Origin IGS: aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcattaacaggctctaataaatatgaacaaatcacattaggtagagcttttaacatagatgataaattatcattttcagtagcagctagagttgtacatggtacaagaagattaaatggtaacttaaatataggtgctaatccaactgcacaatataaacaagaaaaagctcaacaagtagcacaagaagttagcaaagca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgctttgctaacttcttgtgctacttgttgagctttttcttgtttatattgtgcagttggattagcacctatatttaagttaccatttaatcttcttgtaccatgtacaactctagctgctactgaaaatgataatttatcatctatgttaaaagctctacctaatgtgatttgttcatatttattagagcctgttaatgatgaacctttatcatagattcccaatggtttgaattgagctaagtcagttaaaacatcaactcctgatacaccatcatatctcaattttccccctccagcaagtccaccaaaattaaaaaaagtagctcctttatcatccacaaatgttaaagcaatatttggaattgcttggtttaagtttgctttatgttcttttcctttataagacattttttcatgcccatgtgcaaactgaaaacctgcatgtaaatattttcccttttctaatcttccaagagcagctggattgtaataaggagatactccattaatcattcctgtttgtgcttggttagctagatagtctggactatatgtttgaatatgatctattgatgcagcatataacccacttgacaatattgctgttagcaataataattttttcattttttccctccatatgtattttgtaaatacactttctctaaaaataatataacatacataatataacagatgtttttttggttgtcaattatgtt Mask Tandem Repeat Region ================================================ aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcattaacaggctctaataaatatgaacaaatcacattaggtagagcttttaacatagatgataaattatcattttcagtagcagctagagttgtacatggtacaagaagattaaatggtaacttaaatataggtgctaatccaactgcacaatataaacaagaaaaagctcaacaagtagcacaagaagttagcaaagca Find is-nt database================================================ Query_seq: FN1002:FN1003|FN1002:FN1003:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Outer membrane protein P1 precursor:->->:1658237..1658961 725 aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcattaacaggctctaataaatatgaacaaatcacattaggtagagcttttaacatagatgataaattatcattttcagtagcagctagagttgtacatggtacaagaagattaaatggtaacttaaatataggtgctaatccaactgcacaatataaacaagaaaaagctcaacaagtagcacaagaagttagcaaagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN1002:FN1003|FN1002:FN1003:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Outer membrane protein P1 precursor:->->:1658237..1658961 725 aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcattaacaggctctaataaatatgaacaaatcacattaggtagagcttttaacatagatgataaattatcattttcagtagcagctagagttgtacatggtacaagaagattaaatggtaacttaaatataggtgctaatccaactgcacaatataaacaagaaaaagctcaacaagtagcacaagaagttagcaaagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN1002:FN1003|FN1002:FN1003:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Outer membrane protein P1 precursor:->->:1658237..1658961 725 aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcattaacaggctctaataaatatgaacaaatcacattaggtagagcttttaacatagatgataaattatcattttcagtagcagctagagttgtacatggtacaagaagattaaatggtaacttaaatataggtgctaatccaactgcacaatataaacaagaaaaagctcaacaagtagcacaagaagttagcaaagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 528 Max: 725 Len: 198 Subject: UniRef90_Q7P3H3 Cluster: Outer membrane protein P1; n=2; Fusobacterium nucleatum|Rep: Outer membrane protein P1 - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 198 Query Start:528 Query End:725 Subject Strand: null Subject Start: 1 Subject End: 66 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L T G S N K Y E Q I T L G R A F N I D D K L S F S V A A R V V H G T R R L N G N L N I G A N P T A Q Y K Q E K A Q Q V A Q E V S K A ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T G S N K Y E Q I T L G R A F N I D D K L S F S I A G R V V H G T R K L N G S L N I G V N P T A Q Y R Q E K A Q Q V A Q E V S R A aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 4 End: 96 ... M I D N Q K N I C Y I M Y V I L F L E K V Y L Q N T Y G G K K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 68 End: 172 ................................................................... M Y K I H M E G K N E K I I I A N S N I V K W V I C C I N R S