Origin IGS: ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatggtgggaataaatgtattttcagaagagcttatgacacaagaagcagtatcaagagaaagtatacaaaattctgtaggtaatcttcaaacaaagataaatgatttaaaaagtcagaatgataagcaattagaaggtttgagattagaattaattcaattaatggaacaaggaaaccaagttataaaatcaccatggagttcatggcaatttggaataaattatatgtatagtaaatggaatggagcatataaaggaagaggagataaaaaaaattggccaaaagatttaagagaatattttactgatcctttaaaaagatttgtaaaaaatgattctgttacatcttctacttatggtctaacaacactaaatatcttatatgaaccaccagcagaaattacagtaagtgctgggataagacctaaaaatgttaataaaaaagaaagtaaatttgaaccaaaagaaccagctggtgctcttccaacttttgagccaaggttaataggtactcctggaaaaccagtagcaccagcaactccttctgtgaatgtatttgatacaccagatataccagcaaatggacaatcttttgctcaaagaccaataattggaaaaagaacagcagatgaatatgataatcaaataagtcctagatttaataatgctgttgtagctcaaaactatgatgaatatacacctgaaccagacactcctaatggtaatattgatgttaatatgggagaaactactacttggggtggtggaaaaataagattaaaaagtacagttccagaaggaagaccttttgaaaatggagcaacagaaacaaaagatgtaaatggagcccctagaacaatgccaaaagatccttttatatcaaaaccaagtggaacatattatttaaatcctggaaaagttgaaacaagagatgtatgggatatagaaggtaagaaaaaagatactgtgaatgcttttataagtgattcaagagatcatgatactacaattaatggaaattatacagtaaaaaatttaggaagtggtcctactacaaaattattttttagttataacccttctggtgttggtgggaaaaaatatgataataaagctagctggggatggagtgatggaactgaacaagcagtaaatagagtagcaaaatttacaggtaatttaactttaaaaggagttgaagatccaaataacaaaactgctcttgttggtttggaacatcagctatgggcaaaaagtaaaacttcaacacataaagatgacaaagatgaatggaataattctaactcaaatagcactttattaaatactggaaatattacattagcaagtggaaattatttagttggtatg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cataccaactaaataatttccacttgctaatgtaatatttccagtatttaataaagtgctatttgagttagaattattccattcatctttgtcatctttatgtgttgaagttttactttttgcccatagctgatgttccaaaccaacaagagcagttttgttatttggatcttcaactccttttaaagttaaattacctgtaaattttgctactctatttactgcttgttcagttccatcactccatccccagctagctttattatcatattttttcccaccaacaccagaagggttataactaaaaaataattttgtagtaggaccacttcctaaattttttactgtataatttccattaattgtagtatcatgatctcttgaatcacttataaaagcattcacagtatcttttttcttaccttctatatcccatacatctcttgtttcaacttttccaggatttaaataatatgttccacttggttttgatataaaaggatcttttggcattgttctaggggctccatttacatcttttgtttctgttgctccattttcaaaaggtcttccttctggaactgtactttttaatcttatttttccaccaccccaagtagtagtttctcccatattaacatcaatattaccattaggagtgtctggttcaggtgtatattcatcatagttttgagctacaacagcattattaaatctaggacttatttgattatcatattcatctgctgttctttttccaattattggtctttgagcaaaagattgtccatttgctggtatatctggtgtatcaaatacattcacagaaggagttgctggtgctactggttttccaggagtacctattaaccttggctcaaaagttggaagagcaccagctggttcttttggttcaaatttactttcttttttattaacatttttaggtcttatcccagcacttactgtaatttctgctggtggttcatataagatatttagtgttgttagaccataagtagaagatgtaacagaatcattttttacaaatctttttaaaggatcagtaaaatattctcttaaatcttttggccaattttttttatctcctcttcctttatatgctccattccatttactatacatataatttattccaaattgccatgaactccatggtgattttataacttggtttccttgttccattaattgaattaattctaatctcaaaccttctaattgcttatcattctgactttttaaatcatttatctttgtttgaagattacctacagaattttgtatactttctcttgatactgcttcttgtgtcataagctcttctgaaaatacatttattcccaccattaagaaaactattactaaactgagtgaatatttcacacttttatacctttttgctattgatcgtaaatgtctttcaatttgttctaagttgtttttcataattttgccccctattattgtatttttgtttagtaatctatttccttaaattatttttttat Mask Tandem Repeat Region ================================================ ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatggtgggaataaatgtattttcagaagagcttatgacacaagaagcagtatcaagagaaagtatacaaaattctgtaggtaatcttcaaacaaagataaatgatttaaaaagtcagaatgataagcaattagaaggtttgagattagaattaattcaattaatggaacaaggaaaccaagttataaaatcaccatggagttcatggcaatttggaataaattatatgtatagtaaatggaatggagcatataaaggaagaggagataaaaaaaattggccaaaagatttaagagaatattttactgatcctttaaaaagatttgtaaaaaatgattctgttacatcttctacttatggtctaacaacactaaatatcttatatgaaccaccagcagaaattacagtaagtgctgggataagacctaaaaatgttaataaaaaagaaagtaaatttgaaccaaaagaaccagctggtgctcttccaacttttgagccaaggttaataggtactcctggaaaaccagtagcaccagcaactccttctgtgaatgtatttgatacaccagatataccagcaaatggacaatcttttgctcaaagaccaataattggaaaaagaacagcagatgaatatgataatcaaataagtcctagatttaataatgctgttgtagctcaaaactatgatgaatatacacctgaaccagacactcctaatggtaatattgatgttaatatgggagaaactactacttggggtggtggaaaaataagattaaaaagtacagttccagaaggaagaccttttgaaaatggagcaacagaaacaaaagatgtaaatggagcccctagaacaatgccaaaagatccttttatatcaaaaccaagtggaacatattatttaaatcctggaaaagttgaaacaagagatgtatgggatatagaaggtaagaaaaaagatactgtgaatgcttttataagtgattcaagagatcatgatactacaattaatggaaattatacagtaaaaaatttaggaagtggtcctactacaaaattattttttagttataacccttctggtgttggtgggaaaaaatatgataataaagctagctggggatggagtgatggaactgaacaagcagtaaatagagtagcaaaatttacaggtaatttaactttaaaaggagttgaagatccaaataacaaaactgctcttgttggtttggaacatcagctatgggcaaaaagtaaaacttcaacacataaagatgacaaagatgaatggaataattctaactcaaatagcactttattaaatactggaaatattacattagcaagtggaaattatttagttggtatg Find is-nt database================================================ Query_seq: FN0386:FN0387|FN0386:FN0387:hypothetical protein:Fusobacterium outer membrane protein family:->->:1019950..1021481 1532 ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatggtgggaataaatgtattttcagaagagcttatgacacaagaagcagtatcaagagaaagtatacaaaattctgtaggtaatcttcaaacaaagataaatgatttaaaaagtcagaatgataagcaattagaaggtttgagattagaattaattcaattaatggaacaaggaaaccaagttataaaatcaccatggagttcatggcaatttggaataaattatatgtatagtaaatggaatggagcatataaaggaagaggagataaaaaaaattggccaaaagatttaagagaatattttactgatcctttaaaaagatttgtaaaaaatgattctgttacatcttctacttatggtctaacaacactaaatatcttatatgaaccaccagcagaaattacagtaagtgctgggataagacctaaaaatgttaataaaaaagaaagtaaatttgaaccaaaagaaccagctggtgctcttccaacttttgagccaaggttaataggtactcctggaaaaccagtagcaccagcaactccttctgtgaatgtatttgatacaccagatataccagcaaatggacaatcttttgctcaaagaccaataattggaaaaagaacagcagatgaatatgataatcaaataagtcctagatttaataatgctgttgtagctcaaaactatgatgaatatacacctgaaccagacactcctaatggtaatattgatgttaatatgggagaaactactacttggggtggtggaaaaataagattaaaaagtacagttccagaaggaagaccttttgaaaatggagcaacagaaacaaaagatgtaaatggagcccctagaacaatgccaaaagatccttttatatcaaaaccaagtggaacatattatttaaatcctggaaaagttgaaacaagagatgtatgggatatagaaggtaagaaaaaagatactgtgaatgcttttataagtgattcaagagatcatgatactacaattaatggaaattatacagtaaaaaatttaggaagtggtcctactacaaaattattttttagttataacccttctggtgttggtgggaaaaaatatgataataaagctagctggggatggagtgatggaactgaacaagcagtaaatagagtagcaaaatttacaggtaatttaactttaaaaggagttgaagatccaaataacaaaactgctcttgttggtttggaacatcagctatgggcaaaaagtaaaacttcaacacataaagatgacaaagatgaatggaataattctaactcaaatagcactttattaaatactggaaatattacattagcaagtggaaattatttagttggtatg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN0386:FN0387|FN0386:FN0387:hypothetical protein:Fusobacterium outer membrane protein family:->->:1019950..1021481 1532 ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatggtgggaataaatgtattttcagaagagcttatgacacaagaagcagtatcaagagaaagtatacaaaattctgtaggtaatcttcaaacaaagataaatgatttaaaaagtcagaatgataagcaattagaaggtttgagattagaattaattcaattaatggaacaaggaaaccaagttataaaatcaccatggagttcatggcaatttggaataaattatatgtatagtaaatggaatggagcatataaaggaagaggagataaaaaaaattggccaaaagatttaagagaatattttactgatcctttaaaaagatttgtaaaaaatgattctgttacatcttctacttatggtctaacaacactaaatatcttatatgaaccaccagcagaaattacagtaagtgctgggataagacctaaaaatgttaataaaaaagaaagtaaatttgaaccaaaagaaccagctggtgctcttccaacttttgagccaaggttaataggtactcctggaaaaccagtagcaccagcaactccttctgtgaatgtatttgatacaccagatataccagcaaatggacaatcttttgctcaaagaccaataattggaaaaagaacagcagatgaatatgataatcaaataagtcctagatttaataatgctgttgtagctcaaaactatgatgaatatacacctgaaccagacactcctaatggtaatattgatgttaatatgggagaaactactacttggggtggtggaaaaataagattaaaaagtacagttccagaaggaagaccttttgaaaatggagcaacagaaacaaaagatgtaaatggagcccctagaacaatgccaaaagatccttttatatcaaaaccaagtggaacatattatttaaatcctggaaaagttgaaacaagagatgtatgggatatagaaggtaagaaaaaagatactgtgaatgcttttataagtgattcaagagatcatgatactacaattaatggaaattatacagtaaaaaatttaggaagtggtcctactacaaaattattttttagttataacccttctggtgttggtgggaaaaaatatgataataaagctagctggggatggagtgatggaactgaacaagcagtaaatagagtagcaaaatttacaggtaatttaactttaaaaggagttgaagatccaaataacaaaactgctcttgttggtttggaacatcagctatgggcaaaaagtaaaacttcaacacataaagatgacaaagatgaatggaataattctaactcaaatagcactttattaaatactggaaatattacattagcaagtggaaattatttagttggtatg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN0386:FN0387|FN0386:FN0387:hypothetical protein:Fusobacterium outer membrane protein family:->->:1019950..1021481 1532 ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatggtgggaataaatgtattttcagaagagcttatgacacaagaagcagtatcaagagaaagtatacaaaattctgtaggtaatcttcaaacaaagataaatgatttaaaaagtcagaatgataagcaattagaaggtttgagattagaattaattcaattaatggaacaaggaaaccaagttataaaatcaccatggagttcatggcaatttggaataaattatatgtatagtaaatggaatggagcatataaaggaagaggagataaaaaaaattggccaaaagatttaagagaatattttactgatcctttaaaaagatttgtaaaaaatgattctgttacatcttctacttatggtctaacaacactaaatatcttatatgaaccaccagcagaaattacagtaagtgctgggataagacctaaaaatgttaataaaaaagaaagtaaatttgaaccaaaagaaccagctggtgctcttccaacttttgagccaaggttaataggtactcctggaaaaccagtagcaccagcaactccttctgtgaatgtatttgatacaccagatataccagcaaatggacaatcttttgctcaaagaccaataattggaaaaagaacagcagatgaatatgataatcaaataagtcctagatttaataatgctgttgtagctcaaaactatgatgaatatacacctgaaccagacactcctaatggtaatattgatgttaatatgggagaaactactacttggggtggtggaaaaataagattaaaaagtacagttccagaaggaagaccttttgaaaatggagcaacagaaacaaaagatgtaaatggagcccctagaacaatgccaaaagatccttttatatcaaaaccaagtggaacatattatttaaatcctggaaaagttgaaacaagagatgtatgggatatagaaggtaagaaaaaagatactgtgaatgcttttataagtgattcaagagatcatgatactacaattaatggaaattatacagtaaaaaatttaggaagtggtcctactacaaaattattttttagttataacccttctggtgttggtgggaaaaaatatgataataaagctagctggggatggagtgatggaactgaacaagcagtaaatagagtagcaaaatttacaggtaatttaactttaaaaggagttgaagatccaaataacaaaactgctcttgttggtttggaacatcagctatgggcaaaaagtaaaacttcaacacataaagatgacaaagatgaatggaataattctaactcaaatagcactttattaaatactggaaatattacattagcaagtggaaattatttagttggtatg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 165 Max: 1532 Len: 1368 Subject: UniRef90_Q7P393 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=2; Fusobacterium nucleatum|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 1.0E-124 bit: 447.0 Len: 825 Query Start:708 Query End:1532 Subject Strand: null Subject Start: 1 Subject End: 281 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V N V F D T P D I P A N G Q S F A Q R P I I G K R T A D E Y D N Q I S P R F N N A V V A Q N Y D E Y T P E P D T P N G N I D V N M G E T T T W G G G K I R L K S T V P E G R P F E N G A T E - - - T K D V N G - - - A P R T M P K D P F I S K P S G T Y Y L N P G K V E T R D V W D I E G K K K D T V N A F I S D S R D H D T T I N G N Y T V K N L G S G P T T K L F F S Y N P S G V G G K K Y D N K A S W G W S D G T E Q A V N R V A K F T G N L T L K G V E D P N N K T A L V G L E H Q L W A X X X X X X X X X X X X E W X X X X X X X X X X X X X X X X X A S G N Y L V G M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N