Origin IGS: gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aactatatttttacctcttaatccaacttcatcatattttaaatcaaaaccatctgttgcatataaatttctttcatctaaattaaaataaactttggaaaaagttcctgacatttctttatcatttttattaatactattatttggaatatctttaacatctttaagagtgttaatatccccaacttctccaatcccatttgataatcttatatttccttcaagtattattattttactagagttattataatttgccttatcagctaaaatagaaaataatttatttttaataactactccatcttccaatgttatattatccatagaaatagtagttttaaatttatttgctaaaacctctatacccttttcctcatttttggcatacataggttttgtagagataagttcttgggttgttttatcatactttaattcagaagctttaatttcccaaccatttgggcttatacctaaaatatttgtatccaaagttaagtttctatctttatcaagaaatacattatctccacttagaagcattccttgtattttagcttttgctttttcaaatttactttctttttcatctaaatagtcaatttctttttcagcctctacatgatagtcatcactttcataaactgcattaattgtttctactattttttttatatctccaacttctttatcagaaccaaaatagttaaagtaacctaaaactactgctattactcccatagctatgtatattatttttttc Mask Tandem Repeat Region ================================================ gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Find is-nt database================================================ Query_seq: FN0693:FN0694|FN0693:FN0694:DNA mismatch repair protein:S-layer protein:->->:1350227..1350992 766 gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN0693:FN0694|FN0693:FN0694:DNA mismatch repair protein:S-layer protein:->->:1350227..1350992 766 gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN0693:FN0694|FN0693:FN0694:DNA mismatch repair protein:S-layer protein:->->:1350227..1350992 766 gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 567 End: 686 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G L E K L G I L T L L K M L K I F Q I I V L I K M I K K C Q E L F P K F I L I ................................................................................ Protein_Len: 60 Strand: + Start: 8 End: 766 ....... M I Y I A M G V I A V V L G Y F N Y F G S D K E V G D I K K I V E T I N A V Y E S D D Y H V E A E K E I D Y L D E K E S Protein_Len: 52 Strand: - Start: 517 End: 672 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L L E L L I I I S S P F I L N D F P I P S T P S I L V R L S T L S I G F L L I L L F S L S I D P V K E M .............................................................................................. Protein_Len: 31 Strand: - Start: 210 End: 302 ................................................................................................................................................................................................................. F V L F A E L H L Y H I E Q Y L Y F S L K P Y L Y K L Y L G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 169 End: 495 ........................................................................................................................................................................ L A E S N F Y S L V V W S S I E V F G I Y A L F S S F P I S T K A F L N L V V I E I S L I V N S S P T T I L F L N N E M ............................