaaatataacggatgttagataacacttttttaaaaaaattataatgtaaaaagcagaaaactaatcctgctttatttttgtaaattatattttatattaaaatctttatatgaattcaattcaaagctatataatgatttcagtataatccataacatatgatttatatcttcttttttatattatcattgatcatacactcttgttcacattcataaataaattcatcaagtttatttttcatgtcttcatcaaaaaatatagttttagaaaagaaatttcttatgtttttaaactcatctttatatgctaggagcttgtcgtttctcttctgattgttttcaattatggatataattctattaaaatagcctgtacagttagaaagatcatctgaatttatacttactttataccaaaattttttagcctcatcttgtctattagaattaatctagtataaaagaagcaagacattaactacagaagtaatggctaaaatagcagtgcaaattaaattaacataattttccatacac HSP 2 e-value: 1.0E-26 bit: 123.0 Len: 62 Query Start:1 Query End:62 Subject Strand: POSITIVE Subject Start: 1 Subject End: 62 ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttctcctcctaataaattaagtaaatatatagaaaagtataacatgaatagtcttctaatgc.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUCCUCCUAAUAAAUUAAGUAAAUAUAUAGAAAAGUAUAACAUGAAUAGUCUUCUAAUGCAAAUUAUAUUAUUAAUUUUUUUAUAUUUAAAAAAAUUUUUUUAAUUAGCAUUAACAAAAAUCAAAUUAUAAAAAAUUUUAAUUUUCAAAUAUAUUUUUUUCUUUUGAUUCCAAUAUAAAAAUGCAAAAAUAGUAAUUUUUUAUAAAAAGUUGUUGACAAACUAAAUAAAUAAUGUUAUAUUUAUCUUGUAUCGUUUCCUUAAUUAUAGUUUAAUUUCUACAAAAAAGCCCGAACUUGAAAAAAGUUGAGGGCUUUUUUGUAUUCUUAUACUUUUUUUGUUUGCACUUUGUUUACACCAAAUUCAAUCUAAUUUAGAUUAAUUCAAAUAUAACGGAUGUUAGAUAACACUUUUUUAAAAAAAUUAUAAUGUAAAAAGCAGAAAACUAAUCCUGCUUUAUUUUUGUAAAUUAUAUUUUAUAUUAAAAUCUUUAUAUGAAUUCAAUUCAAAGCUAUAUAAUGAUUUCAGUAUAAUCCAUAACAUAUGAUUUAUAUCUUCUUUUUUAUAUUAUCAUUGAUCAUACACUCUUGUUCACAUUCAUAAAUAAAUUCAUCAAGUUUAUUUUUCAUGUCUUCAUCAAAAAAUAUAGUUUUAGAAAAGAAAUUUCUUAUGUUUUUAAACUCAUCUUUAUAUGCUAGGAGCUUGUCGUUUCUCUUCUGAUUGUUUUCAAUUAUGGAUAUAAUUCUAUUAAAAUAGCCUGUACAGUUAGAAAGAUCAUCUGAAUUUAUACUUACUUUAUACCAAAAUUUUUUAGCCUCAUCUUGUCUAUUAGAAUUAAUCUAGUAUAAAAGAAGCAAGACAUUAACUACAGAAGUAAUGGCUAAAAUAGCAGUGCAAAUUAAAUUAACAUAAUUUUCCAUACAC ..............(((((((.(((((((((((.(((((((((((...........((((((.(((((....(..((((((((((....))))))))))..).))))).))))))............(((((((((((((((.((((((..((((((....((....))....))))))....)).)))).))).))))))))))))..((((.......)))).........))))))))))).)).))))).)))).))))))).(((((((.....(((((((((((((.(((((.....)))))..)))))))))))))................(((((((((((((((...(((.....((((((...)))))).............((((((...(((((..(((((((((((.(((.((((((((((((((((..........))))))).....((((((((((((.(((((((.(((((.(((((((..((.......))..))))))).))))).)))))))........)))))))))))).........))))))))).))).............((...((((....(((((((((.....)))))))))...))))...)).............)))))))))))....((((((.((...((((......))))...)))))))).)))))...(((.((((((((((...((.((((.((((......))))...))))..)).))))))))))))).))))))..........((((((.......(((.((((.((....((((...(((((((.....)))))))...)))).)))))).))).......)))))).)))