Origin IGS: ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatttattgtctacctctgataatgtaaaattactggaagattgacaaaagttataaatgtgtttatttataaataaatttaagaaaataaaaaattataagaaattaaagttttttattttttagtaaaaaaacttacattgacaaaaagatataaaaaaagtattatgtaggagtagtttttttagctagctatttatgtatttctatattagaatttaaatgagttttgagttaattcattgacataatgtatttttgaatttatgtatttctatattagaatttaaatctacttccaactaatttattatttgaatcaacagatttatgtatttctatattagaatttaaataagtattacagatgtttaagttaaaagattcaagtattcatttatgtatttctatattagaatttaaataaatctgacagtggttataatttcaaagaagttttttaatttatgtatttctatattagaatttaaatgtaactattccaggattaaatgaagtcaataatctaatttatgtatttctatattagaatttaaatgtagcttcattagctaattcaaataaaaaatctcttatttatgtatttctatattagaatttaaatatttttttgactggattcccacctttgtagtaagttctcatttatgtatttctatattagaatttaaatgaagaagcgtatttaattgatgatacatactatatatttatgtatttctatattagaatttaa Mask Tandem Repeat Region ================================================ ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Find is-nt database================================================ Query_seq: FN1175:FN1176|FN1175:FN1176:hypothetical protein:Hypothetical cytosolic protein:<-<-:1836839..1837595 757 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1175:FN1176|FN1175:FN1176:hypothetical protein:Hypothetical cytosolic protein:<-<-:1836839..1837595 757 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1175:FN1176|FN1175:FN1176:hypothetical protein:Hypothetical cytosolic protein:<-<-:1836839..1837595 757 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 365 End: 475 ............................................................................................................................................................................................................................................................................................................................................................................ M L E S F N L N I C N T Y L N S N I E I H K S V D S N N K L V G S R F K F .......................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 245 End: 334 .................................................................................................................................................................................................................................................... K I R S Y N C K F E L I S I C L N F F K K S I I V V T L N M ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 65 End: 169 ................................................................ K F E L I S I C L H S S V V F T P I W D F F Y K F E L I S I C L Y S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 589 End: 618 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAAAAAGATATAAAAAAAGTATTAT........................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 70 End: 99 .....................................................................GTTCTCATTTATGTATTTCTATATTAGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 444 End: 473 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAATCTACTTCCAACTAATTTATTAT............................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 42 HP_score: -2.4 Tail_Score: -3.4678 Start: 176 End: 205 Full_Region: ATAAGAGATTTTTTA TTTGAATTAGCT AATGA AGCTACATTTAAA TTCTAATATAGAAAT ...............................................................................................................................................................................TTTGAATTAGCTAATGAAGCTACATTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 43 HP_score: -3.2 Tail_Score: -3.27639 Start: 685 End: 706 Full_Region: TTTTCTTAAATTTAT TTATAAAT AAACAC ATTTATAA CTTTTGTCAATCTTC ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAATAAACACATTTATAA................................................... Find igs database================================================ Query_seq: FN1175:FN1176|FN1175:FN1176:hypothetical protein:Hypothetical cytosolic protein:<-<-:1836839..1837595 757 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaagtttttttactaaaaaataaaaaactttaatttcttataattttttattttcttaaatttatttataaataaacacatttataacttttgtcaatcttccagtaattttacattatcagaggtagacaataaatt Intra-Species Hit: Count: 2 Min: 1 Max: 757 Len: 757 Subject: NC_003454_FN1175_FN1176|hypothetical protein:Hypothetical cytosolic protein|NEGATIVE:NEGATIVE|[1836839,1837595]|757 HSP 1 e-value: 0.0 bit: 1110.0 Len: 623 Query Start:1 Query End:623 Subject Strand: POSITIVE Subject Start: 1 Subject End: 623 ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcnnnnnnntatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctnnnnnnnctactcctacataatacnnnnnnnatatctttttgtcaatgtaag...................................................................................................................................... ttaaattctaatatagaaatacataaatatatagtatgtatcatcaattaaatacgcttcttcatttaaattctaatatagaaatacataaatgagaacttactacaaaggtgggaatccagtcaaaaaaatatttaaattctaatatagaaatacataaataagagattttttatttgaattagctaatgaagctacatttaaattctaatatagaaatacataaattagattattgacttcatttaatcctggaatagttacatttaaattctaatatagaaatacataaattaaaaaacttctttgaaattataaccactgtcagatttatttaaattctaatatagaaatacataaatgaatacttgaatcttttaacttaaacatctgtaatacttatttaaattctaatatagaaatacataaatctgttgattcaaataataaattagttggaagtagatttaaattctaatatagaaatacataaattcaaaaatacattatgtcaatgaattaactcaaaactcatttaaattctaatatagaaatacataaatagctagctaaaaaaactactcctacataatactttttttatatctttttgtcaatgtaag...................................................................................................................................... HSP 2 e-value: 3.0E-17 bit: 91.7 Len: 46 Query Start:712 Query End:757 Subject Strand: POSITIVE Subject Start: 712 Subject End: 757 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcaatcttccagtaattttacattatcagaggtagacaataaatt .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtcaatcttccagtaattttacattatcagaggtagacaataaatt Subject: NC_003454_FN1174_FN1175|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1835793,1836646]|854 HSP 1 e-value: 5.0E-13 bit: 77.8 Len: 39 Query Start:265 Query End:303 Subject Strand: POSITIVE Subject Start: 650 Subject End: 688 ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaact...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaact...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-10 bit: 67.9 Len: 34 Query Start:332 Query End:365 Subject Strand: POSITIVE Subject Start: 715 Subject End: 748 ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaatgaa........................................................................................................................................................................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaatgaa........................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 37 Query Start:466 Query End:502 Subject Strand: POSITIVE Subject Start: 650 Subject End: 686 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattcaaaaa............................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaa............................................................................................................................................................................................................................................................... HSP 4 e-value: 8.0E-9 bit: 63.9 Len: 32 Query Start:199 Query End:230 Subject Strand: POSITIVE Subject Start: 650 Subject End: 681 ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaatta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaatta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 5 e-value: 8.0E-9 bit: 63.9 Len: 32 Query Start:64 Query End:95 Subject Strand: POSITIVE Subject Start: 716 Subject End: 747 ...............................................................atttaaattctaatatagaaatacataaatga...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...............................................................atttaaattctaatatagaaatacataaatga...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 8.0E-9 bit: 63.9 Len: 32 Query Start:402 Query End:433 Subject Strand: POSITIVE Subject Start: 781 Subject End: 812 .................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatct.................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatct.................................................................................................................................................................................................................................................................................................................................... HSP 7 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:132 Query End:162 Subject Strand: POSITIVE Subject Start: 584 Subject End: 614 ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 8 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:332 Query End:362 Subject Strand: POSITIVE Subject Start: 584 Subject End: 614 ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... HSP 9 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:401 Query End:431 Subject Strand: POSITIVE Subject Start: 584 Subject End: 614 ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... HSP 10 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:199 Query End:229 Subject Strand: POSITIVE Subject Start: 585 Subject End: 615 ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 11 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:265 Query End:295 Subject Strand: POSITIVE Subject Start: 585 Subject End: 615 ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 12 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:466 Query End:496 Subject Strand: POSITIVE Subject Start: 585 Subject End: 615 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt..................