V F D T P D I P A N G Q S F A Q R P I I G K R T A D E Y D N Q I S P R F N N A V V A Q N Y D E Y T P E P D T P N G N I D V N M G K T T T W G G G R I K L K S T V P E G R P F E N G E E E Y E N I K D E H G N V I G Q R K M P K D P Y I L K R S G T Y Y L N P G K V E T K Y V N D T E G R K L D T V N A F I S D S R D H N T T I N G N Y T V K N L G D G P T T K L F F S Y N P S G V G G K K Y D N K A S W G W S D G T E Q A V N R V A K F T G N L T L K G V E D P N N K T A L V G L E H Q L W A K S R T S T H K D D Q A E W N N S N S N T T L L N T G N I T L A S G N Y L V G M Subject: UniRef90_Q7P365 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 2.0E-29 bit: 133.0 Len: 531 Query Start:165 Query End:695 Subject Strand: null Subject Start: 1 Subject End: 216 .................................................................................................................................................................... V G I N V F S E E L M T Q E - - - - - - - - - - - A V S R E S I Q N S V G N L Q T K I N D L K S Q N D K Q L E G L R L E L I Q L M E Q G N Q V I K S P W S S W Q F G I N Y M Y S K W N G A Y K G R G D K - K N W P - - - - - - - - K D L R E Y F T D P L K R F V K N D S V T S - - - - - - - - - - - - - - S T Y G L T T L N I L Y E P P A E I T V S A G I R P K N V N K K E S K F E P K E P A G A - - - - - - - L P T F E P R L I G T P G K P V A P ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................... M G G S A F S E E I N N E S T Q N T I P T R E Q I A S S K E N L K N S V G S L Q S K I D S A R T E N E K S L A G L K L E L I Q L M E Q G D Q V V K S P W M S W Q F G A N Y M Y S K W N G T Y K G K A D K A E K Y P F E G M F A R S T N L F E R V I S P L S E K Y K G L A T S T N P H S A S S N A R N G L G S G Y G L A S T A P R Q E P L V A I N I E A S I R P K D V T - R S A V S A P T V G V G A P R L D T L N V P S S E P - L S V T P P N P K A P ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaactccttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 131 End: 241 .................................................................................................................................. M F T Q F S N S F L N G G N K C I F R R A Y D T R S S I K R K Y T K F C R ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 290 End: 391 ................................................................................................................................................................................................................................................................................................. M R R F E I R I N S I N G T R K P S Y K I T M E F M A I W N K L Y V ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 1204 End: 1311 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V L L Q N Y F L V I T L L V L V G K N M I I K L A G D G V M E L N K Q ............................................................................................................................................................................................................................. Protein_Len: 42 Strand: + Start: 1357 End: 1482 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K I Q I T K L L L L V W N I S Y G Q K V K L Q H I K M T K M N G I I L T Q I A L Y .................................................. Protein_Len: 60 Strand: + Start: 45 End: 1532 ............................................ M I G G K I M K N N L E Q I E R H L R S I A K R Y K S V K Y S L S L V I V F L M V G I N V F S E E L M T Q E A V S R E S Protein_Len: 32 Strand: - Start: 1403 End: 1498 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S H A F L L V E V C L S S L S S H F L E L E F L V K N F V P F M .................................. Protein_Len: 40 Strand: - Start: 1333 End: 1452 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y N L K L L L Q L D L Y C F Q E Q Q N P V D A I P L F Y F K L V Y L H C L H M ................................................................................ Protein_Len: 47 Strand: - Start: 1235 End: 1375 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L G E P T P P F F Y S L L A L Q P H L S P V S C A T F L T A F N V P L K V K F P T S S G F L M ............................................................................................................................................................. Protein_Len: 39 Strand: - Start: 1224 End: 1340 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K K T I V R R T N T P F F I I I F S A P S P T I S S F L C Y I S Y C F K C T M ................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 942 End: 1031 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. F T C N W F S S R K F I S C C F C F I Y I S G R S C H W F M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 848 End: 1039 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G S G S V G L P L I S T L I P S V V V Q P P P F I L N F L V T G S P L G K S F P A V S V F S T F P A G L V I G F S G K M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 666 End: 899 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I C W I Y W C I S L R K S L S W Y N S F S C C I F I I I L Y T R S K I I S N Y S L V I I F I C R F W V S R I T I N I N M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 598 End: 795 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q V L L V L Q H E E L K Q A L T L L Y E Q F V L L V L L E K Q S H I Q Y V L Y V L L H V I K Q E F V L L Q F F F L L H M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 518 End: 733 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A S I V T L A P I L G L F T L L F S L L N S G F S G A P A R G V K S G L N I P V G P F G T A G A V G E T F T N S V G S M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 346 End: 459 ......................................................................................................................................................................................................................................................................................................................................................... L I V M S N M A I Q F L N Y T Y Y I S H L M Y L F L L Y F F N A L L N L L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 42 Strand: - Start: 196 End: 321 ................................................................................................................................................................................................... S V L L L I L L F Y V F N Q L Y D E F L S L H N L F D S H Y A I L L N S I L I L E M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 17 End: 226 ................ I P P L I I F F L K S C I S L C K R D I A F L Y L L T F Y E S L K T I T K K I T P I F T N E S S S I V C S A T D L S L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaactccttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 592 End: 621 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATTTACTTTCTTTTTTATTAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1416 End: 1445 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCATCTTTATGTGTTGAAGTTTTACT....................