Origin IGS: ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatttaaatgagaattttttaataattctgctctttgttctaagatttatgtatttctatattagaatttaaatttttcaatactttaaatattctacaaaagcacttcatttatgtatttctatattagaatttaaatattaaaaaaggtaatttttctgataggagttttttaatttatgtatttctatattagaatttaaatatggaaagatagtaagacatttgaaatttatagaaatttatgtatttctatattagaatttaaatatcgaacaagatataaatgattgcagggaaagaataaatttatgtatttaaaatgtactgaccccaaaaagttagacaaatttaatttaacttactaataaggattgacttctgtaagaagcaggagttaatccttttaatttttctgttactttttcttcctctataaaccctatgcttatctgagttccctctatatcactttctttttttctattccatattttttcaagtcaatttttgcaatacaactattttcaaaatttttaaattttgtatattctattggatttcctgtaagacaattataggttttctaaatctgaaatatctttctttaattcatcaggaattttagatgcatctgttactctatagattgctttatattttttcttttttaaattacaatttctacaagcaataattaaaacatttccaatgtaatttcctttttcctcaggaatagttcttagtatagaagatggaaaataattacttgtattttcctctttttttattattctaaaaatgattgactttttgtttctttgattttctgtaataaaagagtcgatatatag Mask Tandem Repeat Region ================================================ ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Find is-nt database================================================ Query_seq: FN1174:FN1175|FN1174:FN1175:hypothetical protein:hypothetical protein:-><-:1835793..1836646 854 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1174:FN1175|FN1174:FN1175:hypothetical protein:hypothetical protein:-><-:1835793..1836646 854 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1174:FN1175|FN1174:FN1175:hypothetical protein:hypothetical protein:-><-:1835793..1836646 854 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 7 End: 276 ...... M D S F I T E N Q R N K K S I I F R I I K K E E N T S N Y F P S S I L R T I P E E K G N Y I G N V L I I A C R N C N L K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 299 End: 388 .......................................................................................................................................................................................................................................................................................................... M E Y T K F K N F E N S C I A K I D L K K Y G I E K K K V I .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: + Start: 361 End: 495 ........................................................................................................................................................................................................................................................................................................................................................................ M W N R K K E S D I E G T Q I S I G F I E E E K V T E K L K G L T P A S Y R S Q S L L V S ....................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 506 End: 619 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S N F L G S V H F K Y I N L F F P C N H L Y L V R Y L N S N I E I H K F L ........................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 613 End: 711 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S I N F K C L T I F P Y L N S N I E I H K L K N S Y Q K N Y L F ............................................................................................................................................... Protein_Len: 42 Strand: - Start: 277 End: 402 .................................................................................................................................................................................................................................................................................... L Q R V P F G I S Y V F N L F K S F L Q I A F I S K F F Y P I S F F F T I Y L S S M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 230 End: 364 ..................................................................................................................................................................................................................................... F E Q H I L S L Y K L N L F G I I T K C S I W Y F I C F K F I K F I T T N C F N V Q F F M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 173 End: 202 ............................................................................................................................................................................CTTTATATTTTTTCTTTTTTAAATTACAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 591 End: 620 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATTTATGTATTTCTATATTAGAAT.......................