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 114 End: 203 ................................................................................................................. H L K H F H H S D H L P Q F L F Q S N L H F L F Y I Q F L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 47 End: 169 .............................................. T V K V I K T R I F F N S I Y F F Y Y F C N I C N I F T I V I M Y L S F F F N V M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 484 End: 513 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCTTATCAGCTAAAATAGAAAATAAT............................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: FN0693:FN0694|FN0693:FN0694:DNA mismatch repair protein:S-layer protein:->->:1350227..1350992 766 gaaaaaaataatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggctgaaaaagaaattgactatttagatgaaaaagaaagtaaatttgaaaaagcaaaagctaaaatacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt Intra-Species Hit: Count: 1 Min: 9 Max: 766 Len: 758 Subject: NC_003454_FN0693_FN0694|DNA mismatch repair protein:S-layer protein|POSITIVE:POSITIVE|[1350227,1350992]|766 HSP 1 e-value: 0.0 bit: 1098.0 Len: 554 Query Start:213 Query End:766 Subject Strand: POSITIVE Subject Start: 213 Subject End: 766 ....................................................................................................................................................................................................................tacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt ....................................................................................................................................................................................................................tacaaggaatgcttctaagtggagataatgtatttcttgataaagatagaaacttaactttggatacaaatattttaggtataagcccaaatggttgggaaattaaagcttctgaattaaagtatgataaaacaacccaagaacttatctctacaaaacctatgtatgccaaaaatgaggaaaagggtatagaggttttagcaaataaatttaaaactactatttctatggataatataacattggaagatggagtagttattaaaaataaattattttctattttagctgataaggcaaattataataactctagtaaaataataatacttgaaggaaatataagattatcaaatgggattggagaagttggggatattaacactcttaaagatgttaaagatattccaaataatagtattaataaaaatgataaagaaatgtcaggaactttttccaaagtttattttaatttagatgaaagaaatttatatgcaacagatggttttgatttaaaatatgatgaagttggattaagaggtaaaaatatagtt HSP 2 e-value: 4.0E-60 bit: 234.0 Len: 142 Query Start:9 Query End:150 Subject Strand: POSITIVE Subject Start: 9 Subject End: 150 ........taatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatatnnnnnnnntagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........taatatacatagctatgggagtaatagcagtagttttaggttactttaactattttggttctgataaagaagttggagatataaaaaaaatagtagaaacaattaatgcagtttatgaaagtgatgactatcatgtagaggc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUAUACAUAGCUAUGGGAGUAAUAGCAGUAGUUUUAGGUUACUUUAACUAUUUUGGUUCUGAUAAAGAAGUUGGAGAUAUAAAAAAAAUAGUAGAAACAAUUAAUGCAGUUUAUGAAAGUGAUGACUAUCAUGUAGAGGCUGAAAAAGAAAUUGACUAUUUAGAUGAAAAAGAAAGUAAAUUUGAAAAAGCAAAAGCUAAAAUACAAGGAAUGCUUCUAAGUGGAGAUAAUGUAUUUCUUGAUAAAGAUAGAAACUUAACUUUGGAUACAAAUAUUUUAGGUAUAAGCCCAAAUGGUUGGGAAAUUAAAGCUUCUGAAUUAAAGUAUGAUAAAACAACCCAAGAACUUAUCUCUACAAAACCUAUGUAUGCCAAAAAUGAGGAAAAGGGUAUAGAGGUUUUAGCAAAUAAAUUUAAAACUACUAUUUCUAUGGAUAAUAUAACAUUGGAAGAUGGAGUAGUUAUUAAAAAUAAAUUAUUUUCUAUUUUAGCUGAUAAGGCAAAUUAUAAUAACUCUAGUAAAAUAAUAAUACUUGAAGGAAAUAUAAGAUUAUCAAAUGGGAUUGGAGAAGUUGGGGAUAUUAACACUCUUAAAGAUGUUAAAGAUAUUCCAAAUAAUAGUAUUAAUAAAAAUGAUAAAGAAAUGUCAGGAACUUUUUCCAAAGUUUAUUUUAAUUUAGAUGAAAGAAAUUUAUAUGCAACAGAUGGUUUUGAUUUAAAAUAUGAUGAAGUUGGAUUAAGAGGUAAAAAUAUAGUU .....