Origin IGS: ttttctatgaagttaaaactatcattaagctctttatatgatgtagaaacttttataaaagatagttatttatatatattaaagattctgaaactaatgaatggactagagaagatggaaagaaaataataccagaatttcaaaaattaataaataaaataaataattttaaattaatatatgatggaattaaaagtaatattaaattaattgatttaagtgaaaaagatgggaattatatagttgataaaaagacttttttacccattgactcagatgtcataatcaaatttgatttaaatcatagtttaaaggaaagtatagttgttaatataaaatactctaatgtaaataatattaaagaaataaaacttcctaaggaaatcctagaagcaagaattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaattaattaaatttttaatatgtctaaaaaaggtactcatatgtactgcacctccaatcttgtgtccaagattttgggtgcagttcacatacttgagtaccttttctttttaaaaaataaaaatggcactttataaaatttgtgtcattttatagtctaaaacttttaattaattcttgcttctaggatttccttaggaagttttatttctttaatattatttacattagagtattttatattaacaactatactttcctttaaactatgatttaaatcaaatttgattatgacatctgagtcaatgggtaaaaaagtctttttatcaactatataattcccatctttttcacttaaatcaattaatttaatattacttttaattccatcatatattaatttaaaattatttattttatttattaatttttgaaattctggtattattttctttccatcttctctagtccattcattagtttcagaatctttaatatatataaataactatcttttataaaagtttctacatcatataaagagcttaatgatagttttaacttcatagaaaa Mask Tandem Repeat Region ================================================ ttttctatgaagttaaaactatcattaagctctttatatgatgtagaaacttttataaaagatagttatttatatatattaaagattctgaaactaatgaatggactagagaagatggaaagaaaataataccagaatttcaaaaattaataaataaaataaataattttaaattaatatatgatggaattaaaagtaatattaaattaattgatttaagtgaaaaagatgggaattatatagttgataaaaagacttttttacccattgactcagatgtcataatcaaatttgatttaaatcatagtttaaaggaaagtatagttgttaatataaaatactctaatgtaaataatattaaagaaataaaacttcctaaggaaatcctagaagcaagaattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Find is-nt database================================================ Query_seq: FN1018:FN1019|FN1018:FN1019:hypothetical protein:3-hydroxybutyryl-CoA dehydrogenase:<-<-:1672460..1673034 575 ttttctatgaagttaaaactatcattaagctctttatatgatgtagaaacttttataaaagatagttatttatatatattaaagattctgaaactaatgaatggactagagaagatggaaagaaaataataccagaatttcaaaaattaataaataaaataaataattttaaattaatatatgatggaattaaaagtaatattaaattaattgatttaagtgaaaaagatgggaattatatagttgataaaaagacttttttacccattgactcagatgtcataatcaaatttgatttaaatcatagtttaaaggaaagtatagttgttaatataaaatactctaatgtaaataatattaaagaaataaaacttcctaaggaaatcctagaagcaagaattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1018:FN1019|FN1018:FN1019:hypothetical protein:3-hydroxybutyryl-CoA dehydrogenase:<-<-:1672460..1673034 575 ttttctatgaagttaaaactatcattaagctctttatatgatgtagaaacttttataaaagatagttatttatatatattaaagattctgaaactaatgaatggactagagaagatggaaagaaaataataccagaatttcaaaaattaataaataaaataaataattttaaattaatatatgatggaattaaaagtaatattaaattaattgatttaagtgaaaaagatgggaattatatagttgataaaaagacttttttacccattgactcagatgtcataatcaaatttgatttaaatcatagtttaaaggaaagtatagttgttaatataaaatactctaatgtaaataatattaaagaaataaaacttcctaaggaaatcctagaagcaagaattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1018:FN1019|FN1018:FN1019:hypothetical protein:3-hydroxybutyryl-CoA dehydrogenase:<-<-:1672460..1673034 575 ttttctatgaagttaaaactatcattaagctctttatatgatgtagaaacttttataaaagatagttatttatatatattaaagattctgaaactaatgaatggactagagaagatggaaagaaaataataccagaatttcaaaaattaataaataaaataaataattttaaattaatatatgatggaattaaaagtaatattaaattaattgatttaagtgaaaaagatgggaattatatagttgataaaaagacttttttacccattgactcagatgtcataatcaaatttgatttaaatcatagtttaaaggaaagtatagttgttaatataaaatactctaatgtaaataatattaaagaaataaaacttcctaaggaaatcctagaagcaagaattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 48 Max: 398 Len: 351 Subject: UniRef90_Q8R5W6 Cluster: Hypothetical Exported Protein; n=1; Fusobacterium nucleatum subsp. nucleatum|Rep: Hypothetical Exported Protein - Fusobacterium nucleatum subsp. nucleatum HSP 1 e-value: 1.0E-11 bit: 71.6 Len: 