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 62 HP_score: -4.0 Tail_Score: -4.59954 Start: 75 End: 98 Full_Region: cttagtatagaagat ggaaaata attacttg tattttcc tctttttttattatt ..........................................................................ggaaaataattacttgtattttcc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 45 HP_score: -4.0 Tail_Score: -2.6062 Start: 75 End: 98 Full_Region: AATAATAAAAAAAGA GGAAAATA CAAGTAAT TATTTTCC ATCTTCTATACTAAG ..........................................................................GGAAAATACAAGTAATTATTTTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 60 HP_score: -3.9 Tail_Score: -4.45083 Start: 273 End: 291 Full_Region: tattctattggattt cctgtaa gacaa ttatagg ttttctaaatctgaa ................................................................................................................................................................................................................................................................................cctgtaagacaattatagg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 86 HP_score: -6.6 Tail_Score: -5.16206 Start: 445 End: 489 Full_Region: tttaatttaacttac taataaggattgacttctgt aagaa gcaggagttaatccttttaa tttttctgttacttt ............................................................................................................................................................................................................................................................................................................................................................................................................................................................taataaggattgacttctgtaagaagcaggagttaatccttttaa............................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 57 HP_score: -4.9 Tail_Score: -3.75105 Start: 451 End: 483 Full_Region: ACAGAAAAATTAAAA GGATTAACTCCTG CTTCTTA CAGAAGTCAATCC TTATTAGTAAGTTAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAACTCCTGCTTCTTACAGAAGTCAATCC................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 95 HP_score: -10.0 Tail_Score: -4.84033 Start: 451 End: 483 Full_Region: ttaacttactaataa ggattgacttctgt aagaa gcaggagttaatcc ttttaatttttctgt ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggattgacttctgtaagaagcaggagttaatcc................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 39 HP_score: -2.0 Tail_Score: -2.79648 Start: 597 End: 622 Full_Region: GATATTTAAATTCTA ATATAGAAAT ACATAA ATTTCTATAA ATTTCAAATGTCTTA ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATACATAAATTTCTATAA........................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 45 HP_score: -3.7 Tail_Score: -3.12936 Start: 600 End: 619 Full_Region: gacatttgaaattta tagaaat ttatgt atttcta tattagaatttaaat .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tagaaatttatgtatttcta........................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 43 HP_score: -3.7 Tail_Score: -2.6583 Start: 600 End: 619 Full_Region: ATTTAAATTCTAATA TAGAAAT ACATAA ATTTCTA TAAATTTCAAATGTC .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAATACATAAATTTCTA........................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: FN1174:FN1175|FN1174:FN1175:hypothetical protein:hypothetical protein:-><-:1835793..1836646 854 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaatttaaaaaagaaaaaatataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatacaaaatttaaaaattttgaaaatagttgtattgcaaaaattgacttgaaaaaatatggaatagaaaaaaagaaagtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt Intra-Species Hit: Count: 2 Min: 1 Max: 854 Len: 854 Subject: NC_003454_FN1174_FN1175|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1835793,1836646]|854 HSP 1 e-value: 0.0 bit: 936.0 Len: 472 Query Start:383 Query End:854 Subject Strand: POSITIVE Subject Start: 383 Subject End: 854 ..............................................................................................................................................................................................................................................................................................................................................................................................gtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt ..............................................................................................................................................................................................................................................................................................................................................................................................gtgatatagagggaactcagataagcatagggtttatagaggaagaaaaagtaacagaaaaattaaaaggattaactcctgcttcttacagaagtcaatccttattagtaagttaaattaaatttgtctaactttttggggtcagtacattttaaatacataaatttattctttccctgcaatcatttatatcttgttcgatatttaaattctaatatagaaatacataaatttctataaatttcaaatgtcttactatctttccatatttaaattctaatatagaaatacataaattaaaaaactcctatcagaaaaattaccttttttaatatttaaattctaatatagaaatacataaatgaagtgcttttgtagaatatttaaagtattgaaaaatttaaattctaatatagaaatacataaatcttagaacaaagagcagaattattaaaaaattctcatttaaatt HSP 2 e-value: 9.0E-86 bit: 319.0 Len: 182 Query Start:1 Query End:182 Subject Strand: POSITIVE Subject Start: 1 Subject End: 182 ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataatnnnnnnngaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaattt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ctatatatcgactcttttattacagaaaatcaaagaaacaaaaagtcaatcatttttagaataataaaaaaagaggaaaatacaagtaattattttccatcttctatactaagaactattcctgaggaaaaaggaaattacattggaaatgttttaattattgcttgtagaaattgtaattt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 1.0E-57 bit: 226.0 Len: 114 Query Start:196 Query End:309 Subject Strand: POSITIVE Subject Start: 196 Subject End: 309 ...................................................................................................................................................................................................tataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................tataaagcaatctatagagtaacagatgcatctaaaattcctgatgaattaaagaaagatatttcagatttagaaaacctataattgtcttacaggaaatccaatagaatatac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_003454_FN1175_FN1176|hypothetical protein:Hypothetical cytosolic protein|NEGATIVE:NEGATIVE|[1836839,1837595]|757 HSP 1 e-value: 6.0E-13 bit: 77.8 Len: 39 Query Start:650 Query End:688 Subject Strand: POSITIVE Subject Start: 265 Subject End: 303 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaact...................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaact...................................................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 67.9 Len: 34 Query Start:715 Query End:748 Subject Strand: POSITIVE Subject Start: 332 Subject End: 365 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaatgaa.......................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaatgaa.......................................................................................................... HSP 3 e-value: 2.0E-9 bit: 65.9 Len: 33 Query Start:713 Query End:745 Subject Strand: POSITIVE Subject Start: 130 Subject End: 162 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatatttaaattctaatatagaaatacataaat............................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aatatttaaattctaatatagaaatacataaat............................................................................................................. HSP 4 e-value: 2.0E-9 bit: 65.9 Len: 37 Query Start:650 Query End:686 Subject Strand: POSITIVE Subject Start: 466 Subject End: 502 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattaaaaaa........................................................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaattcaaaaa........................................................................................................................................................................ HSP 5 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:716 Query End:747 Subject Strand: POSITIVE Subject Start: 64 Subject End: 95 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatga........................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatga........................................................................................................... HSP 6 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:583 Query End:614 Subject Strand: POSITIVE Subject Start: 131 Subject End: 162 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 7 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:648 Query End:679 Subject Strand: POSITIVE Subject Start: 131 Subject End: 162 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatttaaattctaatatagaaatacataaat............................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 8 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:650 Query End:681 Subject Strand: POSITIVE Subject Start: 199 Subject End: 230 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatta............................................................................................