Origin IGS: ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatataagcatttatttcttcatcattaggatttatatttttagcaaattcttccctagttttttgcattaataaattttcttcaatttgattctttaaagaatcttttgtaagtccacgaacttgtaacattcttctaaattgctctttatctcccatagatgactcaagttcctcatattgtttattaacttctgaactaggaacttttacctttaaatcttttgcaatatgtaaagttaaatttttatctataacatcattaaaggcaagtatatcaaccaattctttgtcaactctatctgagtaagttcttgaaagatcttgtttagctctttctatttcaattttttggatataatctttatttaaaagcatagcttcttgtgcctttttatttgctctacttgttctgtaactttcatatcctccatatgctaaagataagataaaaacaactgttagtataataataaaaggtttcatctttttacgaaattttcttattgacattttgtattttccctcacttttaattgta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tacaattaaaagtgagggaaaatacaaaatgtcaataagaaaatttcgtaaaaagatgaaaccttttattattatactaacagttgtttttatcttatctttagcatatggaggatatgaaagttacagaacaagtagagcaaataaaaaggcacaagaagctatgcttttaaataaagattatatccaaaaaattgaaatagaaagagctaaacaagatctttcaagaacttactcagatagagttgacaaagaattggttgatatacttgcctttaatgatgttatagataaaaatttaactttacatattgcaaaagatttaaaggtaaaagttcctagttcagaagttaataaacaatatgaggaacttgagtcatctatgggagataaagagcaatttagaagaatgttacaagttcgtggacttacaaaagattctttaaagaatcaaattgaagaaaatttattaatgcaaaaaactagggaagaatttgctaaaaatataaatcctaatgatgaagaaataaatgcttatatggctttatattcaatcccatctgataaaagagaagatgcagtgaatttatataaaacagaaaaggggacagaagcatttagagaagctttattaaaagctagaaaagaa Mask Tandem Repeat Region ================================================ ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatataagcatttatttcttcatcattaggatttatatttttagcaaattcttccctagttttttgcattaataaattttcttcaatttgattctttaaagaatcttttgtaagtccacgaacttgtaacattcttctaaattgctctttatctcccatagatgactcaagttcctcatattgtttattaacttctgaactaggaacttttacctttaaatcttttgcaatatgtaaagttaaatttttatctataacatcattaaaggcaagtatatcaaccaattctttgtcaactctatctgagtaagttcttgaaagatcttgtttagctctttctatttcaattttttggatataatctttatttaaaagcatagcttcttgtgcctttttatttgctctacttgttctgtaactttcatatcctccatatgctaaagataagataaaaacaactgttagtataataataaaaggtttcatctttttacgaaattttcttattgacattttgtattttccctcacttttaattgta Find is-nt database================================================ Query_seq: FN1320:FN1321|FN1320:FN1321:Peptidyl-prolyl cis-trans isomerase:Acetoacetate metabolism regulatory protein atoC:<-<-:1975422..1976070 649 ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatataagcatttatttcttcatcattaggatttatatttttagcaaattcttccctagttttttgcattaataaattttcttcaatttgattctttaaagaatcttttgtaagtccacgaacttgtaacattcttctaaattgctctttatctcccatagatgactcaagttcctcatattgtttattaacttctgaactaggaacttttacctttaaatcttttgcaatatgtaaagttaaatttttatctataacatcattaaaggcaagtatatcaaccaattctttgtcaactctatctgagtaagttcttgaaagatcttgtttagctctttctatttcaattttttggatataatctttatttaaaagcatagcttcttgtgcctttttatttgctctacttgttctgtaactttcatatcctccatatgctaaagataagataaaaacaactgttagtataataataaaaggtttcatctttttacgaaattttcttattgacattttgtattttccctcacttttaattgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1320:FN1321|FN1320:FN1321:Peptidyl-prolyl cis-trans isomerase:Acetoacetate metabolism regulatory protein atoC:<-<-:1975422..1976070 649 ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatataagcatttatttcttcatcattaggatttatatttttagcaaattcttccctagttttttgcattaataaattttcttcaatttgattctttaaagaatcttttgtaagtccacgaacttgtaacattcttctaaattgctctttatctcccatagatgactcaagttcctcatattgtttattaacttctgaactaggaacttttacctttaaatcttttgcaatatgtaaagttaaatttttatctataacatcattaaaggcaagtatatcaaccaattctttgtcaactctatctgagtaagttcttgaaagatcttgtttagctctttctatttcaattttttggatataatctttatttaaaagcatagcttcttgtgcctttttatttgctctacttgttctgtaactttcatatcctccatatgctaaagataagataaaaacaactgttagtataataataaaaggtttcatctttttacgaaattttcttattgacattttgtattttccctcacttttaattgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1320:FN1321|FN1320:FN1321:Peptidyl-prolyl cis-trans isomerase:Acetoacetate metabolism regulatory protein atoC:<-<-:1975422..1976070 649 ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatataagcatttatttcttcatcattaggatttatatttttagcaaattcttccctagttttttgcattaataaattttcttcaatttgattctttaaagaatcttttgtaagtccacgaacttgtaacattcttctaaattgctctttatctcccatagatgactcaagttcctcatattgtttattaacttctgaactaggaacttttacctttaaatcttttgcaatatgtaaagttaaatttttatctataacatcattaaaggcaagtatatcaaccaattctttgtcaactctatctgagtaagttcttgaaagatcttgtttagctctttctatttcaattttttggatataatctttatttaaaagcatagcttcttgtgcctttttatttgctctacttgttctgtaactttcatatcctccatatgctaaagataagataaaaacaactgttagtataataataaaaggtttcatctttttacgaaattttcttattgacattttgtattttccctcacttttaattgta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 