Origin IGS: tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagaaagtccaaaattatattaaagctttaaattttggaataagaaaaataacagaaggaatactaccattttctagtagattaataaaagagatacattctattttattagaagatgttagaggaaaatataaatatccaggagagtatagaattagtcaaaattggattggaggaagtaaaccatctgatgcaaagcatgttccacctccaaattatatgttaaatgattta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaatcatttaacatataatttggaggtggaacatgctttgcatcagatggtttacttcctccaatccaattttgactaattctatactctcctggatatttatattttcctctaacatcttctaataaaatagaatgtatctcttttattaatctactagaaaatggtagtattccttctgttatttttcttattccaaaatttaaagctttaatataattttggactttctaataaaatatttatatctgaattatcccatttccaaaaatcattgataaatttggtacaaaggagtagtaaagttcttgttttattttattaccagatttaaatttatcaagatatatcatttttcactcctttttattattaaatttattttaaattatcacattttgcttatttttctctaagtattgtatcactttatatattcaaagtaaagatagaaagtttaaaatatacttatataaaaatggcgctgatagaaattattctatcaacaccatattttatagattatattacactactttatagctctgtttagagata Mask Tandem Repeat Region ================================================ tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagaaagtccaaaattatattaaagctttaaattttggaataagaaaaataacagaaggaatactaccattttctagtagattaataaaagagatacattctattttattagaagatgttagaggaaaatataaatatccaggagagtatagaattagtcaaaattggattggaggaagtaaaccatctgatgcaaagcatgttccacctccaaattatatgttaaatgattta Find is-nt database================================================ Query_seq: FN0254:FN0255|FN0254:FN0255:Fusobacterium outer membrane protein family:Hypothetical cytosolic protein:->->:881451..882009 559 tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagaaagtccaaaattatattaaagctttaaattttggaataagaaaaataacagaaggaatactaccattttctagtagattaataaaagagatacattctattttattagaagatgttagaggaaaatataaatatccaggagagtatagaattagtcaaaattggattggaggaagtaaaccatctgatgcaaagcatgttccacctccaaattatatgttaaatgattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN0254:FN0255|FN0254:FN0255:Fusobacterium outer membrane protein family:Hypothetical cytosolic protein:->->:881451..882009 559 tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagaaagtccaaaattatattaaagctttaaattttggaataagaaaaataacagaaggaatactaccattttctagtagattaataaaagagatacattctattttattagaagatgttagaggaaaatataaatatccaggagagtatagaattagtcaaaattggattggaggaagtaaaccatctgatgcaaagcatgttccacctccaaattatatgttaaatgattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN0254:FN0255|FN0254:FN0255:Fusobacterium outer membrane protein family:Hypothetical cytosolic protein:->->:881451..882009 559 tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagaaagtccaaaattatattaaagctttaaattttggaataagaaaaataacagaaggaatactaccattttctagtagattaataaaagagatacattctattttattagaagatgttagaggaaaatataaatatccaggagagtatagaattagtcaaaattggattggaggaagtaaaccatctgatgcaaagcatgttccacctccaaattatatgttaaatgattta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 45 Min: 329 Max: 559 Len: 231 Subject: UniRef90_Q1RII1 Cluster: Fic family protein; n=2; Rickettsia bellii|Rep: Fic family protein - Rickettsia bellii (strain RML369-C) HSP 1 e-value: 5.0E-16 bit: 86.3 Len: 228 Query Start:329 Query End:556 Subject Strand: null Subject Start: 107 Subject End: 181 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D ... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V K A I M Y G L E R L K D S F - P F S L R L L R E I H N I L L S G G R G S K K L P G E F R R S Q N W I G G T R P G N A L F V P P P V D Y L N D ... Subject: UniRef90_Q74GS7 Cluster: Fic family protein; n=1; Geobacter sulfurreducens|Rep: Fic family protein - Geobacter sulfurreducens HSP 1 e-value: 9.0E-16 bit: 85.5 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 112 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M N Y G L E R L Q E - - L P L S L R L I K E I H A R L M A G I R G G H K S P G E F R T S Q N W I G G T R P G N A A F V P P P ..................... Subject: UniRef90_Q4AN73 Cluster: Filamentation induced by cAMP protein Fic; n=1; Chlorobium phaeobacteroides BS1|Rep: Filamentation induced by cAMP protein Fic - Chlorobium phaeobacteroides BS1 HSP 1 e-value: 2.0E-15 bit: 84.3 Len: 222 Query Start:329 Query End:550 Subject Strand: null Subject Start: 109 Subject End: 181 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L ......... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y I S A L N H G L E R L A N G F - P L S L R L L K E V H K I L L A K G R G S E K T P G E F R R S Q N W I G G T R P G N A S F V P P P P E M V ......... Subject: UniRef90_Q64PI7 Cluster: Hypothetical protein; n=1; Bacteroides fragilis|Rep: Hypothetical protein - Bacteroides fragilis HSP 1 e-value: 6.0E-15 bit: 82.8 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 105 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V H N Y I N A M N E A V K M L E E - - L P F S S R L I R N V H R I L M N G V R G E H K Q P G E F R K S Q N W I G G S S I N D A I F V P P T H N S I P E L Subject: UniRef90_Q1VSQ3 Cluster: Hypothetical protein; n=1; Psychroflexus torquis ATCC 700755|Rep: Hypothetical protein - Psychroflexus torquis ATCC 700755 HSP 1 e-value: 1.0E-14 bit: 82.0 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 71 Subject End: 145 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V Q N Y I Q A M N E A V K L L Y T S - - P F S S R L I K Q T H K I L L Q G V R G A N K L P G E F R I S Q N W I G G A S I N D A M F I P P V H T S I G E I Subject: UniRef90_Q3GHH2 Cluster: Filamentation induced by cAMP protein Fic; n=1; Prosthecochloris vibrioformis DSM 265|Rep: Filamentation induced by cAMP protein Fic - Prosthecochloris vibrioformis DSM 265 HSP 1 e-value: 1.0E-14 bit: 81.6 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 109 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L N H G L N R L N E D F - P L S L R L L K E I H S V L L S T G R G K E C D P G E F R R S Q N W I G G S R P G M A A F V P P P ..................... Subject: UniRef90_Q8KEL0 Cluster: Hypothetical protein; n=2; Chlorobaculum tepidum|Rep: Hypothetical protein - Chlorobium tepidum HSP 1 e-value: 2.0E-14 bit: 81.3 Len: 222 Query Start:329 Query End:550 Subject Strand: null Subject Start: 96 Subject End: 168 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L ......... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L D H G V A R L K E G F - P L S N R L I R E M H T V L L F R G R G S N K G P G E F R R S Q N W I G G T R P G N A L F V P P P P H L V ......... Subject: UniRef90_A1IAT7 Cluster: Fic family protein; n=3; Deltaproteobacteria|Rep: Fic family protein - Candidatus Desulfococcus oleovorans Hxd3 HSP 1 e-value: 2.0E-14 bit: 81.3 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 109 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L E H G L R L L E E G - L P L S L R L L R E I H G V L L T K G R G S M Q A P G E F R R S Q N W I G G T R P G N A A F V P P P ..................... Subject: UniRef90_Q8PQT7 Cluster: Hypothetical protein XAC0234; n=1; Xanthomonas axonopodis pv. citri|Rep: Hypothetical protein XAC0234 - Xanthomonas axonopodis pv. citri HSP 1 e-value: 2.0E-14 bit: 80.9 Len: 228 Query Start:329 Query End:556 Subject Strand: null Subject Start: 110 Subject End: 185 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D ... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L N H G L R R L R E D D F P L S L R L I R E M H A L L L Q G G R G A S K Q P G E F R R S Q V W V G G A S P A L A H F V P P P P D A L P D ... Subject: UniRef90_Q73R58 Cluster: Fic family protein; n=1; Treponema denticola|Rep: Fic family protein - Treponema denticola HSP 1 e-value: 4.0E-14 bit: 80.1 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 105 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V H N Y V K A M N N A I Q E L E N - - L P L S N R L I K N T H K I L L S T G R G E H K S P G E F R I S Q N W I G G T T L S D A V F I P P A H E E L P E L Subject: UniRef90_Q1F3N5 Cluster: Filamentation induced by cAMP protein Fic; n=1; Roseiflexus sp. RS-1|Rep: Filamentation induced by cAMP protein Fic - Roseiflexus sp. RS-1 HSP 1 e-value: 4.0E-14 bit: 80.1 Len: 228 Query Start:329 Query End:556 Subject Strand: null Subject Start: 109 Subject End: 183 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D ... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L E H G L E R L R D S F - P F S N R L I R E M H A V L L S R G R G S E K L P G E F R R T Q N W I G G T R P G N A H F V P P P P D R V E D ... Subject: UniRef90_Q0YGP6 Cluster: Filamentation induced by cAMP protein Fic; n=1; Geobacter sp. FRC-32|Rep: Filamentation induced by cAMP protein Fic - Geobacter sp. FRC-32 HSP 1 e-value: 4.0E-14 bit: 80.1 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 112 Subject End: 178 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M N Y G L E W L R E - - L P L S L R L I K E I H A R L M S G I R G G H K S P G E F R T T Q N W I G G T R P G N A A F V P P ........................ Subject: UniRef90_Q3AP24 Cluster: Fic family protein; n=1; Chlorobium chlorochromatii CaD3|Rep: Fic family protein - Chlorobium chlorochromatii (strain CaD3) HSP 1 e-value: 5.0E-14 bit: 79.7 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 105 Subject End: 171 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V R N Y I D A V N S A I T T L H D - - L P L S N R L L K Q T H K I L L S G V R G E H K L P G E F R V S Q N W I G G S N L T D A S F I P P ........................ Subject: UniRef90_A1B787 Cluster: Filamentation induced by cAMP protein Fic; n=1; Paracoccus denitrificans PD1222|Rep: Filamentation induced by cAMP protein Fic - Paracoccus denitrificans (strain Pd 1222) HSP 1 e-value: 8.0E-14 bit: 79.0 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 112 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M M Y G L E R L E E - - L P L S L R L I R E M H A R L L Q S G R G D T K S P G D F R R S Q N W I G G S R P G N A L Y V P P P ..................... Subject: UniRef90_Q12GR2 Cluster: Filamentation induced by cAMP protein Fic; n=1; Polaromonas sp. JS666|Rep: Filamentation induced by cAMP protein Fic - Polaromonas sp. (strain JS666 / ATCC BAA-500) HSP 1 e-value: 1.0E-13 bit: 78.6 Len: 222 Query Start:329 Query End:550 Subject Strand: null Subject Start: 108 Subject End: 181 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P N Y M L ......... ........................................................................................................................................................................................................................................................................................................................................ E V I N Y V R A M N H G L R R L N E - - L P L S L R L L K E I H G E L M Q N V R G G E K T P G E F R T S Q N W I G S A G S T L A N A S F V P P P P H E L ......... Subject: UniRef90_UPI0000DB0EE3 Cluster: hypothetical protein RbelO_01000694; n=1; Rickettsia bellii OSU 85-389|Rep: hypothetical protein RbelO_01000694 - Rickettsia bellii OSU 85-389 HSP 1 e-value: 2.0E-13 bit: 77.4 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 