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaactccttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -5.1 Tail_Score: -4.56887 Start: 124 End: 140 Full_Region: aactattactaaact gagtgaa tat ttcacac ttttatacctttttg ...........................................................................................................................gagtgaatatttcacac................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 78 HP_score: -9.7 Tail_Score: -3.09968 Start: 669 End: 694 Full_Region: acagaaggagttgct ggtgctactgg tttt ccaggagtacc tattaaccttggctc ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggtgctactggttttccaggagtacc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 40 HP_score: -2.1 Tail_Score: -2.74038 Start: 738 End: 757 Full_Region: attattggtctttga gcaaaag attgtc catttgc tggtatatctggtgt .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaaaagattgtccatttgc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 47 HP_score: -4.3 Tail_Score: -2.83261 Start: 1198 End: 1212 Full_Region: aaaataattttgtag tagga ccact tccta aattttttactgtat .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taggaccacttccta................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: FN0386:FN0387|FN0386:FN0387:hypothetical protein:Fusobacterium outer membrane protein family:->->:1019950..1021481 1532 ataaaaaaataatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaactccttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 10 Max: 163 Len: 154 Subject: NC_003454_FN0386_FN0387|hypothetical protein:Fusobacterium outer membrane protein family|POSITIVE:POSITIVE|[1019950,1021481]|1532 HSP 1 e-value: 2.0E-81 bit: 305.0 Len: 154 Query Start:10 Query End:163 Subject Strand: POSITIVE Subject Start: 10 Subject End: 163 .........taatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .........taatttaaggaaatagattactaaacaaaaatacaataatagggggcaaaattatgaaaaacaacttagaacaaattgaaagacatttacgatcaatagcaaaaaggtataaaagtgtgaaatattcactcagtttagtaatagttttcttaat......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUUAAGGAAAUAGAUUACUAAACAAAAAUACAAUAAUAGGGGGCAAAAUUAUGAAAAACAACUUAGAACAAAUUGAAAGACAUUUACGAUCAAUAGCAAAAAGGUAUAAAAGUGUGAAAUAUUCACUCAGUUUAGUAAUAGUUUUCUUAAU ....((((((((((..((((((((((....((((.....((((..(...............)..))))......(((((..(.......)..))))).........))))....(.((((.....)))).).)))))))))).)))))))))). (-25.76) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUAAGAAAACUAUUACUAAACUGAGUGAAUAUUUCACACUUUUAUACCUUUUUGCUAUUGAUCGUAAAUGUCUUUCAAUUUGUUCUAAGUUGUUUUUCAUAAUUUUGCCCCCUAUUAUUGUAUUUUUGUUUAGUAAUCUAUUUCCUUAAAUUA .((((((((...((((((((((...((((.....))))......(((.(((...((.(((((..(.......)..)))))..))...))).)))..................................))))))))))...))).))))).... (-19.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 202 59 31 217 181 NC_003454:FN1352|5end_ABC_transporter_ATP-binding_protein_2004180..2004410_NEGATIVE 190 88 41 93 47 NC_003454:FN0507|5end_hypothetical_protein_1157430..1157660_POSITIVE 172 148 116 215 184 NC_003454:FN1172|5end_Phosphate_acetyltransferase_1834625..1834855_NEGATIVE 169 134 97 198 168 NC_003454:FN1846|5end_hypothetical_protein_335519..335749_POSITIVE 167 72 40 231 202 NC_003454:FN0508|5end_Serine_protease_1158652..1158882_NEGATIVE 167 139 95 83 38 