(((...(((((.((((((.....((((((((((((((..(((.((((((((..(((..((......))..)))........)))))))).)))........(((....(((((.(((....))).)))))(((((((..................(((((((..............)))))))..(((....)))..............))))))).((((((((((.((...(((((.......(((((.(((.((((..((((....))))..)))).....(((((....)))))......))).))))).......((........))....))))))))))))))))).((((((...((((((...............)))))).))))))..)))....))))))))))))))................(((((((.......(((((.((((.......(((....((((((((((((..((((((......(((((.(..(((.((((.........)))).).))..).)))))..))))))..))))).))))))).))).......)))))))))....)))))))....)))))).....)))))...........(((((......)))))....(((..(((((..((((((.((.(((((((.((((..((((.........))))..)))).))))))).)).)))))).)))))..)))..)))........... (-140.34) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACUAUAUUUUUACCUCUUAAUCCAACUUCAUCAUAUUUUAAAUCAAAACCAUCUGUUGCAUAUAAAUUUCUUUCAUCUAAAUUAAAAUAAACUUUGGAAAAAGUUCCUGACAUUUCUUUAUCAUUUUUAUUAAUACUAUUAUUUGGAAUAUCUUUAACAUCUUUAAGAGUGUUAAUAUCCCCAACUUCUCCAAUCCCAUUUGAUAAUCUUAUAUUUCCUUCAAGUAUUAUUAUUUUACUAGAGUUAUUAUAAUUUGCCUUAUCAGCUAAAAUAGAAAAUAAUUUAUUUUUAAUAACUACUCCAUCUUCCAAUGUUAUAUUAUCCAUAGAAAUAGUAGUUUUAAAUUUAUUUGCUAAAACCUCUAUACCCUUUUCCUCAUUUUUGGCAUACAUAGGUUUUGUAGAGAUAAGUUCUUGGGUUGUUUUAUCAUACUUUAAUUCAGAAGCUUUAAUUUCCCAACCAUUUGGGCUUAUACCUAAAAUAUUUGUAUCCAAAGUUAAGUUUCUAUCUUUAUCAAGAAAUACAUUAUCUCCACUUAGAAGCAUUCCUUGUAUUUUAGCUUUUGCUUUUUCAAAUUUACUUUCUUUUUCAUCUAAAUAGUCAAUUUCUUUUUCAGCCUCUACAUGAUAGUCAUCACUUUCAUAAACUGCAUUAAUUGUUUCUACUAUUUUUUUUAUAUCUCCAACUUCUUUAUCAGAACCAAAAUAGUUAAAGUAACCUAAAACUACUGCUAUUACUCCCAUAGCUAUGUAUAUUA ..................................((((((((.............((((.(((((((.............((((((...........(((((((....((((................((((((((((.(((...(((............))).))).))))))))))....................((((((.....(((((.(..(((..((((.........)))).)))..).)))))...((......((((((((((.((.......((..(((((.(((((((...(((....(((......)))....)))...))))))))))))..))..((((......((((...............((((((.(((((...((((..(((..((((((((...(((((..........((((......))))...........)))))....))))))))..)))))))...)))))))))))....((((((..........))))))..............))))))))....)).))))))))))...))....)))))).......................))))....))))))).((......((((.(((....))).)))).....)).))))))...............)))))))...)))).(((.....)))..........)))))))).........(((.(((((.......)))))...)))..... (-97.59) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 278 580 534 207 145 NC_003454:FN1328|5end_Exodeoxyribonuclease_VII_small_subunit_1983129..1983359_NEGATIVE 276 231 193 221 182 NC_003454:FN0346|5end_hypothetical_protein_979267..979497_NEGATIVE 247 740 692 207 162 NC_003454:FN1868|5end_Hypothetical_cytosolic_protein_360433..360663_NEGATIVE 245 31 4 180 151 NC_003454:FN1171|5end_Acetate_kinase_1833561..1833791_NEGATIVE 237 60 13 211 166 NC_003454:FN1207|5end_hypothetical_protein_1866815..1867045_NEGATIVE 234 436 394 190 132 NC_003454:FN0397|5end_Dipeptide_transport_system_permease_protein_dppB_1035822..1036052_POSITIVE 234 55 14 106 62 