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt..................................................................................................................................................................................................................................................................... HSP 13 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:132 Query End:162 Subject Strand: POSITIVE Subject Start: 649 Subject End: 679 ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 14 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:332 Query End:362 Subject Strand: POSITIVE Subject Start: 649 Subject End: 679 ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... HSP 15 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:401 Query End:431 Subject Strand: POSITIVE Subject Start: 649 Subject End: 679 ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... HSP 16 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:132 Query End:162 Subject Strand: POSITIVE Subject Start: 715 Subject End: 745 ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 17 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:401 Query End:431 Subject Strand: POSITIVE Subject Start: 715 Subject End: 745 ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................................................................................... HSP 18 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:64 Query End:93 Subject Strand: POSITIVE Subject Start: 585 Subject End: 614 ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 19 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:534 Query End:563 Subject Strand: POSITIVE Subject Start: 585 Subject End: 614 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. HSP 20 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:64 Query End:93 Subject Strand: POSITIVE Subject Start: 650 Subject End: 679 ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 21 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:534 Query End:563 Subject Strand: POSITIVE Subject Start: 650 Subject End: 679 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. HSP 22 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:199 Query End:228 Subject Strand: POSITIVE Subject Start: 716 Subject End: 745 ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 23 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:265 Query End:294 Subject Strand: POSITIVE Subject Start: 716 Subject End: 745 ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 24 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:466 Query End:495 Subject Strand: POSITIVE Subject Start: 716 Subject End: 745 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................... HSP 25 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:534 Query End:563 Subject Strand: POSITIVE Subject Start: 716 Subject End: 745 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. HSP 26 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:64 Query End:93 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...............................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 27 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:133 Query End:162 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 ....................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 28 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:199 Query End:228 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ......................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 29 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:265 Query End:294 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 30 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:333 Query End:362 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 ............................