106 Subject End: 183 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P - P N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V Q N Y I L A L D Y G L E R I K E - - L P L S L R L I K E L H A K L M N S A R G E Y A I P G E F R K S Q N W I G S P G C T L N T A K Y V P P H P E E L M N C L Subject: UniRef90_Q18ST8 Cluster: Filamentation induced by cAMP protein Fic; n=2; Desulfitobacterium hafniense|Rep: Filamentation induced by cAMP protein Fic - Desulfitobacterium hafniense (strain DCB-2) HSP 1 e-value: 3.0E-13 bit: 77.0 Len: 219 Query Start:332 Query End:550 Subject Strand: null Subject Start: 106 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................... V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P - P N Y M L ......... ........................................................................................................................................................................................................................................................................................................................................... V I N Y I K A S H Y G S A R L A E - - L P L C N R L L K E I H E I L M Q D V R G G E K S P G E F R S S Q N W I G P A G S T L R D A R Y I P P H P E D M L ......... Subject: UniRef90_A0VAU0 Cluster: Filamentation induced by cAMP protein Fic; n=1; Delftia acidovorans SPH-1|Rep: Filamentation induced by cAMP protein Fic - Delftia acidovorans SPH-1 HSP 1 e-value: 3.0E-13 bit: 77.0 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 112 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M M Y G L E R L R D - - L P L S L R L I R E M H G R L L Q S A R G G T K S P G E F R R S Q N W I G G T R P G N A L F V P P P ..................... Subject: UniRef90_Q92XU2 Cluster: Hypothetical protein; n=1; Sinorhizobium meliloti|Rep: Hypothetical protein - Rhizobium meliloti (Sinorhizobium meliloti) HSP 1 e-value: 4.0E-13 bit: 76.6 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 125 Subject End: 192 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M M F G L E R M R Q - - L P L S L R L I R E M H Q R L L D S G R G G R R S P G E F R T S Q N W I G G T R P G N A M F V P P P ..................... Subject: UniRef90_A0GMX5 Cluster: Filamentation induced by cAMP protein Fic; n=1; Burkholderia phytofirmans PsJN|Rep: Filamentation induced by cAMP protein Fic - Burkholderia phytofirmans PsJN HSP 1 e-value: 5.0E-13 bit: 76.3 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 113 Subject End: 180 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M M Y G L D R L R D - - L P L S L R L I R E M H A R L L Q G G R G G T K S P G E F R R S Q N W I G G T R P G N A L Y V P P P ..................... Subject: UniRef90_A0LJY8 Cluster: Filamentation induced by cAMP protein Fic; n=1; Syntrophobacter fumaroxidans MPOB|Rep: Filamentation induced by cAMP protein Fic - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) HSP 1 e-value: 1.0E-12 bit: 75.1 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 105 Subject End: 171 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V Q N Y V Q A M N L A V R E L S T - - L P L S N R L L R A T H E R L M Q G V R G E H K P P G E F R R S Q N W I G G T S L Q D A V F I P P ........................ Subject: UniRef90_Q60AL5 Cluster: Fic family protein; n=1; Methylococcus capsulatus|Rep: Fic family protein - Methylococcus capsulatus HSP 1 e-value: 2.0E-12 bit: 74.7 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 109 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L E H G M A R L K E G F - P L C N R L I R E L H A K L L A R G R G A G K A P G E F R A T Q N W I G G T R P G N A I F V P P P ..................... Subject: UniRef90_Q7D380 Cluster: AGR_pAT_556p; n=3; Agrobacterium tumefaciens str. C58|Rep: AGR_pAT_556p - Agrobacterium tumefaciens (strain C58 / ATCC 33970) HSP 1 e-value: 2.0E-12 bit: 74.3 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 112 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V D A M M Y G L Q R L E T - - L P M S L R L I R E M H A K L L H S G R G G T K D P G E F R R S Q N W I G G T R P G N A L F V P P P ..................... Subject: UniRef90_Q2DWF2 Cluster: Filamentation induced by cAMP protein Fic; n=1; Dehalococcoides sp. BAV1|Rep: Filamentation induced by cAMP protein Fic - Dehalococcoides sp. BAV1 HSP 1 e-value: 2.0E-12 bit: 74.3 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 107 Subject End: 176 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V Q N Y V R A M E Y G L K R L N E - - L P L S L R F I R E L H G I L M E G V R G E H A T R G E F R Q S Q N W I G S A G A T L N E A T F V P P P ..................... Subject: UniRef90_Q0ABC4 Cluster: Filamentation induced by cAMP protein Fic; n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Filamentation induced by cAMP protein Fic - Alkalilimnicola ehrlichei (strain MLHE-1) HSP 1 e-value: 6.0E-12 bit: 72.8 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 109 Subject End: 176 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V S N Y V A A L D H G L A R I G E G F - P L S N R L L R E M H A H L L S R G R G A E R Q P G A F R R S Q N W I G G T R P G N A H F V P P ........................ Subject: UniRef90_Q6YRQ6 Cluster: Sll6098 protein; n=1; Synechocystis sp. PCC 6803|Rep: Sll6098 protein - Synechocystis sp. (strain PCC 6803) HSP 1 e-value: 9.0E-11 bit: 68.9 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 107 Subject End: 175 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V V N Y I A A V N Y G L K R L Q S - - L P I S L R L I R E I H E K L M Q G V R G A E R S P G E F R R T Q N W I G A S G C G L Q D A S Y V P P ........................ Subject: UniRef90_Q3SQS7 Cluster: Filamentation induced by cAMP protein Fic; n=1; Nitrobacter winogradskyi Nb-255|Rep: Filamentation induced by cAMP protein Fic - Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) HSP 1 e-value: 1.0E-10 bit: 68.2 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 109 Subject End: 186 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I - T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V T N Y L D A L T Y A R T Q L G S K R G L P I S L R L L N E A H K R L M R G G R G A S K Q P G E I R R S Q N W I G G S R P G N A V Y V P P P S D K L P K L Subject: UniRef90_A1FY86 Cluster: Filamentation induced by cAMP protein Fic; n=1; Stenotrophomonas maltophilia R551-3|Rep: Filamentation induced by cAMP protein Fic - Stenotrophomonas maltophilia R551-3 HSP 1 e-value: 1.0E-10 bit: 68.2 Len: 210 Query Start:332 Query End:541 Subject Strand: null Subject Start: 107 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................... V Q N Y I K A L N F G I R K I T E G I - L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P N .................. ........................................................................................................................................................................................................................................................................................................................................... V T N Y L Q A F A Y V R D Q L K H D R G L P I S T R L L C E A H S I L L N S A R G E Q K L P G E V R R S Q N W I A G T R P G N A L Y V P P P H .................. Subject: UniRef90_Q4V0M6 Cluster: Hypothetical protein; n=2; Xanthomonas campestris pv. campestris|Rep: Hypothetical protein - Xanthomonas campestris pv. campestris (strain 8004) HSP 1 e-value: 2.0E-10 bit: 67.8 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 107 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I - L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V T N Y L Q A F K F V R E Q L Q A P T G L P I S L R L L A E A H R I L L A G V R G A H A L P G S M R T S Q N W I G G T R P G N A A F V P P P ..................... Subject: UniRef90_Q1Q4G3 Cluster: Hypothetical protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep: Hypothetical protein - Candidatus Kuenenia stuttgartiensis HSP 1 e-value: 3.0E-10 bit: 67.4 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 109 Subject End: 175 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V R N Y S E A M K H A I K D L E K - - L P L S S R L L C K T H E R L L P G V R G K H K M P G A F R K S Q N W I G G A S L N D A V F I P P ........................ Subject: UniRef90_Q08PQ3 Cluster: Fic family protein; n=1; Stigmatella aurantiaca DW4/3-1|Rep: Fic family protein - Stigmatella aurantiaca DW4/3-1 HSP 1 e-value: 1.0E-9 bit: 65.5 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 103 Subject End: 172 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V V N Y V R A M N H G L Q R L S A - - L P L S L R L L R E I H G R L M H G G R G S E R N P G E F R T S Q N W I G P Q G C S L V S A T F V P P P ..................... Subject: UniRef90_A3CXT7 Cluster: Filamentation induced by cAMP protein Fic; n=1; Methanoculleus marisnigri JR1|Rep: Filamentation induced by cAMP protein Fic - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) HSP 1 e-value: 1.0E-9 bit: 65.5 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 107 Subject End: 176 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V L N Y I K A L H H G I E K L - - G F S P L S L D L M N E I H R F L I Q G T R G S H K L P G R L R H V Q N W I G V P G G T I Q D A V F V P P P ..................... Subject: UniRef90_A2SBN3 Cluster: Hypothetical protein; n=1; Methylibium petroleiphilum PM1|Rep: Hypothetical protein - Methylibium petroleiphilum (strain PM1) HSP 1 e-value: 2.0E-9 bit: 64.7 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 106 Subject End: 176 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I - T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V T N Y L R A F R L V R D N L R S E A G L P I S V R L L C D A H R L L L D G A R G A G K Q P G E L R R S Q N W I G G A R P G R A A F V P P P ..................... Subject: UniRef90_Q3E412 Cluster: Filamentation induced by cAMP protein Fic; n=1; Chloroflexus aurantiacus J-10-fl|Rep: Filamentation induced by cAMP protein Fic - Chloroflexus aurantiacus J-10-fl HSP 1 e-value: 2.0E-9 bit: 64.7 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 117 Subject End: 186 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V L N Y V N A L E Y G L K R L E T - - L P V S L R L M R E L H E R L L A G V R G E R A T P G E F R R T Q N W I G S P G C T L N E A T F V P P P ..................... Subject: UniRef90_Q82T17 Cluster: Hypothetical protein; n=1; Nitrosomonas europaea|Rep: Hypothetical protein - Nitrosomonas europaea HSP 1 e-value: 2.0E-9 bit: 64.3 Len: 210 Query Start:329 Query End:538 Subject Strand: null Subject Start: 107 Subject End: 177 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I - L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ........................................................................................................................................................................................................................................................................................................................................ E V T N Y L R A F R W T Q E Q L R D P K G L P I S V R L L C E A H R R L L D G A R G A G K Q P G E L R R S Q N W I G G T R P G N A V F V P P P ..................... Subject: UniRef90_Q0YNM7 Cluster: Filamentation induced by cAMP protein Fic; n=1; Geobacter sp. FRC-32|Rep: Filamentation induced by cAMP protein Fic - Geobacter sp. FRC-32 HSP 1 e-value: 6.0E-9 bit: 62.8 Len: 204 Query Start:335 Query End:538 Subject Strand: null Subject Start: 115 Subject End: 184 .............................................................................................................................................................................................................................................................................................................................................. Q N Y I K A L N F G I R K I T E - G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D - A K H V P P P ..................... .............................................................................................................................................................................................................................................................................................................................................. K N Y V Y A L E H G L E Q V R E S G V S A F S C G L I K Q I H A R L M E K V A S F Q G I P G E F R D R Q N W I G G G L R I D Q A K F V P P P ..................... Subject: UniRef90_Q3A2P5 Cluster: Hypothetical protein; n=1; Pelobacter carbinolicus DSM 2380|Rep: Hypothetical protein - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) HSP 1 e-value: 2.0E-8 bit: 61.2 Len: 204 Query Start:329 Query End:532 Subject Strand: null Subject Start: 94 Subject End: 161 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P ........................... ........................................................................................................................................................................................................................................................................................................................................ E V L N Y R R A L N A S V K M M E D - - L P L C Q R I I R E A H R V L L D G V R G Q G K D P G E Y R K N Q N W I G P H G C T L E E A R F V P ........................... Subject: UniRef90_A3X0N9 Cluster: Hypothetical protein; n=1; Nitrobacter sp. Nb-311A|Rep: Hypothetical protein - Nitrobacter sp. Nb-311A HSP 1 e-value: 4.0E-8 bit: 60.1 Len: 204 Query Start:329 Query End:532 Subject Strand: null Subject Start: 94 Subject End: 161 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I - - G G S K P S D A K H V P ........................... ........................................................................................................................................................................................................................................................................................................................................ E V L N Y R A A L N E A T R L L A E - - L P L S Q R L I R Q T H G V L M Q G V R G R N K D P G E Y R R I A N W I G P G G C S V D E A R F V P ........................... Subject: UniRef90_Q2DHI7 Cluster: Fic family protein; n=1; Geobacter uraniumreducens Rf4|Rep: Fic family protein - Geobacter uraniumreducens Rf4 HSP 1 e-value: 5.0E-8 bit: 59.7 Len: 201 Query Start:338 Query End:538 Subject Strand: null Subject Start: 113 Subject End: 179 ................................................................................................................................................................................................................................................................................................................................................. N Y I K A L N F G I R K I T E - G I L P F S S R L I K E I H S I L L E - - D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P ..................... ................................................................................................................................................................................................................................................................................................................................................. N Y V R A L E Y G L Q K V R Q S G V P A L T C N L I K E L H A H L M D G V D Y N G T - - - P G E F R K R Q N W I G G G N I Y N A R F V P P P ..................... Subject: UniRef90_Q8DWU4 Cluster: Conserved domain protein; n=1; Streptococcus agalactiae serogroup V|Rep: Conserved domain protein - Streptococcus agalactiae serotype V HSP 1 e-value: 3.0E-7 bit: 57.0 Len: 225 Query Start:329 Query End:553 Subject Strand: null Subject Start: 100 Subject End: 183 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T - - - - - - - E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P - - - P P N Y M L N ...... ........................................................................................................................................................................................................................................................................................................................................ E