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatta............................................................................................................................................................................. HSP 9 e-value: 9.0E-9 bit: 63.9 Len: 32 Query Start:781 Query End:812 Subject Strand: POSITIVE Subject Start: 402 Subject End: 433 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatct.......................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatct.......................................... HSP 10 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:585 Query End:615 Subject Strand: POSITIVE Subject Start: 199 Subject End: 229 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... HSP 11 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:585 Query End:615 Subject Strand: POSITIVE Subject Start: 265 Subject End: 295 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... HSP 12 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:584 Query End:614 Subject Strand: POSITIVE Subject Start: 332 Subject End: 362 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 13 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:649 Query End:679 Subject Strand: POSITIVE Subject Start: 332 Subject End: 362 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 14 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:584 Query End:614 Subject Strand: POSITIVE Subject Start: 401 Subject End: 431 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 15 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:649 Query End:679 Subject Strand: POSITIVE Subject Start: 401 Subject End: 431 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 16 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:715 Query End:745 Subject Strand: POSITIVE Subject Start: 401 Subject End: 431 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttaaattctaatatagaaatacataaat............................................................................................................. HSP 17 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:585 Query End:615 Subject Strand: POSITIVE Subject Start: 466 Subject End: 496 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaatt............................................................................................................................................................................................................................................... HSP 18 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:585 Query End:614 Subject Strand: POSITIVE Subject Start: 64 Subject End: 93 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 19 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:650 Query End:679 Subject Strand: POSITIVE Subject Start: 64 Subject End: 93 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 20 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 64 Subject End: 93 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 21 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 133 Subject End: 162 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 22 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:716 Query End:745 Subject Strand: POSITIVE Subject Start: 199 Subject End: 228 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. HSP 23 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 199 Subject End: 228 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 24 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:716 Query End:745 Subject Strand: POSITIVE Subject Start: 265 Subject End: 294 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. HSP 25 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 265 Subject End: 294 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 26 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 333 Subject End: 362 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 27 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:716 Query End:745 Subject Strand: POSITIVE Subject Start: 466 Subject End: 495 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. HSP 28 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 466 Subject End: 495 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 29 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:585 Query End:614 Subject Strand: POSITIVE Subject Start: 534 Subject End: 563 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 30 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:650 Query End:679 Subject Strand: POSITIVE Subject Start: 534 Subject End: 563 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 31 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:716 Query End:745 Subject Strand: POSITIVE Subject Start: 534 Subject End: 563 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................................................................................. HSP 32 e-value: 1.0E-7 bit: 60.0 Len: 30 Query Start:781 Query End:810 Subject Strand: POSITIVE Subject Start: 534 Subject End: 563 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atttaaattctaatatagaaatacataaat............................................ HSP 33 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:587 Query End:614 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat................................................................................................................................................................................................................................................ HSP 34 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:652 Query End:679 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................................................................................................................................................... HSP 35 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:718 Query End:745 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................................................................................. HSP 36 e-value: 2.0E-6 bit: 56.0 Len: 28 Query Start:783 Query End:810 Subject Strand: POSITIVE Subject Start: 1 Subject End: 28 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................ ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaattctaatatagaaatacataaat............................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUAUAUAUCGACUCUUUUAUUACAGAAAAUCAAAGAAACAAAAAGUCAAUCAUUUUUAGAAUAAUAAAAAAAGAGGAAAAUACAAGUAAUUAUUUUCCAUCUUCUAUACUAAGAACUAUUCCUGAGGAAAAAGGAAAUUACAUUGGAAAUGUUUUAAUUAUUGCUUGUAGAAAUUGUAAUUUAAAAAAGAAAAAAUAUAAAGCAAUCUAUAGAGUAACAGAUGCAUCUAAAAUUCCUGAUGAAUUAAAGAAAGAUAUUUCAGAUUUAGAAAACCUAUAAUUGUCUUACAGGAAAUCCAAUAGAAUAUACAAAAUUUAAAAAUUUUGAAAAUAGUUGUAUUGCAAAAAUUGACUUGAAAAAAUAUGGAAUAGAAAAAAAGAAAGUGAUAUAGAGGGAACUCAGAUAAGCAUAGGGUUUAUAGAGGAAGAAAAAGUAACAGAAAAAUUAAAAGGAUUAACUCCUGCUUCUUACAGAAGUCAAUCCUUAUUAGUAAGUUAAAUUAAAUUUGUCUAACUUUUUGGGGUCAGUACAUUUUAAAUACAUAAAUUUAUUCUUUCCCUGCAAUCAUUUAUAUCUUGUUCGAUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUUUCUAUAAAUUUCAAAUGUCUUACUAUCUUUCCAUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUUAAAAAACUCCUAUCAGAAAAAUUACCUUUUUUAAUAUUUAAAUUCUAAUAUAGAAAUACAUAAAUGAAGUGCUUUUGUAGAAUAUUUAAAGUAUUGAAAAAUUUAAAUUCUAAUAUAGAAAUACAUAAAUCUUAGAACAAAGAGCAGAAUUAUUAAAAAAUUCUCAUUUAAAUU .......((..((((((......(((.......((((.....((((((((.....((((((((.......((((((((((((........)))))))).)))).....((((......(((((........)))))......))))...))))))))...(((((((((((..((((........................)))))))))).)))))..((((((.(((...((((((..........((((....)))).(((.(((.....))).....)))...))))))...............(((((((....)))))))....))).))))))......))))))))....((((((((((.(((....(((((((((((....(((((.(((..((((((.....)))))).))).(((((.((((.........((((((((((((.(((.(((.......))).))).))))))).)))))........(((((..(((((.((((....)))).)).))).)))))........)))).))))))))))...)))))))...))))((..((((((((((((....(((((((((......)))))))))))))).)))))))..))..)))))))))))))...)))).............................((((.((((...(((..(((((((((((((((((.....(((((((.(((.........))).)))))))....)))).)))))))))))))..))).))))...))))...........)))......))))))..)).......................... (-144.36) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUUAAAUGAGAAUUUUUUAAUAAUUCUGCUCUUUGUUCUAAGAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUUUUUCAAUACUUUAAAUAUUCUACAAAAGCACUUCAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAUUAAAAAAGGUAAUUUUUCUGAUAGGAGUUUUUUAAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAUGGAAAGAUAGUAAGACAUUUGAAAUUUAUAGAAAUUUAUGUAUUUCUAUAUUAGAAUUUAAAUAUCGAACAAGAUAUAAAUGAUUGCAGGGAAAGAAUAAAUUUAUGUAUUUAAAAUGUACUGACCCCAAAAAGUUAGACAAAUUUAAUUUAACUUACUAAUAAGGAUUGACUUCUGUAAGAAGCAGGAGUUAAUCCUUUUAAUUUUUCUGUUACUUUUUCUUCCUCUAUAAACCCUAUGCUUAUCUGAGUUCCCUCUAUAUCACUUUCUUUUUUUCUAUUCCAUAUUUUUUCAAGUCAAUUUUUGCAAUACAACUAUUUUCAAAAUUUUUAAAUUUUGUAUAUUCUAUUGGAUUUCCUGUAAGACAAUUAUAGGUUUUCUAAAUCUGAAAUAUCUUUCUUUAAUUCAUCAGGAAUUUUAGAUGCAUCUGUUACUCUAUAGAUUGCUUUAUAUUUUUUCUUUUUUAAAUUACAAUUUCUACAAGCAAUAAUUAAAACAUUUCCAAUGUAAUUUCCUUUUUCCUCAGGAAUAGUUCUUAGUAUAGAAGAUGGAAAAUAAUUACUUGUAUUUUCCUCUUUUUUUAUUAUUCUAAAAAUGAUUGACUUUUUGUUUCUUUGAUUUUCUGUAAUAAAAGAGUCGAUAUAUAG ....((((((((((((.......))))).(((.(((((......(((((.(((((.....(((........))).....)))))..))))).....))))))))...))))))).(((((((....((((((.........................((..