NC_003454:FN0115|5end_hypothetical_protein_748511..748741_NEGATIVE 165 140 92 68 28 NC_003454:FN0016|5end_hypothetical_protein_653630..653860_POSITIVE 163 150 123 86 62 NC_003454:FN1541|5end_Heptaprenyl_diphosphate_synthase_component_II_55215..55445_POSITIVE 162 136 98 186 143 NC_003454:FN0354|5end_Hypothetical_membrane-spanning_protein_985292..985522_POSITIVE 158 73 38 56 13 NC_003454:FN0194|5end_Dipeptide_transport_system_permease_protein_dppC_819839..820069_POSITIVE 157 88 41 93 33 NC_003454:FN1509|5end_hypothetical_protein_14176..14406_NEGATIVE 156 138 93 167 113 NC_003454:FN0890|5end_Thiamin_pyrophosphokinase_1552087..1552317_NEGATIVE 153 57 35 229 207 NC_003454:FN0319|5end_Citrate_(pro-3S)-lyase_ligase_956855..957085_NEGATIVE 152 81 41 206 170 NC_003454:FN1348|5end_ABC_transporter_ATP-binding_protein_2001141..2001371_NEGATIVE 152 57 19 51 17 NC_003454:FN0978|5end_NA+/H+_antiporter_NHAC_1631965..1632195_NEGATIVE 148 101 62 173 137 NC_003454:FN1085|5end_4-methyl-5(B-hydroxyethyl)-thiazole_monophosphate_biosynthesis_enzyme_1728934..1729164_POSITIVE 147 139 92 70 29 NC_003454:FN0500|5end_hypothetical_protein_1148943..1149173_POSITIVE 146 88 41 72 13 NC_003454:FN0531|5end_hypothetical_protein_1186389..1186619_POSITIVE 146 49 7 81 40 NC_003454:FN1985|5end_Inner_membrane_protein_488637..488867_NEGATIVE 146 145 110 124 80 NC_003454:FN1710|5end_Integral_membrane_protein,_YGGT_family_205992..206222_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 184 150 110 138 92 NC_003454:FN1836|3end_Tetratricopeptide_repeat_family_protein_323904..324054_NEGATIVE 173 148 104 88 22 NC_003454:FN0211|3end_Plasmid_addiction_system_poison_protein_837570..837720_POSITIVE 166 54 19 50 17 NC_003454:FN0585|3end_Two-component_response_regulator_czcR_1240542..1240692_POSITIVE 163 150 123 85 61 NC_003454:FN1540|3end_Iron-sulfur_cluster-binding_protein_55294..55444_POSITIVE 162 47 4 116 64 NC_003454:FN1509|3end_hypothetical_protein_14099..14249_NEGATIVE 161 145 115 41 6 NC_003454:FN1123|3end_Thioredoxin-like_protein_1768031..1768181_POSITIVE 160 67 21 131 91 NC_003454:FN1807|3end_hypothetical_protein_288685..288835_NEGATIVE 159 150 101 63 12 NC_003454:FN0371|3end_hypothetical_protein_1000840..1000990_POSITIVE 158 73 38 59 16 NC_003454:FN0193|3end_Dipeptide_transport_system_permease_protein_dppB_819922..820072_POSITIVE 153 47 1 72 22 NC_003454:FN1498|3end_Integral_membrane_protein_3542..3692_POSITIVE 149 107 67 72 31 NC_003454:FN1616|3end_transcription_antitermination_protein_NusB_125976..126126_NEGATIVE 146 145 110 110 66 NC_003454:FN1709|3end_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase_206058..206208_POSITIVE 144 118 76 58 8 NC_003454:FN1329|3end_Methyltransferase_1983342..1983492_NEGATIVE 144 67 27 53 6 NC_003454:FN1696|3end_UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose_4-reductase_190876..191026_NEGATIVE 141 150 109 148 113 NC_003454:FN1091|3end_Sigma_factor_sigB_regulation_protein_rsbU_1737338..1737488_POSITIVE 139 150 105 116 72 NC_003454:FN1331|3end_Methyltransferase_1984915..1985065_NEGATIVE 138 136 92 98 53 NC_003454:FN1713|3end_tRNA_(Uracil-5-)_-methyltransferase_208968..209118_POSITIVE 136 46 14 117 84 NC_003454:FN0663|3end_hypothetical_protein_1319797..1319947_POSITIVE 136 134 95 147 97 NC_003454:FN1838|3end_Glycerol_uptake_facilitator_protein_328333..328483_POSITIVE 136 101 62 45 13 NC_003454:FN1543|3end_Ubiquinone/menaquinone_biosynthesis_methyltransferase_UBIE_57889..58039_POSITIVE