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat........................................................................................................................................................................................................................................................................................................................................................................................................... HSP 31 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:466 Query End:495 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat...................................................................................................................................................................................................................................................................... HSP 32 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:534 Query End:563 Subject Strand: POSITIVE Subject Start: 781 Subject End: 810 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat.................................................................................................................................................................................................. HSP 33 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 587 Subject End: 614 ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 34 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 652 Subject End: 679 ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 35 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 718 Subject End: 745 ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 36 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:1 Query End:28 Subject Strand: POSITIVE Subject Start: 783 Subject End: 810 ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttaaattctaatatagaaatacataaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAAAUUCUAAUAUAGAAAUACAUAAAUAUAUAGUAUGUAUCAUCAAUUAAAUACGCUUCUUCAUUUAAAUUCUAAUAUAGAAAUACAUAAAUGAGAACUUACUACAAAGGUGGGAAUCCAGUCAAAAAAAUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUAAGAGAUUUUUUAUUUGAAUUAGCUAAUGAAGCUACAUUUAAAUUCUAAUAUAGAAAUACAUAAAUUAGAUUAUUGACUUCAUUUAAUCCUGGAAUAGUUACAUUUAAAUUCUAAUAUAGAAAUACAUAAAUUAAAAAACUUCUUUGAAAUUAUAACCACUGUCAGAUUUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUGAAUACUUGAAUCUUUUAACUUAAACAUCUGUAAUACUUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUCUGUUGAUUCAAAUAAUAAAUUAGUUGGAAGUAGAUUUAAAUUCUAAUAUAGAAAUACAUAAAUUCAAAAAUACAUUAUGUCAAUGAAUUAACUCAAAACUCAUUUAAAUUCUAAUAUAGAAAUACAUAAAUAGCUAGCUAAAAAAACUACUCCUACAUAAUACUUUUUUUAUAUCUUUUUGUCAAUGUAAGUUUUUUUACUAAAAAAUAAAAAACUUUAAUUUCUUAUAAUUUUUUAUUUUCUUAAAUUUAUUUAUAAAUAAACACAUUUAUAACUUUUGUCAAUCUUCCAGUAAUUUUACAUUAUCAGAGGUAGACAAUAAAUU .....(((((...(((((.((((((.........)))))).......(((((((......((((((((..(((((...))))).....))))))))..((((((.....))))))................))))))).)))))...)))))........((((((((((((((((((...((((.(((.(((((((((((.........(((((((((...........(((((.((....))..)))))..(((.(((((.........(((((...(((((.....................((((((.(((..........(((((((((.((..(((((...(((((.....(((((((.(((..((...(((......)))..)).)))....)))))))..)))))...))))).)).))))))))).)))))))))...(((((.((((...(((.((((((..(((((...)))))..((((((.............))))))...)))))).)))...)))).)))))..)))))...))))).........(((....)))....))))).)))............))))))))).........))))).)))))).))))))).))))))))......))))))))))........................((((((((......))))))))...(((((...((((..(((((.....)))))..))))..)))))...... (-101.39) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUUAUUGUCUACCUCUGAUAAUGUAAAAUUACUGGAAGAUUGACAAAAGUUAUAAAUGUGUUUAUUUAUAAAUAAAUUUAAGAAAAUAAAAAAUUAUAAGAAAUUAAAGUUUUUUAUUUUUUAGUAAAAAAACUUACAUUGACAAAAAGAUAUAAAAAAAGUAUUAUGUAGGAGUAGUUUUUUUAGCUAGCUAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUGAGUUUUGAGUUAAUUCAUUGACAUAAUGUAUUUUUGAAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUCUACUUCCAACUAAUUUAUUAUUUGAAUCAACAGAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAAGUAUUACAGAUGUUUAAGUUAAAAGAUUCAAGUAUUCAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAAAUCUGACAGUGGUUAUAAUUUCAAAGAAGUUUUUUAAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUGUAACUAUUCCAGGAUUAAAUGAAGUCAAUAAUCUAAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUGUAGCUUCAUUAGCUAAUUCAAAUAAAAAAUCUCUUAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAUUUUUUUGACUGGAUUCCCACCUUUGUAGUAAGUUCUCAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUGAAGAAGCGUAUUUAAUUGAUGAUACAUACUAUAUAUUUAUGUAUUUCUAUAUUAGAAUUUAA ......(((((..(.(((..((((.....))))..))).)...)))))...(((((((((....))))))))).(((((((.(((((((((((((((.(((....))).)))))))))))))))............