112 Max: 630 Len: 519 Subject: UniRef90_Q2WPH9 Cluster: Probable protein export protein precursor; n=1; Clostridium beijerincki NCIMB 8052|Rep: Probable protein export protein precursor - Clostridium beijerincki NCIMB 8052 HSP 1 e-value: 1.0E-10 bit: 68.9 Len: 519 Query Start:112 Query End:630 Subject Strand: null Subject Start: 10 Subject End: 197 ............................................................................................................... K Y K M S I R K F R K K M K P F I I I L T V V F I L S L A Y G G Y E S Y R T S R A N K K A Q E A M L L N K D Y I Q - - - K I E I E R A K Q D L S R T Y S D R V D K - - E L V D I L A - - - - - - F N D V I D K N L T L H I A K D L K V K V P S S E V N K Q Y E E - - - - L E S S M G D K E Q F R R M L Q V R G L T K D S L K N Q I E E N L L M Q K T R E E F A K N I N P N D E E I N A Y ................... ............................................................................................................... K S R I S E G K T L K K L K K F V A A L A M V T I A V S A M G C K M I E K T P E A I Q K T V L A T V G N E K I T K G D L D K E M E K Y T A Q L K Q Q Y G D N Y E S N A Q V K D Q L Q Q A K K Q E L D S L V T Q K V V L Q K A T E L N L K P S D D D I N K Q V D D Q I A Q I K S Q Y S E E G Q F E S V L E Q N G L T E D Q L K D V V K N N V I M Q A V Q Q D I V K D I E V T D D D V Q T Y ................... Subject: UniRef90_Q18C77 Cluster: Putative peptidyl-prolyl isomerase precursor; n=2; Clostridium difficile|Rep: Putative peptidyl-prolyl isomerase precursor - Clostridium difficile (strain 630) HSP 1 e-value: 1.0E-8 bit: 62.0 Len: 408 Query Start:112 Query End:519 Subject Strand: null Subject Start: 33 Subject End: 163 ............................................................................................................... T S R A N K K A Q E A M L L N K D Y I Q K I E I E R A K Q D L S R T Y S D R V D K E L V D I L A F N D V I D K N L T L H I A K D L K V K V P S S E V N K Q Y E E L E S S M G D K E Q F R R M L Q V R G L T K D S L K N Q I E E N L L M Q K T R E E F A K N I N P N D E E I N A Y .................................................................................................................................. ............................................................................................................... T K E Q Y K K T K A V L S A T N N Y I N G Q S L D E L E K T L D K K G R N K L E N V I I S F M - - - - - V D N E L L Y Q E A K D K G L T P S K S E V D S K Y Q E L E D K M N L N T S Y K E K M D K A G V D K D Y L K Q E I S R D L A I D K N K K A F E D R I N I S D N D M E A Y .................................................................................................................................. Subject: UniRef90_Q180Z8 Cluster: Putative foldase lipoprotein (Late stage protein export lipoprotein) precursor; n=1; Clostridium difficile 630|Rep: Putative foldase lipoprotein (Late stage protein export lipoprotein) precursor - Clostridium difficile (strain 630) HSP 1 e-value: 1.0E-6 bit: 55.5 Len: 471 Query Start:112 Query End:582 Subject Strand: null Subject Start: 4 Subject End: 167 ............................................................................................................... I I I L T V V F I L S L A Y G G Y E S Y R T S R A N K K A Q E A M L L N K D Y I Q K I E I E R A K Q D L S R T Y S D R V - D K E L V D I L A F N D - - - - - V I D K N L T L H I - - - - A K D L K V K V P S S E V N K Q Y E E L E S S M G D K E Q F R R M L Q V R G L T K D S L K N Q I E E N L L M Q K T R E E F A K N I N P N D E E I N A Y ................................................................... ............................................................................................................... V I T L V I A M I L V V S V T A C S S S K G E T V - - A T V E G T K I S S D E F K K T - I A L Y K D S M E Q T Y G K D I W D K E V E K G V K Y K D K F K D L I L D Q L I T T E V I Y S Q A K K D N L L P K K E D V E K S F K E L K D A M G K D E K Y K E Q L K K L G I D D E F L R D Q Q E K D L A M Q N Y Q S N F A K K T K I S D E E M K K Y ................................................................... ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccctcacttttaattgta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 33 End: 134 ................................ M L L S P F L F Y I N S L H L L F Y Q M G L N I K P Y K H L F L H H ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 59 Strand: + Start: 239 End: 415 .............................................................................................................................................................................................................................................. M L L N C S L S P I D D S S S S Y C L L T S E L G T F T F K S F A I C K V K F L S I T S L K A S I S T N S L S T L S E .......................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 557 End: 649 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K T T V S I I I K G F I F L R N F L I D I L Y F P S L L I V Protein_Len: 30 Strand: - Start: 207 End: 296 .............................................................................................................................................................................................................. L I K Q L D V F K Y C E E L N S K I E W L H S L N R M N N M ................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 645 Y D K N L L M A E Q A K K N A R S T R Y S E Y G G Y A L S L I F V V T L I I I F P K M K K R F K R I S M K Y K G E S K M .... ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccctcacttttaattgta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccctcacttttaattgta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 74 HP_score: -6.2 Tail_Score: -4.42386 Start: 198 End: 213 Full_Region: AATTTTCTTCAATTT GATTCT TTAA AGAATC TTTTGTAAGTCCACG .....................................................................................................................................................................................................GATTCTTTAAAGAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 51 HP_score: -2.3 Tail_Score: -4.05875 Start: 423 End: 449 Full_Region: TATCTGAGTAAGTTC TTGAAAGATCT TGTTT AGCTCTTTCTA TTTCAATTTTTTGGA ......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGATCTTGTTTAGCTCTTTCTA........................................................................................................................................................................................................ TransTerm Strand: + Conf: 56 HP_score: -4.9 Tail_Score: -3.60569 Start: 425 End: 447 Full_Region: TCTGAGTAAGTTCTT GAAAGATCT TGTTT AGCTCTTTC TATTTCAATTTTTTG ........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATCTTGTTTAGCTCTTTC.......................................................................................................................................................................................................... Find igs database================================================ Query_seq: FN1320:FN1321|FN1320:FN1321:Peptidyl-prolyl cis-trans isomerase:Acetoacetate metabolism regulatory protein atoC:<-<-:1975422..1976070 649 ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccctcacttttaattgta Intra-Species Hit: Count: 1 Min: 1 Max: 111 Len: 111 Subject: NC_003454_FN1320_FN1321|Peptidyl-prolyl cis-trans isomerase:Acetoacetate metabolism regulatory protein atoC|NEGATIVE:NEGATIVE|[1975422,1976070]|649 HSP 1 e-value: 5.0E-56 bit: 220.0 Len: 111 Query Start:1 Query End:111 Subject Strand: POSITIVE Subject Start: 1 Subject End: 111 ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccat.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttcttttctagcttttaataaagcttctctaaatgcttctgtccccttttctgttttatataaattcactgcatcttctcttttatcagatgggattgaatataaagccat.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUUUUCUAGCUUUUAAUAAAGCUUCUCUAAAUGCUUCUGUCCCCUUUUCUGUUUUAUAUAAAUUCACUGCAUCUUCUCUUUUAUCAGAUGGGAUUGAAUAUAAAGCCAU .........((((((....))))))...........................(((((((((.(((((....(((((...........))))))))))..)))))))))... (-14.