330 Query Start:69 Query End:398 Subject Strand: null Subject Start: 105 Subject End: 245 .................................................................... F I Y I K D S E T N E W T R E D G K K I I P E F Q K L I N K I N N F K L I Y D G I K S N I K L I D L S E K D G N Y I - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V D K K T F L P I D S D V I I K F D L N H S L K E S I V V N I K Y S N V N N I K E I K L P K E I L E A R ................................................................................................................................................................................. .................................................................... Y S Y V Q S P T D N Q W I K Q S N K G F E E Q F K K A Y A Q S N - - - A L Y D F F M K N L D K I D L S E K D G N Y L L T I K D F K E I L K K E F S A L D P T G K G L D G F E D L I L T F T V D K K T F L P V N F T M V G A V N - E G G I K M N F S F D V K Y S N I N N V K E I I I P K E A L E A K ................................................................................................................................................................................. Subject: UniRef90_Q7P5I0 Cluster: Hypothetical protein FNV0974; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: Hypothetical protein FNV0974 - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 2.0E-9 bit: 64.7 Len: 351 Query Start:48 Query End:398 Subject Strand: null Subject Start: 81 Subject End: 228 ............................................... N F Y K R * L F I Y I K D S E T N E W T R E D G K K I I P E F Q K L I N K I N N F K L I Y D G I K S N I K L I D L S E K D G N Y I - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V D K K T F L P I D S D V - - I I K F D L N H S L K E S I V V N I K Y S N V N N I K E I K L P K E I L E A R ................................................................................................................................................................................. ............................................... S M Y M K D G Y S Y V Q N P N D N Q W I K Q S N K G F G E Q F T K L Y A Q S N - - - A M Y D F F L K N I D K I D L K E K G G N Y L L I I K N F K D L F K D D L K S L N I P E S Q L D M F N D I S M T F E I D K K T F L P I T F T M S G A I K V E - - - N I K M D F A F D A K Y S N I D N V K E I I V P K E A L E A K ................................................................................................................................................................................. ttttctatgaagttaaaactatcattaagctctttatatgatgtagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 7 End: 126 ...... M K L K L S L S S L Y D V E T F I K D S Y L Y I L K I L K L M N G L E K M E R K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 72 End: 404 ....................................................................... M Y I K D S E T N E W T R E D G K K I I P E F Q K L I N K I N N F K L I Y D G I K S N I K L I D L S E K D G N Y I V D K ........................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 439 End: 546 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K C H F Y F L K R K G T Q V C E L H P K S W T Q D W R C S T Y E Y L F ............................. Protein_Len: 30 Strand: + Start: 485 End: 574 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N C T Q N L G H K I G G A V H M S T F F R H I K N L I N F . Protein_Len: 35 Strand: - Start: 463 End: 567 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F S F T S L Y T F Q V W F R P C L I P P A T C I L V K K L C I L F K M ........ Protein_Len: 41 Strand: - Start: 440 End: 562 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................... L T G N K N K L F F L Y E L I H V A G L I K S V L N S T C Y M H T G K K S M N F M ............. Protein_Len: 32 Strand: - Start: 305 End: 400 ................................................................................................................................................................................................................................................................................................................ L K F S L I T T L I F Y E L T F L I L S I F S G L S I R S A L M ............................................................................................................................................................................... ttttctatgaagttaaaactatcattaagctctttatatgatgtagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 126 End: 155 .............................................................................................................................ATTTATTAATTTTTGAAATTCTGGTATTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttttctatgaagttaaaactatcattaagctctttatatgatgtagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 54 HP_score: -2.4 Tail_Score: -4.50686 Start: 155 End: 171 Full_Region: catcatatattaatt taaaat tattt atttta tttattaatttttga ..........................................................................................................................................................taaaattatttatttta.................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -4.1 Tail_Score: -5.20222 Start: 372 End: 384 Full_Region: ttcttgcttctagga tttcc tta ggaag ttttatttctttaat ...................................................................................................................................................................................................................................................................................................................................................................................tttccttaggaag............................................................................................................................................................................................... TransTerm Strand: - Conf: 78 HP_score: -10.1 Tail_Score: -2.76456 Start: 484 End: 533 Full_Region: taaaaaaggtactca tatgtactgcacctccaatcttg tgtc caagattttgggtgcagttcaca tacttgagtaccttt ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgtactgcacctccaatcttgtgtccaagattttgggtgcagttcaca.......................................... Find igs database================================================ Query_seq: FN1018:FN1019|FN1018:FN1019:hypothetical protein:3-hydroxybutyryl-CoA dehydrogenase:<-<-:1672460..1673034 575 ttttctatgaagttaaaactatcattaagctctttatatgatgtagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta Intra-Species Hit: Count: 1 Min: 1 Max: 575 Len: 575 Subject: NC_003454_FN1018_FN1019|hypothetical protein:3-hydroxybutyryl-CoA dehydrogenase|NEGATIVE:NEGATIVE|[1672460,1673034]|575 HSP 1 e-value: 5.0E-74 bit: 280.0 Len: 177 Query Start:399 Query End:575 Subject Strand: POSITIVE Subject Start: 399 Subject End: 575 ..............................................................................................................................................................................................................................................................................................................................................................................................................attaattaaaagttttagactataaaatgacacaaattttataaagtgccannnnnnnnnnnnaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta ..............................................................................................................................................................................................................................................................................................................................................................................................................attaattaaaagttttagactataaaatgacacaaattttataaagtgccatttttattttttaaaaagaaaaggtactcaagtatgtgaactgcacccaaaatcttggacacaagattggaggtgcagtacatatgagtaccttttttagacatattaaaaatttaattaatttta HSP 2 e-value: 6.0E-18 bit: 93.7 Len: 47 Query Start:1 Query End:47 Subject Strand: POSITIVE Subject Start: 1 Subject End: 47 ttttctatgaagttaaaactatcattaagctctttatatgatgtaga................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ttttctatgaagttaaaactatcattaagctctttatatgatgtaga................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUCUAUGAAGUUAAAACUAUCAUUAAGCUCUUUAUAUGAUGUAGAAACUUUUAUAAAAGAUAGUUAUUUAUAUAUAUUAAAGAUUCUGAAACUAAUGAAUGGACUAGAGAAGAUGGAAAGAAAAUAAUACCAGAAUUUCAAAAAUUAAUAAAUAAAAUAAAUAAUUUUAAAUUAAUAUAUGAUGGAAUUAAAAGUAAUAUUAAAUUAAUUGAUUUAAGUGAAAAAGAUGGGAAUUAUAUAGUUGAUAAAAAGACUUUUUUACCCAUUGACUCAGAUGUCAUAAUCAAAUUUGAUUUAAAUCAUAGUUUAAAGGAAAGUAUAGUUGUUAAUAUAAAAUACUCUAAUGUAAAUAAUAUUAAAGAAAUAAAACUUCCUAAGGAAAUCCUAGAAGCAAGAAUUAAUUAAAAGUUUUAGACUAUAAAAUGACACAAAUUUUAUAAAGUGCCAUUUUUAUUUUUUAAAAAGAAAAGGUACUCAAGUAUGUGAACUGCACCCAAAAUCUUGGACACAAGAUUGGAGGUGCAGUACAUAUGAGUACCUUUUUUAGACAUAUUAAAAAUUUAAUUAAUUUUA .(((((..((((((..(((((((.......((((((....(((((((((((.((......)).)))).)))))))....))))))((((.((((((.(((...(((..(((..(((((.......(((((.(((...(((((.((((((((...((((((.....))))))..(((((((..................)))))))....))))))))...)))))....)))..)))))..((((........)))).......)))))..)))....)))..(((((....)))))....)))))))))...)))).).)))))).(((((((....(((......)))....)))))))........))))))...(((....))))))))..(((((((((((((..(((((((..((((((((.(((............))).)).))))))..)))))))((((((((((((((..(((((..((((((((...(((((((....)))))))...)))))))))))))))))))))))))))..............))))))))))))). (-120.17) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAUUAAUUAAAUUUUUAAUAUGUCUAAAAAAGGUACUCAUAUGUACUGCACCUCCAAUCUUGUGUCCAAGAUUUUGGGUGCAGUUCACAUACUUGAGUACCUUUUCUUUUUAAAAAAUAAAAAUGGCACUUUAUAAAAUUUGUGUCAUUUUAUAGUCUAAAACUUUUAAUUAAUUCUUGCUUCUAGGAUUUCCUUAGGAAGUUUUAUUUCUUUAAUAUUAUUUACAUUAGAGUAUUUUAUAUUAACAACUAUACUUUCCUUUAAACUAUGAUUUAAAUCAAAUUUGAUUAUGACAUCUGAGUCAAUGGGUAAAAAAGUCUUUUUAUCAACUAUAUAAUUCCCAUCUUUUUCACUUAAAUCAAUUAAUUUAAUAUUACUUUUAAUUCCAUCAUAUAUUAAUUUAAAAUUAUUUAUUUUAUUUAUUAAUUUUUGAAAUUCUGGUAUUAUUUUCUUUCCAUCUUCUCUAGUCCAUUCAUUAGUUUCAGAAUCUUUAAUAUAUAUAAAUAACUAUCUUUUAUAAAAGUUUCUACAUCAUAUAAAGAGCUUAAUGAUAGUUUUAACUUCAUAGAAAA ...(((((((((((.(((((..........((((((((((((((((((((((((((..(((((((....)))))))..)))))))))..)))))..))))))))))))..............((((((((((............))))))))))......)))))..)))))))))))...(((((((((....)))..))))))....(((((((((.(((((...((((.((((.((((((((..........(((((...........((((((((..............((((......))))...((((((((....))))))))..........................)))))))).((((.(((((((..................))))))).))))..((((((((......((((((.((((((((((.(((.((((..................)))))))......))))))))))...))))))...))))))))............))))).........)))))))).))))))))))))).))))