(((((...(((((((((((....(((.....(((((((((((......((((((((((((........(((((...(((((.....(((((((..((........((((((.....(((..(((((((((..((((....))))..)))))))))..)))..............((((((((.((..(((((((((....(((((...(((((..(((((.((((((...(((.(((......))).)))..)))))).))))).....)))))...))))).....)))))))))..((((((((((.........(((((....)))))......(((((...)))))......))))))))))...)).)))))))).))))))..)).)))))))....)))))...))))).......)))))).....))))))...((((((........))))))...))))))))))).....)))..)))))))))))..(((....)))....(((((((..((((((((((.....(((((...)))))..)))))).))))..(((((........))))).))))))).....)))))...........))))))). (-134.66) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 771 130 81 221 172 NC_003454:FN1175|5end_hypothetical_protein_1836748..1836978_NEGATIVE 247 747 702 161 112 NC_003454:FN1969|5end_Hemin_transport_system_permease_protein_hmuU_468211..468441_NEGATIVE 238 211 175 210 166 NC_003454:FN1817|5end_Hemolysin_305273..305503_NEGATIVE 223 397 360 82 44 NC_003454:FN0633|5end_Replication_protein_1290928..1291158_POSITIVE 219 265 231 53 22 NC_003454:FN0540|5end_Glutamate-1-semialdehyde_2,1-aminomutase_1193945..1194175_NEGATIVE 207 344 308 202 163 NC_003454:FN1324|5end_1-deoxy-D-xylulose_5-phosphate_reductoisomerase_1980312..1980542_NEGATIVE 206 550 509 120 80 NC_003454:FN1045|5end_hypothetical_protein_1695987..1696217_NEGATIVE 205 747 713 181 140 NC_003454:FN2066|5end_hypothetical_protein_576277..576507_POSITIVE 204 609 568 45 2 NC_003454:FN1111|5end_Dipeptide-binding_protein_1756181..1756411_NEGATIVE 203 356 317 82 40 NC_003454:FN1648|5end_Oligopeptide_transport_ATP-binding_protein_oppF_143317..143547_NEGATIVE 202 608 562 120 71 NC_003454:FN1369|5end_Zinc_finger_protein_2019006..2019236_NEGATIVE 202 477 446 68 38 NC_003454:FN0237|5end_ABC_transporter_permease_protein_862128..862358_NEGATIVE 201 627 581 209 158 NC_003454:FN0994|5end_hypothetical_protein_1649223..1649453_POSITIVE 200 604 562 130 90 NC_003454:FN0846|5end_hypothetical_protein_1504242..1504472_POSITIVE 199 636 598 203 162 NC_003454:FN1519|5end_23S_rRNA_methyltransferase_24792..25022_NEGATIVE 197 738 694 64 20 NC_003454:FN1384|5end_IAA_acetyltransferase_2038256..2038486_NEGATIVE 195 740 698 101 61 NC_003454:FN1318|5end_RNA_polymerase_sigma_factor_rpoD_1972096..1972326_NEGATIVE 194 720 671 158 97 NC_003454:FN1972|5end_hypothetical_protein_472071..472301_NEGATIVE 193 359 313 190 137 NC_003454:FN0739|5end_Formiminotetrahydrofolate_cyclodeaminase_1397655..1397885_NEGATIVE 191 209 164 72 28 NC_003454:FN2039|5end_50S_ribosomal_protein_L1_548557..548787_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 381 571 531 124 79 NC_003454:FN1175|3end_hypothetical_protein_1836557..1836707_NEGATIVE 232 738 702 131 97 NC_003454:FN1893|3end_Fusobacterium_outer_membrane_protein_family_374412..374562_NEGATIVE 231 216 178 106 52 NC_003454:FN1385|3end_hypothetical_protein_2038394..2038544_NEGATIVE 218 633 592 47 3 NC_003454:FN2059|3end_Outer_membrane_protein_572877..573027_NEGATIVE 218 633 592 47 3 NC_003454:FN2048|3end_Outer_membrane_protein_558801..558951_NEGATIVE 207 745 715 81 48 NC_003454:FN2075|3end_hypothetical_protein_586440..586590_NEGATIVE 206 635 591 150 101 NC_003454:FN1951|3end_ATPase_associated_with_chromosome_architecture/replication_458400..458550_NEGATIVE 204 609 568 61 18 NC_003454:FN1112|3end_Dipeptide_transport_system_permease_protein_dppC_1756165..1756315_NEGATIVE 203 356 317 72 30 NC_003454:FN1649|3end_Oligopeptide_transport_ATP-binding_protein_oppD_143327..143477_NEGATIVE 202 608 562 136 87 NC_003454:FN1370|3end_Endonuclease_2018990..2019140_NEGATIVE 202 738 702 131 97 NC_003454:FN0387|3end_Fusobacterium_outer_membrane_protein_family_1026596..1026746_POSITIVE 201 627 581 114 63 NC_003454:FN0993|3end_Trk_system_potassium_uptake_protein_trkG_1649208..1649358_POSITIVE 196 606 564 61 28 NC_003454:FN1941|3end_ClpB_protein_443953..444103_POSITIVE 193 687 643 101 59 NC_003454:FN0761|3end_Bvg_accessory_factor_1419719..1419869_POSITIVE 190 742 701 73 33 NC_003454:FN1724|3end_Potassium_uptake_protein_KtrA_222654..222804_NEGATIVE 184 145 106 59 7 NC_003454:FN1359|3end_Dipeptide-binding_protein_2012204..2012354_POSITIVE 184 630 582 142 88 NC_003454:FN1349|3end_ABC_transporter_permease_protein_2001150..2001300_NEGATIVE 183 633 592 58 14 NC_003454:FN0253|3end_Outer_membrane_protein_875063..875213_POSITIVE 183 605 562 95 42 NC_003454:FN1837|3end_putative_nucleotide-binding_protein_326725..326875_NEGATIVE 182 187 160 145 121 NC_003454:FN0955|3end_hypothetical_protein_1611928..1612078_NEGATIVE