I I N Y R K A L F Y A L E N I S T I N N I D S K G - L P L S N R I I K E M H K I L L D N V R G S S K N P G N F K R S Q N Y I G S V S S I S Y T P V P A E K T P E Y M S N ...... Subject: UniRef90_Q5L201 Cluster: Hypothetical conserved protein; n=1; Geobacillus kaustophilus|Rep: Hypothetical conserved protein - Geobacillus kaustophilus HSP 1 e-value: 4.0E-7 bit: 56.6 Len: 219 Query Start:338 Query End:556 Subject Strand: null Subject Start: 95 Subject End: 168 ................................................................................................................................................................................................................................................................................................................................................. N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E - D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P N Y M L N D ... ................................................................................................................................................................................................................................................................................................................................................. N Y Y E A L V A G M D A L K E - - I P I S T R L F K Q L H R I L L S N D V R G S H R S P G E F R R V Q N F L G P E G C T I E T A A Y I P P E P H L V N E ... Subject: UniRef90_Q2GBF2 Cluster: Filamentation induced by cAMP protein Fic; n=1; Novosphingobium aromaticivorans DSM 12444|Rep: Filamentation induced by cAMP protein Fic - Novosphingobium aromaticivorans (strain DSM 12444) HSP 1 e-value: 4.0E-7 bit: 56.6 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 94 Subject End: 162 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V L N Y R A A L R E A D S L M A E - - L P L S Q R L I K A T H R V L M D G V R G R H K D P G E Y R R I P N W I G P D G C T I E Q A R F V P P ........................ Subject: UniRef90_Q2FKW6 Cluster: Filamentation induced by cAMP protein Fic; n=1; Methanospirillum hungatei JF-1|Rep: Filamentation induced by cAMP protein Fic - Methanospirillum hungatei (strain JF-1 / DSM 864) HSP 1 e-value: 2.0E-6 bit: 54.7 Len: 231 Query Start:329 Query End:559 Subject Strand: null Subject Start: 105 Subject End: 183 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K H V P P P - - - - N Y M L N D L ........................................................................................................................................................................................................................................................................................................................................ E V T N Y M K A L Q T G F E R V K N E - - P I T L S L L C D L H R I L L T K V R G S K A L P G M I R P I Q N Q I G G D S L Y K A R Y I P P P Q E N V R F L L N N L Subject: UniRef90_Q478P8 Cluster: Filamentation induced by cAMP protein Fic; n=1; Dechloromonas aromatica RCB|Rep: Filamentation induced by cAMP protein Fic - Dechloromonas aromatica (strain RCB) HSP 1 e-value: 5.0E-6 bit: 53.1 Len: 228 Query Start:329 Query End:556 Subject Strand: null Subject Start: 93 Subject End: 168 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P P N Y M L N D ... ........................................................................................................................................................................................................................................................................................................................................ E V L N Y R K A L M L A Q E Q L Q G R P L R L S - - L L L H L H T I L M D S V R G Q N K T P G E F R K E Q N W I G R T G C S M E E A S F I P P S P L R L H D ... Subject: UniRef90_Q0W4B3 Cluster: Predicted cell division protein; n=1; uncultured methanogenic archaeon RC-I|Rep: Predicted cell division protein - Uncultured methanogenic archaeon RC-I HSP 1 e-value: 5.0E-6 bit: 53.1 Len: 207 Query Start:329 Query End:535 Subject Strand: null Subject Start: 92 Subject End: 160 ........................................................................................................................................................................................................................................................................................................................................ K V Q N Y I K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G - - G S K P S D A K H V P P ........................ ........................................................................................................................................................................................................................................................................................................................................ E V L N Y R K A M G H A V N E L K D H - - P L S I D M I R D L H R I L L S D V R G N N R W P G E I R R I Q N Y I G R P G S P I E K A I F V P P ........................ tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 206 End: 313 ............................................................................................................................................................................................................. M I Y L D K F K S G N K I K Q E L Y Y S F V P N L S M I F G N G I I Q I ...................