Y S N I ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 27 End: 725 .......................... M L Y Y V C Y I I F R E S V F T K Y I W R E K M K K L L L L T A I L S S G L Y A A S I D H I Q T Y S P D Y L A N Q A Q T Protein_Len: 48 Strand: - Start: 512 End: 655 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S L P E D N V P E L L Y S C I V N P L A K L M S S L N D N E T A A L T T C P V L L N F P L K F M ...................................................................... Protein_Len: 55 Strand: - Start: 217 End: 381 ........................................................................................................................................................................................................................ H L I E K N C D L Q E Q F I L F P F I N V H L N E T Q V H A H F F T K Y L F L V Y L L S L G L L E L Y Q K L M ........................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 73 End: 180 ........................................................................ L I C I S P F F S F I I I A L L L I T L H T I H Q M L L D Y E F M Y D M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 47 End: 154 .............................................. I I K L S L T N V F Y M H L S F I F F N N N S V A I N D L P N Y A A D M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 89 Start: 7 End: 36 ......ATTGACAACCAAAAAAACATCTGTTATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 104 End: 133 .......................................................................................................CTTGACAATATTGCTGTTAGCAATAATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 71 HP_score: -8.1 Tail_Score: -3.33969 Start: 109 End: 125 Full_Region: AAATGAAAAAATTAT TATTGCT AAC AGCAATA TTGTCAAGTGGGTTA ............................................................................................................TATTGCTAACAGCAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 47 HP_score: -2.3 Tail_Score: -3.74347 Start: 357 End: 373 Full_Region: GCAAACTTAAACCAA GCAAT TCCAAAT ATTGC TTTAACATTTGTGGA ....................................................................................................................................................................................................................................................................................................................................................................GCAATTCCAAATATTGC................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 47 HP_score: -2.3 Tail_Score: -3.59293 Start: 357 End: 373 Full_Region: tccacaaatgttaaa gcaat atttgga attgc ttggtttaagtttgc ....................................................................................................................................................................................................................................................................................................................................................................gcaatatttggaattgc................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: FN1002:FN1003|FN1002:FN1003:Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Outer membrane protein P1 precursor:->->:1658237..1658961 725 aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggagggaaaaaatgaaaaaattattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 527 Len: 527 Subject: NC_003454_FN1002_FN1003|Adenosylmethionine-8-amino-7-oxononanoate aminotransferase:Outer membrane protein P1 precursor|POSITIVE:POSITIVE|[1658237,1658961]|725 HSP 1 e-value: 0.0 bit: 797.0 Len: 423 Query Start:105 Query End:527 Subject Strand: POSITIVE Subject Start: 105 Subject End: 527 ........................................................................................................ttattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctacnnnnnnnaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatca...................................................................................................................................................................................................... ........................................................................................................ttattattgctaacagcaatattgtcaagtgggttatatgctgcatcaatagatcatattcaaacatatagtccagactatctagctaaccaagcacaaacaggaatgattaatggagtatctccttattacaatccagctgctcttggaagattagaaaagggaaaatatttacatgcaggttttcagtttgcacatgggcatgaaaaaatgtcttataaaggaaaagaacataaagcaaacttaaaccaagcaattccaaatattgctttaacatttgtggatgataaaggagctactttttttaattttggtggacttgctggagggggaaaattgagatatgatggtgtatcaggagttgatgttttaactgacttagctcaattcaaaccattgggaatctatgataaaggttcatca...................................................................................................................................................................................................... HSP 2 e-value: 6.0E-31 bit: 137.0 Len: 90 Query Start:1 Query End:90 Subject Strand: POSITIVE Subject Start: 1 Subject End: 90 aacataattgacaaccnnnnnnncatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggaggg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aacataattgacaaccaaaaaaacatctgttatattatgtatgttatattatttttagagaaagtgtatttacaaaatacatatggaggg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACAUAAUUGACAACCAAAAAAACAUCUGUUAUAUUAUGUAUGUUAUAUUAUUUUUAGAGAAAGUGUAUUUACAAAAUACAUAUGGAGGGAAAAAAUGAAAAAAUUAUUAUUGCUAACAGCAAUAUUGUCAAGUGGGUUAUAUGCUGCAUCAAUAGAUCAUAUUCAAACAUAUAGUCCAGACUAUCUAGCUAACCAAGCACAAACAGGAAUGAUUAAUGGAGUAUCUCCUUAUUACAAUCCAGCUGCUCUUGGAAGAUUAGAAAAGGGAAAAUAUUUACAUGCAGGUUUUCAGUUUGCACAUGGGCAUGAAAAAAUGUCUUAUAAAGGAAAAGAACAUAAAGCAAACUUAAACCAAGCAAUUCCAAAUAUUGCUUUAACAUUUGUGGAUGAUAAAGGAGCUACUUUUUUUAAUUUUGGUGGACUUGCUGGAGGGGGAAAAUUGAGAUAUGAUGGUGUAUCAGGAGUUGAUGUUUUAACUGACUUAGCUCAAUUCAAACCAUUGGGAAUCUAUGAUAAAGGUUCAUCA .......((((((.(((........((((..(((.((((.....)))).)))...))))....(((((((.....))))))).)))......................((((((.....)))))).))))))...((((...((.(((((((...((((((.(((......(((((....)))))...(((.....))).......)))))))))......(((((((.......(..((((((...(((...((((((((((((((.......(((((((.(((((((..(((((((....((((((......))))))......(........).....))))))).))))).((((((.......))))))..........)).))).)))).......))))))))))))))...)))...))))))..)........)))))))..))))))).)).(((((((.(((......))))))))))......)))).....((((((.......)))))).... (-116.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUGAACCUUUAUCAUAGAUUCCCAAUGGUUUGAAUUGAGCUAAGUCAGUUAAAACAUCAACUCCUGAUACACCAUCAUAUCUCAAUUUUCCCCCUCCAGCAAGUCCACCAAAAUUAAAAAAAGUAGCUCCUUUAUCAUCCACAAAUGUUAAAGCAAUAUUUGGAAUUGCUUGGUUUAAGUUUGCUUUAUGUUCUUUUCCUUUAUAAGACAUUUUUUCAUGCCCAUGUGCAAACUGAAAACCUGCAUGUAAAUAUUUUCCCUUUUCUAAUCUUCCAAGAGCAGCUGGAUUGUAAUAAGGAGAUACUCCAUUAAUCAUUCCUGUUUGUGCUUGGUUAGCUAGAUAGUCUGGACUAUAUGUUUGAAUAUGAUCUAUUGAUGCAGCAUAUAACCCACUUGACAAUAUUGCUGUUAGCAAUAAUAAUUUUUUCAUUUUUUCCCUCCAUAUGUAUUUUGUAAAUACACUUUCUCUAAAAAUAAUAUAACAUACAUAAUAUAACAGAUGUUUUUUUGGUUGUCAAUUAUGUU ((((((....))))))..(((..((((((((((.....))))))........((((((((......(((......(((((((.((((.............(((((((((.....(((((....((((.(((((((((.(((((....((((..........((((((.(((..(((((.(((((((...((((.(((.........))))))).....(((....))).)))))))..))))).))).................)))))).........))))..))))).)))..)))))).))))...))))).....(((((((.(((.....))))))))))..))))))...)))))))))))))).(((((..((((((....................))))))...))))).........))).............(((((((.(((((......................))))).)))))))........)))))))).))))..)))