......))))). (-107.85) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 825 528 484 71 27 NC_003454:FN0839|5end_hypothetical_protein_1501426..1501656_NEGATIVE 754 528 486 201 159 NC_003454:FN1444|5end_GMP_synthase_[glutamine-hydrolyzing]_2111585..2111815_POSITIVE 743 130 81 221 172 NC_003454:FN1018|5end_hypothetical_protein_1672369..1672599_NEGATIVE 361 534 491 228 185 NC_003454:FN1972|5end_hypothetical_protein_472071..472301_NEGATIVE 348 533 491 140 98 NC_003454:FN0840|5end_Transposase_1501361..1501591_POSITIVE 348 533 491 142 100 NC_003454:FN0135|5end_Transposase_770238..770468_POSITIVE 342 528 484 208 167 NC_003454:FN0210|5end_Transcriptional_regulator,_COPG_family_836998..837228_POSITIVE 341 540 491 146 99 NC_003454:FN1887|5end_Transposase_371671..371901_POSITIVE 337 528 482 137 88 NC_003454:FN1443|5end_Transposase_2111518..2111748_NEGATIVE 337 528 482 137 88 NC_003454:FN0786|5end_Transposase_1442465..1442695_POSITIVE 333 528 483 135 94 NC_003454:FN0485|5end_Transposase_1130267..1130497_POSITIVE 330 533 491 129 87 NC_003454:FN1446|5end_Transposase_2116033..2116263_POSITIVE 278 37 3 180 142 NC_003454:FN1009|5end_hypothetical_protein_1663950..1664180_NEGATIVE 245 506 466 227 187 NC_003454:FN0234|5end_hypothetical_protein_859499..859729_NEGATIVE 242 548 509 62 25 NC_003454:FN0322|5end_fructose-bisphosphate_aldolase_959613..959843_POSITIVE 237 528 490 114 75 NC_003454:FN0068|5end_Lipoprotein_signal_peptidase_707308..707538_POSITIVE 233 553 512 130 76 NC_003454:FN1905|5end_168_kDa_surface-layer_protein_precursor_398116..398346_NEGATIVE 220 39 1 231 195 NC_003454:FN1039|5end_Branched-chain_amino_acid_transport_protein_azlC_1690997..1691227_POSITIVE 218 531 496 151 109 NC_003454:FN1754|5end_thiazole_synthase_251117..251347_NEGATIVE 211 254 217 216 172 NC_003454:FN0358|5end_ATP_synthase_subunit_B_989674..989904_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 771 528 483 88 45 NC_003454:FN1904|3end_Transcriptional_regulator,_MarR_family_393633..393783_POSITIVE 732 528 487 81 40 NC_003454:FN1463|3end_pyridoxine_biosynthesis_protein_2145924..2146074_POSITIVE 635 528 487 79 38 NC_003454:FN1499|3end_Cell_surface_protein_5166..5316_POSITIVE 538 528 482 77 30 NC_003454:FN1498|3end_Integral_membrane_protein_3542..3692_POSITIVE 438 528 487 80 39 NC_003454:FN1464|3end_1-deoxy-D-xylulose-5-phosphate_synthase_2145954..2146104_NEGATIVE 426 528 483 76 31 NC_003454:FN1546|3end_translation_elongation_factor_EF-G_59529..59679_NEGATIVE 423 528 483 67 22 NC_003454:FN0177|3end_Cell_division_inhibitor_MinE_802336..802486_POSITIVE 420 530 486 77 28 NC_003454:FN1547|3end_PTS_permease_for_N-acetylglucosamine_and_glucose_61801..61951_NEGATIVE 394 528 485 74 28 NC_003454:FN0235|3end_ABC_transporter_ATP-binding_protein_859674..859824_NEGATIVE 390 532 491 87 46 NC_003454:FN1905|3end_168_kDa_surface-layer_protein_precursor_393653..393803_NEGATIVE 378 530 481 82 32 NC_003454:FN1221|3end_hypothetical_protein_1881290..1881440_POSITIVE 378 529 483 85 45 NC_003454:FN0436|3end_Urea_carboxylase_1077851..1078001_NEGATIVE 369 528 485 83 38 NC_003454:FN1143|3end_glucosamine-6-phosphate_deaminase_1793365..1793515_POSITIVE 361 534 491 69 26 NC_003454:FN1973|3end_Translation_initiation_inhibitor_472230..472380_NEGATIVE 341 540 491 149 102 NC_003454:FN1886|3end_hypothetical_protein_371754..371904_POSITIVE 333 528 483 60 19 NC_003454:FN0484|3end_Lipase_1130272..1130422_POSITIVE 328 528 483 83 40 NC_003454:FN1545|3end_Ferredoxin_like_protein_59497..59647_POSITIVE 327 528 486 85 43 NC_003454:FN1500|3end_Nickel_transport_ATP-binding_protein_nikE_5193..5343_NEGATIVE 324 528 483 78 38 NC_003454:FN0981|3end_phosphoribosylamine--glycine_ligase_1632840..1632990_NEGATIVE 298 528 483 79 34 NC_003454:FN1719|3end_hypothetical_protein_218747..218897_POSITIVE