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 441 End: 548 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L E E N I N I Q E S I E L V K I G L E E V N H L M Q S M F H L Q I I C ........... Protein_Len: 60 Strand: + Start: 344 End: 559 ....................................................................................................................................................................................................................................................................................................................................................... M K A L N F G I R K I T E G I L P F S S R L I K E I H S I L L E D V R G K Y K Y P G E Y R I S Q N W I G G S K P S D A K Protein_Len: 36 Strand: - Start: 437 End: 544 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... F I N S S F I F I W S L I S N T L I P N S S T F W R I C L M N W R W I M ............... Protein_Len: 46 Strand: - Start: 343 End: 480 ...................................................................................................................................................................................................................................................................................................................................................... I L A K F K P I L F I V S P I S G N E L L N I F S I C E I K N S S T L P F Y L Y G P S Y L M ............................................................................... Protein_Len: 31 Strand: - Start: 228 End: 320 ................................................................................................................................................................................................................................... I Q Y Y F L V L V K S S R Q V L N I L S K Q F H S L E S I F M ............................................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 146 End: 277 ................................................................................................................................................. L F I L L I H Y N L I F K I I F L L S F H Y I K I F K F R T I F Y F L F K V V G K Y W M .......................................................................................................................................................................................................................................................................................... Protein_Len: 51 Strand: - Start: 19 End: 171 .................. L T T Y Y L R Y F I T N I S Y N R D A G N K Y L Y I K F K R D K S Q I Y L T I C Y K S F F L C F T I M .................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 9 End: 182 ........ V S S Y L L T I Y D I F Y P T S L I I E I L A M K I Y T Y K L S E I K V K F I Y L S V I S L S F Y A F H S L K F Y M ......................................................................................................................................................................................................................................................................................................................................................................................... tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 459 End: 488 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACTAATTCTATACTCTCCTGGATATT....................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 111 End: 140 ..............................................................................................................CTTTACTTTGAATATATAAAGTGATACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 82 Start: 517 End: 533 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAACATGCTTTGCA.......................... tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 72 HP_score: -6.2 Tail_Score: -4.49939 Start: 46 End: 81 Full_Region: atatacttatataaa aatggcgctgatagaa atta ttctatcaacaccata ttttatagattatat .............................................aatggcgctgatagaaattattctatcaacaccata.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -13.2 Tail_Score: -4.99638 Start: 48 End: 79 Full_Region: ATAATCTATAAAATA TGGTGTTGATAGAA TAAT TTCTATCAGCGCCA TTTTTATATAAGTAT ...............................................TGGTGTTGATAGAATAATTTCTATCAGCGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 81 HP_score: -8.8 Tail_Score: -3.84906 Start: 48 End: 79 Full_Region: atacttatataaaaa tggcgctgatagaa atta ttctatcaacacca tattttatagattat ...............................................tggcgctgatagaaattattctatcaacacca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 44 HP_score: -3.0 Tail_Score: -3.34812 Start: 389 End: 405 Full_Region: atctcttttattaat ctacta gaaaa tggtag tattccttctgttat ....................................................................................................................................................................................................................................................................................................................................................................................................ctactagaaaatggtag.......................................................................................................................................................... TransTerm Strand: - Conf: 41 HP_score: -2.1 