...)))))).)))))))))))))))).................. (-163.54) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGUAUGGAAAAUUAUGUUAAUUUAAUUUGCACUGCUAUUUUAGCCAUUACUUCUGUAGUUAAUGUCUUGCUUCUUUUAUACUAGAUUAAUUCUAAUAGACAAGAUGAGGCUAAAAAAUUUUGGUAUAAAGUAAGUAUAAAUUCAGAUGAUCUUUCUAACUGUACAGGCUAUUUUAAUAGAAUUAUAUCCAUAAUUGAAAACAAUCAGAAGAGAAACGACAAGCUCCUAGCAUAUAAAGAUGAGUUUAAAAACAUAAGAAAUUUCUUUUCUAAAACUAUAUUUUUUGAUGAAGACAUGAAAAAUAAACUUGAUGAAUUUAUUUAUGAAUGUGAACAAGAGUGUAUGAUCAAUGAUAAUAUAAAAAAGAAGAUAUAAAUCAUAUGUUAUGGAUUAUACUGAAAUCAUUAUAUAGCUUUGAAUUGAAUUCAUAUAAAGAUUUUAAUAUAAAAUAUAAUUUACAAAAAUAAAGCAGGAUUAGUUUUCUGCUUUUUACAUUAUAAUUUUUUUAAAAAAGUGUUAUCUAACAUCCGUUAUAUUUGAAUUAAUCUAAAUUAGAUUGAAUUUGGUGUAAACAAAGUGCAAACAAAAAAAGUAUAAGAAUACAAAAAAGCCCUCAACUUUUUUCAAGUUCGGGCUUUUUUGUAGAAAUUAAACUAUAAUUAAGGAAACGAUACAAGAUAAAUAUAACAUUAUUUAUUUAGUUUGUCAACAACUUUUUAUAAAAAAUUACUAUUUUUGCAUUUUUAUAUUGGAAUCAAAAGAAAAAAAUAUAUUUGAAAAUUAAAAUUUUUUAUAAUUUGAUUUUUGUUAAUGCUAAUUAAAAAAAUUUUUUUAAAUAUAAAAAAAUUAAUAAUAUAAUUUGCAUUAGAAGACUAUUCAUGUUAUACUUUUCUAUAUAUUUACUUAAUUUAUUAGGAGGAGAA (((((((((((.((((((.(((((((((((....((((((((((((.((((....)))).....((((((.....(((((..((((.....)))))))))))))))..)))))))..((((..(((((.(((..(((((.....(((.......)))...)))))..)))................(((((((((........((((...((......(((..((....((((.((.(((((((((((........(((((.....))))).......((((((((.(((....))))))))))).......))))))))))).)).)))).....))..)))....))..))))..............(((....)))....))))))))))))))..))))......)))))..))))))))))).)))))).(((((((((((((((.........((((((((((((((((......)))))))).........(((((((((..((((((((((............((((((..((.((((((((...)))))))).))..)))))).......((((((......(((.(((...(((((((((((((..(((((.....))))).)))))))))))))....))).)))........(....)......(((((((((......))))))))).)))))).))).)))))))..))))))))).))))))))...)))))))))))))))...................................((((((.(((......(((((((.(((((....((((((((((....)))))))))).......))))).)))))))........))).))))))..)))))))))))...(((((....)))))....... (-178.44) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 661 50 1 141 92 NC_003454:FN1335|5end_Protein_translocase_subunit_YajC_1989011..1989241_NEGATIVE 307 599 551 203 154 NC_003454:FN2019|5end_Ribosome-binding_factor_A_522292..522522_NEGATIVE 268 720 673 200 153 NC_003454:FN1229|5end_hypothetical_protein_1886700..1886930_NEGATIVE 258 360 313 62 9 NC_003454:FN0118|5end_Chaperone_protein_dnaJ_750898..751128_POSITIVE 255 576 538 177 131 NC_003454:FN0128|5end_Spermidine/putrescine-binding_protein_756651..756881_POSITIVE 254 720 679 73 32 NC_003454:FN0508|5end_Serine_protease_1158652..1158882_NEGATIVE 248 400 351 191 142 NC_003454:FN0255|5end_Hypothetical_cytosolic_protein_881870..882100_POSITIVE 242 171 138 49 17 NC_003454:FN0904|5end_NAD(FAD)-utilizing_dehydrogenase_1562097..1562327_POSITIVE 239 690 649 44 2 NC_003454:FN1467|5end_hypothetical_protein_2149207..2149437_POSITIVE 238 725 684 59 19 NC_003454:FN0526|5end_Florfenicol_resistance_protein_1182977..1183207_NEGATIVE 235 560 516 114 74 NC_003454:FN1750|5end_Pyruvate-flavodoxin_oxidoreductase_247811..248041_POSITIVE 231 707 664 118 76 