((((((.............((((.......(((.(((...(((((((((((((....((((....(((....(((((((((......)))))))))...((((((..(((((......)))))....(((.((((((...............((((.......)))).......(((((((((((.(((((.................((((((((((((((((.....))))))))))))))))..))))).))))..))))))).............)))..)))..))).))))))........)))...))))....))).)))))))))).))).))).......)))).............(((((((....)))))))....))))))..))...(((((((.....)))))))..))))))....)))))))...(((..(((((.....)))))..))).((((((((......))))).)))..((((((..(((((((....((((((...((...((((((......((.(((((..........(((((........)))))(((....(((((.((((((.((((((((........))))))))))))))..)))))..))).))))).))......))))))....)).....)))))))))))))..))))))... (-154.25) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 527 500 451 219 170 NC_003454:FN0864|5end_hypothetical_protein_1522900..1523130_NEGATIVE 438 500 451 173 123 NC_003454:FN1997|5end_Transcriptional_regulator_499758..499988_POSITIVE 288 489 444 163 118 NC_003454:FN1343|5end_seC-independent_protein_TATD_1997232..1997462_NEGATIVE 258 587 546 230 194 NC_003454:FN1231|5end_Inosine-5'-monophosphate_dehydrogenase_1888906..1889136_NEGATIVE 247 236 199 52 4 NC_003454:FN0365|5end_ATP_synthase_protein_I,_sodium_ion_specific_994859..995089_NEGATIVE 239 470 421 214 162 NC_003454:FN0222|5end_Melibiose_carrier_protein_846812..847042_POSITIVE 236 520 472 127 80 NC_003454:FN0021|5end_4-diphosphocytidyl-2-C-methyl-D-erythritol_kinase_659890..660120_POSITIVE 232 133 93 61 19 NC_003454:FN0151|5end_3-oxoacyl-[acyl-carrier-protein]_synthase_778771..779001_POSITIVE 232 299 252 191 137 NC_003454:FN1839|5end_glycerol_kinase_328272..328502_POSITIVE 230 244 207 72 30 NC_003454:FN0859|5end_hypothetical_protein_1521229..1521459_NEGATIVE 230 485 447 199 164 NC_003454:FN0496|5end_hypothetical_protein_1140910..1141140_POSITIVE 229 477 447 227 197 NC_003454:FN1844|5end_Ketoacyl_reductase_hetN_333593..333823_POSITIVE 226 417 381 202 163 NC_003454:FN1561|5end_Hypothetical_cytosolic_protein_83760..83990_NEGATIVE 221 119 78 222 184 NC_003454:FN1215|5end_Hypothetical_cytosolic_protein_1876167..1876397_NEGATIVE 221 660 611 116 72 NC_003454:FN1846|5end_hypothetical_protein_335519..335749_POSITIVE 221 485 450 58 14 NC_003454:FN1506|5end_5-amino-6-(5-phosphoribosylamino)uracil_reductase_10871..11101_POSITIVE 219 543 507 81 46 NC_003454:FN0127|5end_Fe-S_oxidoreductase_756312..756542_NEGATIVE 219 575 553 121 98 NC_003454:FN1559|5end_cell_volume_regulation_protein_CvrA_80827..81057_POSITIVE 218 759 717 158 114 NC_003454:FN1064|5end_hypothetical_protein_1710528..1710758_POSITIVE 216 524 482 42 6 NC_003454:FN0208|5end_(R)-2-hydroxyglutaryl-CoA_dehydratase_beta-subunit_834968..835198_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 785 500 451 50 1 NC_003454:FN0209|3end_Hypothetical_cytosolic_protein_836800..836950_POSITIVE 728 510 461 55 6 NC_003454:FN0842|3end_hypothetical_protein_1502822..1502972_NEGATIVE 719 530 481 61 12 NC_003454:FN1441|3end_PTS_system,_fructose-specific_IIABC_component_2110123..2110273_POSITIVE 719 530 481 61 12 NC_003454:FN0788|3end_hypothetical_protein_1443940..1444090_NEGATIVE 693 500 456 45 1 NC_003454:FN1890|3end_hypothetical_protein_373045..373195_NEGATIVE 688 490 443 63 16 NC_003454:FN1801|3end_Sodium/glutamate_symport_carrier_protein_282636..282786_NEGATIVE 641 530 484 47 1 NC_003454:FN0487|3end_D-lactate_dehydrogenase_1131756..1131906_NEGATIVE 606 530 481 71 22 NC_003454:FN2067|3end_Thiol:disulfide_interchange_protein_tlpA_576884..577034_NEGATIVE 527 500 451 79 30 NC_003454:FN0865|3end_hypothetical_protein_1523040..1523190_NEGATIVE 487 532 494 38 1 NC_003454:FN1531|3end_Negative_regulator_of_murein_hydrolase_44236..44386_NEGATIVE 443 541 503 38 4 NC_003454:FN1448|3end_Hypothetical_cytosolic_protein_2117403..2117553_NEGATIVE 438 500 451 77 27 NC_003454:FN1996|3end_Transporter_499742..499892_POSITIVE 424 500 458 42 1 NC_003454:FN2053|3end_Serine/threonine_sodium_symporter_561228..561378_NEGATIVE 396 485 442 77 34 NC_003454:FN1235|3end_Ankyrin_repeat_proteins_1892428..1892578_POSITIVE 377 485 447 75 41 NC_003454:FN0723|3end_hypothetical_protein_1383464..1383614_POSITIVE 354 500 456 45 1 NC_003454:FN1843|3end_Surface_antigen_333468..333618_POSITIVE 329 546 506 38 3 NC_003454:FN1410|3end_Transporter_2070505..2070655_POSITIVE 261 595 551 150 104 NC_003454:FN1232|3end_Transcriptional_regulator,_MarR_family_1889000..1889150_NEGATIVE 236 520 472 146 99 NC_003454:FN0020|3end_Heat_shock_protein_15_659989..660139_POSITIVE 234 535 507 90 62 NC_003454:FN1905|3end_168_kDa_surface-layer_protein_precursor_393653..393803_NEGATIVE