NC_003454:FN1976|5end_4-amino-4-deoxychorismate_lyase_477195..477425_POSITIVE 233 280 232 199 138 NC_003454:FN1455|5end_UDP-N-acetylenolpyruvoylglucosamine_reductase_2136519..2136749_NEGATIVE 226 225 182 231 185 NC_003454:FN1466|5end_hypothetical_protein_2148862..2149092_POSITIVE 225 605 561 71 15 NC_003454:FN1532|5end_murein_hydrolase_exporter_45319..45549_NEGATIVE 218 221 181 81 34 NC_003454:FN0131|5end_Hemolysin_activator_protein_precursor_759547..759777_POSITIVE 216 109 68 206 162 NC_003454:FN1955|5end_hypothetical_protein_459936..460166_POSITIVE 214 60 13 126 77 NC_003454:FN0883|5end_hypothetical_protein_1544357..1544587_POSITIVE 212 311 274 158 115 NC_003454:FN0329|5end_50S_ribosomal_protein_L13_964133..964363_POSITIVE 210 392 363 35 3 NC_003454:FN0996|5end_Hypothetical_membrane-spanning_protein_1651371..1651601_NEGATIVE 209 110 61 69 13 NC_003454:FN1054|5end_hypothetical_protein_1701595..1701825_POSITIVE 209 299 251 186 140 NC_003454:FN1728|5end_Pyrrolidone-carboxylate_peptidase_228366..228596_NEGATIVE 207 569 521 222 169 NC_003454:FN0804|5end_Cytochrome_C-type_biogenesis_protein_ccdA_1464609..1464839_NEGATIVE 207 180 142 63 22 NC_003454:FN0691|5end_hypothetical_protein_1346372..1346602_NEGATIVE 205 649 602 194 143 NC_003454:FN1334|5end_N-acetylmuramoyl-L-alanine_amidase_1988619..1988849_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 245 31 4 129 100 NC_003454:FN1172|3end_Phosphate_acetyltransferase_1833612..1833762_NEGATIVE 237 575 532 55 4 NC_003454:FN0995|3end_hypothetical_protein_1650672..1650822_POSITIVE 234 436 394 106 48 NC_003454:FN0396|3end_Dipeptide-binding_protein_1035818..1035968_POSITIVE 234 55 14 96 52 NC_003454:FN1975|3end_ATP-dependent_RNA_helicase_477265..477415_POSITIVE 233 579 535 65 21 NC_003454:FN0027|3end_hypothetical_protein_664763..664913_NEGATIVE 210 60 13 79 35 NC_003454:FN0818|3end_DNA-binding_protein_HU_1476759..1476909_NEGATIVE 206 241 201 132 93 NC_003454:FN2073|3end_adenine_phosphoribosyltransferase_584198..584348_POSITIVE 205 649 602 86 35 NC_003454:FN1335|3end_Protein_translocase_subunit_YajC_1988727..1988877_NEGATIVE 205 54 11 98 61 NC_003454:FN1843|3end_Surface_antigen_333468..333618_POSITIVE 204 34 3 86 51 NC_003454:FN2093|3end_General_secretion_pathway_protein_G_603096..603246_NEGATIVE 203 50 7 74 25 NC_003454:FN1336|3end_hypothetical_protein_1989936..1990086_NEGATIVE 199 270 223 78 30 NC_003454:FN1315|3end_hypothetical_protein_1968921..1969071_NEGATIVE 196 83 45 58 10 NC_003454:FN0344|3end_Methyltransferase_976622..976772_NEGATIVE 195 498 451 79 37 NC_003454:FN0038|3end_hypothetical_protein_678197..678347_NEGATIVE 195 456 424 46 8 NC_003454:FN1560|3end_hypothetical_protein_82479..82629_NEGATIVE 194 661 641 150 127 NC_003454:FN1546|3end_translation_elongation_factor_EF-G_59529..59679_NEGATIVE 193 77 38 80 39 NC_003454:FN0787|3end_Transposase_1443908..1444058_POSITIVE 193 227 195 150 113 NC_003454:FN0769|3end_Hemin_transport_system_permease_protein_hmuU_1426752..1426902_POSITIVE 193 176 131 61 22 NC_003454:FN0115|3end_hypothetical_protein_748215..748365_NEGATIVE 192 220 178 127 78 NC_003454:FN0494|3end_Short_chain_dehydrogenase_1139588..1139738_POSITIVE