......... (-96.49) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 280 479 431 163 108 NC_003454:FN1833|5end_Biopolymer_transport_exbD_protein_322566..322796_NEGATIVE 274 435 393 183 147 NC_003454:FN1904|5end_Transcriptional_regulator,_MarR_family_393107..393337_POSITIVE 267 269 222 73 21 NC_003454:FN1825|5end_hypothetical_protein_313994..314224_POSITIVE 254 157 118 222 189 NC_003454:FN1977|5end_Cell_cycle_protein_MesJ_478136..478366_POSITIVE 252 159 119 49 17 NC_003454:FN0201|5end_Glutaconyl-COA_decarboxylase_beta_subunit_826542..826772_POSITIVE 244 230 185 74 29 NC_003454:FN1148|5end_Serine/threonine_sodium_symporter_1798012..1798242_POSITIVE 242 328 281 182 135 NC_003454:FN0852|5end_Hydrolase_1510224..1510454_POSITIVE 242 311 271 182 142 NC_003454:FN1719|5end_hypothetical_protein_217948..218178_POSITIVE 241 254 223 88 55 NC_003454:FN0068|5end_Lipoprotein_signal_peptidase_707308..707538_POSITIVE 240 258 226 69 36 NC_003454:FN1806|5end_Integral_membrane_protein_287724..287954_POSITIVE 239 453 411 209 176 NC_003454:FN2084|5end_Permease_595708..595938_POSITIVE 239 196 157 184 140 NC_003454:FN1750|5end_Pyruvate-flavodoxin_oxidoreductase_247811..248041_POSITIVE 234 199 168 108 71 NC_003454:FN1691|5end_Hypothetical_membrane-spanning_protein_187780..188010_NEGATIVE 233 269 226 60 16 NC_003454:FN1594|5end_Nitrogen_fixation_protein_RNFG_104893..105123_NEGATIVE 228 229 185 64 15 NC_003454:FN0147|5end_fatty_acid/phospholipid_synthesis_protein_775462..775692_POSITIVE 226 474 434 231 186 NC_003454:FN2097|5end_hypothetical_protein_606853..607083_NEGATIVE 223 450 403 137 99 NC_003454:FN1862|5end_L-beta-lysine_5,6-aminomutase_beta_subunit_353122..353352_NEGATIVE 222 213 175 51 3 NC_003454:FN1989|5end_Sodium-dependent_tyrosine_transporter_492431..492661_POSITIVE 221 260 224 141 95 NC_003454:FN0281|5end_DNA_polymerase_III_alpha_subunit_912129..912359_NEGATIVE 219 158 111 70 25 NC_003454:FN1646|5end_SSU_ribosomal_protein_S10P_141760..141990_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 252 159 119 34 2 NC_003454:FN0200|3end_Biotin_carboxyl_carrier_protein_of_glutaconyl-COA_decarboxylase_826607..826757_POSITIVE 246 198 154 142 102 NC_003454:FN1392|3end_SSU_ribosomal_protein_S16P_2049196..2049346_NEGATIVE 243 467 426 78 44 NC_003454:FN0995|3end_hypothetical_protein_1650672..1650822_POSITIVE 242 328 281 146 99 NC_003454:FN0851|3end_Biotin_synthesis_protein_bioC_1510268..1510418_POSITIVE 242 311 271 142 102 NC_003454:FN1718|3end_translocase_217988..218138_POSITIVE 241 254 223 118 85 NC_003454:FN0067|3end_Isoleucyl-tRNA_synthetase_707418..707568_POSITIVE 234 199 168 105 68 NC_003454:FN1692|3end_Glycosyl_transferase_187783..187933_NEGATIVE 233 269 226 70 26 NC_003454:FN1595|3end_Na(+)-translocating_NADH-quinone_reductase_subunit_B_104883..105033_NEGATIVE 232 431 404 115 86 NC_003454:FN0555|3end_Transcriptional_regulator,_MerR_family_1208332..1208482_POSITIVE 227 440 394 130 93 NC_003454:FN0171|3end_Hypothetical_cytosolic_protein_796921..797071_POSITIVE 223 450 403 137 99 NC_003454:FN1863|3end_L-beta-lysine_5,6-aminomutase_alpha_subunit_353122..353272_NEGATIVE 221 484 447 57 15 NC_003454:FN1834|3end_Biopolymer_transport_exbB_protein_322676..322826_NEGATIVE 219 433 398 147 115 NC_003454:FN1596|3end_Nitrogen_fixation_iron-sulphur_protein_RNFC_105853..106003_NEGATIVE 218 176 135 149 105 NC_003454:FN2056|3end_hypothetical_protein_564763..564913_NEGATIVE 217 52 22 67 34 NC_003454:FN1575|3end_Hypothetical_cytosolic_protein_86193..86343_NEGATIVE 213 468 423 80 40 NC_003454:FN1352|3end_ABC_transporter_ATP-binding_protein_2003506..2003656_NEGATIVE 209 328 302 65 37 NC_003454:FN0859|3end_hypothetical_protein_1520720..1520870_NEGATIVE 207 466 430 151 105 NC_003454:FN1344|3end_hypothetical_protein_1998034..1998184_POSITIVE 207 258 224 149 108 NC_003454:FN0282|3end_hypothetical_protein_912116..912266_NEGATIVE 206 426 381 149 108 NC_003454:FN0466|3end_Lysyl-tRNA_synthetase_1112862..1113012_POSITIVE