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUGGCUUUAUAUUCAAUCCCAUCUGAUAAAAGAGAAGAUGCAGUGAAUUUAUAUAAAACAGAAAAGGGGACAGAAGCAUUUAGAGAAGCUUUAUUAAAAGCUAGAAAAGAA ...(((((..(((((....(((((...........)))))...))))).................(....).))))).........((((((....))))))......... (-18.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 805 80 31 171 122 NC_003454:FN1320|5end_Peptidyl-prolyl_cis-trans_isomerase_1975331..1975561_NEGATIVE 309 66 24 211 168 NC_003454:FN1580|5end_2-C-methyl-D-erythritol_4-phosphate_cytidylyltransferase_90919..91149_NEGATIVE 281 86 44 175 123 NC_003454:FN0962|5end_Hypothetical_cytosolic_protein_1616887..1617117_NEGATIVE 275 98 65 123 87 NC_003454:FN0128|5end_Spermidine/putrescine-binding_protein_756651..756881_POSITIVE 273 95 51 63 7 NC_003454:FN1553|5end_Transporter_68538..68768_NEGATIVE 269 88 45 175 120 NC_003454:FN0577|5end_hypothetical_protein_1227237..1227467_POSITIVE 258 88 42 143 99 NC_003454:FN0701|5end_Methyltransferase_1359261..1359491_POSITIVE 254 65 22 86 35 NC_003454:FN0642|5end_hypothetical_protein_1299461..1299691_NEGATIVE 253 60 11 177 116 NC_003454:FN0133|5end_hypothetical_protein_769121..769351_POSITIVE 253 99 65 133 87 NC_003454:FN1625|5end_LSU_ribosomal_protein_L15P_132864..133094_NEGATIVE 252 89 47 188 147 NC_003454:FN2011|5end_Valyl-tRNA_synthetase_513096..513326_NEGATIVE 248 60 11 180 121 NC_003454:FN1627|5end_SSU_ribosomal_protein_S5P_133556..133786_NEGATIVE 244 109 69 170 139 NC_003454:FN1126|5end_Acetyltransferase_1770287..1770517_NEGATIVE 241 56 11 71 24 NC_003454:FN0366|5end_Phosphoacetylglucosamine_mutase_996366..996596_NEGATIVE 239 68 22 123 71 NC_003454:FN0972|5end_Cobyrinic_acid_a,c-diamide_synthase_1625607..1625837_NEGATIVE 239 41 5 102 57 NC_003454:FN0825|5end_Hypothetical_cytosolic_protein_1485124..1485354_POSITIVE 239 80 34 104 53 NC_003454:FN0288|5end_Hypoxanthine-guanine_phosphoribosyltransferase_915765..915995_NEGATIVE 238 74 34 96 60 NC_003454:FN0293|5end_Hemolysin_activator_protein_precursor_926559..926789_NEGATIVE 236 63 21 119 72 NC_003454:FN0262|5end_Formate_acetyltransferase_889807..890037_NEGATIVE 235 78 31 64 20 NC_003454:FN1876|5end_4-methyl-5(B-hydroxyethyl)-thiazole_monophosphate_biosynthesis_enzyme_365064..365294_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 267 39 1 150 112 NC_003454:FN1253|3end_hypothetical_protein_1910229..1910379_NEGATIVE 258 88 42 121 77 NC_003454:FN0700|3end_Protein_translocase_subunit_secF_1359319..1359469_POSITIVE 254 65 22 113 62 NC_003454:FN0643|3end_hypothetical_protein_1299434..1299584_NEGATIVE 253 99 65 133 87 NC_003454:FN1626|3end_LSU_ribosomal_protein_L30P_132864..133014_NEGATIVE 244 109 69 150 119 NC_003454:FN1127|3end_Hypothetical_membrane-spanning_protein_1770307..1770457_NEGATIVE 241 70 25 151 110 NC_003454:FN1461|3end_Histidinol-phosphatase_2141603..2141753_NEGATIVE 241 56 11 54 7 NC_003454:FN0367|3end_Integral_membrane_protein_996383..996533_NEGATIVE 240 79 34 151 103 NC_003454:FN0576|3end_D-amino_acid_dehydrogenase_large_subunit_1227302..1227452_POSITIVE 239 68 22 104 52 NC_003454:FN0973|3end_Histidinol-phosphate_aminotransferase_1625626..1625776_NEGATIVE 234 54 11 147 97 NC_003454:FN1628|3end_LSU_ribosomal_protein_L18P_133580..133730_NEGATIVE 222 50 8 51 8 NC_003454:FN1617|3end_Prolipoprotein_diacylglyceryltransferase_126442..126592_NEGATIVE 219 96 64 129 93 NC_003454:FN0102|3end_Ribonucleoside-diphosphate_reductase_alpha_chain_738580..738730_POSITIVE 218 94 58 57 15 NC_003454:FN1973|3end_Translation_initiation_inhibitor_472230..472380_NEGATIVE 217 32 7 149 125 NC_003454:FN1366|3end_Triosephosphate_isomerase_2016763..2016913_NEGATIVE 217 72 34 57 21 NC_003454:FN1350|3end_Integral_membrane_protein_2002359..2002509_NEGATIVE 216 90 41 138 94 NC_003454:FN0116|3end_Chaperone_protein_dnaK_750156..750306_POSITIVE 215 58 14 93 58 NC_003454:FN1030|3end_Hypothetical_membrane-spanning_protein_1683630..1683780_NEGATIVE 213 100 51 136 86 NC_003454:FN1738|3end_ATP_synthase_subunit_C_236340..236490_NEGATIVE 212 79 36 54 14 NC_003454:FN0854|3end_Glucose-1-phosphate_adenylyltransferase_1512324..1512474_NEGATIVE 212 79 34 48 9 NC_003454:FN1829|3end_hypothetical_protein_317717..317867_NEGATIVE