NC_003454:FN2129|5end_Hypothetical_cytosolic_protein_639815..640045_NEGATIVE 228 720 671 103 49 NC_003454:FN0042|5end_Rod_shape-determining_protein_rodA_682129..682359_NEGATIVE 227 330 288 180 137 NC_003454:FN1238|5end_hypothetical_protein_1896291..1896521_NEGATIVE 227 236 194 201 163 NC_003454:FN0687|5end_hypothetical_protein_1342563..1342793_POSITIVE 224 320 274 178 128 NC_003454:FN0628|5end_Glucosamine--fructose-6-phosphate_aminotransferase_[isomerizing]_1288257..1288487_NEGATIVE 223 705 669 48 9 NC_003454:FN0858|5end_4-alpha-glucanotransferase_1520507..1520737_NEGATIVE 222 717 671 100 58 NC_003454:FN1626|5end_LSU_ribosomal_protein_L30P_133049..133279_NEGATIVE 221 738 695 184 146 NC_003454:FN1241|5end_Hypohetical_Teichoic_Acid_Biosynthesis_Protein_1898512..1898742_NEGATIVE 221 334 292 62 10 NC_003454:FN1738|5end_ATP_synthase_subunit_C_237344..237574_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 242 171 138 39 7 NC_003454:FN0903|3end_Polysialic_acid_capsule_expression_protein_kpsF_1562167..1562317_POSITIVE 238 725 684 59 19 NC_003454:FN0527|3end_Alanyl-tRNA_synthetase_1182977..1183127_NEGATIVE 231 707 664 68 26 NC_003454:FN0001|3end_Chromosomal_replication_initiator_protein_dnaA_639865..640015_NEGATIVE 230 281 241 100 51 NC_003454:FN0742|3end_hypothetical_protein_1400671..1400821_POSITIVE 227 330 288 68 25 NC_003454:FN1239|3end_hypothetical_protein_1896403..1896553_NEGATIVE 222 717 671 87 45 NC_003454:FN1627|3end_SSU_ribosomal_protein_S5P_133062..133212_NEGATIVE 221 896 851 63 14 NC_003454:FN0874|3end_Phosphohydrolase_(MUTT/NUDIX_family_protein)_1534372..1534522_NEGATIVE 221 334 292 55 3 NC_003454:FN1739|3end_V-type_sodium_ATP_synthase_subunit_E_237351..237501_NEGATIVE 220 89 44 77 35 NC_003454:FN0251|3end_Hypothetical_membrane-spanning_Protein_874256..874406_POSITIVE 220 89 44 77 35 NC_003454:FN2061|3end_Hypothetical_membrane-spanning_protein_573666..573816_NEGATIVE 220 89 44 77 35 NC_003454:FN2050|3end_Hypothetical_membrane-spanning_protein_559590..559740_NEGATIVE 217 179 139 138 101 NC_003454:FN0191|3end_ATP-dependent_DNA_helicase_recG_817265..817415_POSITIVE 216 706 666 119 81 NC_003454:FN1188|3end_hypothetical_protein_1851357..1851507_POSITIVE 213 31 4 46 16 NC_003454:FN0407|3end_hypothetical_protein_1044654..1044804_NEGATIVE 213 713 673 145 95 NC_003454:FN2036|3end_DNA-directed_RNA_polymerase_beta_chain_542817..542967_NEGATIVE 212 729 685 150 107 NC_003454:FN1170|3end_Pyruvate-flavodoxin_oxidoreductase_1828707..1828857_NEGATIVE 212 725 689 80 45 NC_003454:FN1129|3end_Chromosome_partition_protein_smc_1777865..1778015_POSITIVE 211 174 135 90 46 NC_003454:FN0825|3end_Hypothetical_cytosolic_protein_1486436..1486586_POSITIVE 210 720 685 80 40 NC_003454:FN0977|3end_Cobyric_acid_synthase_1629090..1629240_NEGATIVE 210 629 585 131 87 NC_003454:FN0782|3end_Methyltransferase_1438281..1438431_NEGATIVE