Tail_Score: -3.29471 Start: 411 End: 433 Full_Region: tctaacatcttctaa taaaataga atgta tctctttta ttaatctactagaaa ..........................................................................................................................................................................................................................................................................................................................................................................................................................taaaatagaatgtatctctttta.............................................................................................................................. Find igs database================================================ Query_seq: FN0254:FN0255|FN0254:FN0255:Fusobacterium outer membrane protein family:Hypothetical cytosolic protein:->->:881451..882009 559 tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagagaaaaataagcaaaatgtgataatttaaaataaatttaataataaaaaggagtgaaaaatgatatatcttgataaatttaaatctggtaataaaataaaacaagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 327 Len: 327 Subject: NC_003454_FN0254_FN0255|Fusobacterium outer membrane protein family:Hypothetical cytosolic protein|POSITIVE:POSITIVE|[881451,882009]|559 HSP 1 e-value: 3.0E-78 bit: 293.0 Len: 148 Query Start:1 Query End:148 Subject Strand: POSITIVE Subject Start: 1 Subject End: 148 tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagag........................................................................................................................................................................................................................................................................................................................................................................................................................... tatctctaaacagagctataaagtagtgtaatataatctataaaatatggtgttgatagaataatttctatcagcgccatttttatataagtatattttaaactttctatctttactttgaatatataaagtgatacaatacttagag........................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-37 bit: 159.0 Len: 80 Query Start:248 Query End:327 Subject Strand: POSITIVE Subject Start: 248 Subject End: 327 .......................................................................................................................................................................................................................................................caagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttatta........................................................................................................................................................................................................................................ .......................................................................................................................................................................................................................................................caagaactttactactcctttgtaccaaatttatcaatgatttttggaaatgggataattcagatataaatattttatta........................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUCUCUAAACAGAGCUAUAAAGUAGUGUAAUAUAAUCUAUAAAAUAUGGUGUUGAUAGAAUAAUUUCUAUCAGCGCCAUUUUUAUAUAAGUAUAUUUUAAACUUUCUAUCUUUACUUUGAAUAUAUAAAGUGAUACAAUACUUAGAGAAAAAUAAGCAAAAUGUGAUAAUUUAAAAUAAAUUUAAUAAUAAAAAGGAGUGAAAAAUGAUAUAUCUUGAUAAAUUUAAAUCUGGUAAUAAAAUAAAACAAGAACUUUACUACUCCUUUGUACCAAAUUUAUCAAUGAUUUUUGGAAAUGGGAUAAUUCAGAUAUAAAUAUUUUAUUA ..(((((((..(((.....(((((.....((((((...(((((((.(((((((((((((((....))))))))))))))))))))))....))))))....)))))...)))((((((((......))))))))........)))))))........(((((..((((((.(((((.....)))))......(((((((((..........((((..(((........))).))))......((((........)))).))))))))).........)))))).....)))))..(((((((((.............))))))))). (-60.62) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUAAAAUAUUUAUAUCUGAAUUAUCCCAUUUCCAAAAAUCAUUGAUAAAUUUGGUACAAAGGAGUAGUAAAGUUCUUGUUUUAUUUUAUUACCAGAUUUAAAUUUAUCAAGAUAUAUCAUUUUUCACUCCUUUUUAUUAUUAAAUUUAUUUUAAAUUAUCACAUUUUGCUUAUUUUUCUCUAAGUAUUGUAUCACUUUAUAUAUUCAAAGUAAAGAUAGAAAGUUUAAAAUAUACUUAUAUAAAAAUGGCGCUGAUAGAAAUUAUUCUAUCAACACCAUAUUUUAUAGAUUAUAUUACACUACUUUAUAGCUCUGUUUAGAGAUA ................(((((((................(((...(((((((((((((.((((((((.(.((((((((((....((((.(((....)))..))))....)))))......))))).)))))))))....)))))))))))))..........(((...((((((........)))))).)))...(((((........)))))...)))..(((((....((((((....(((((((((((.(.((((((((....)))))))).).)))).)))))))...)))))).....)))))........))))))).... (-54.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 407 90 41 209 158 NC_003454:FN0275|5end_Transposase_901560..901790_NEGATIVE 393 90 41 212 161 NC_003454:FN0599|5end_Transposase_1253833..1254063_POSITIVE 247 98 61 159 124 NC_003454:FN0717|5end_Ribosomal_small_subunit_pseudouridine_synthase_A_1374913..1375143_POSITIVE 224 120 71 93 51 NC_003454:FN0179|5end_Ankyrin_repeat_proteins_804790..805020_NEGATIVE 220 83 41 94 55 NC_003454:FN0812|5end_Hypothetical_cytosolic_protein_1471051..1471281_POSITIVE 218 58 11 57 10 NC_003454:FN0815|5end_Propionate_permease_1474390..1474620_POSITIVE 210 80 33 58 8 NC_003454:FN0113|5end_Heat-inducible_transcription_repressor_hrcA_746557..746787_POSITIVE 209 38 3 218 177 NC_003454:FN1374|5end_Transcriptional_regulator_2022301..2022531_NEGATIVE 207 86 51 219 189 NC_003454:FN0063|5end_hypothetical_protein_698982..699212_POSITIVE 198 292 253 61 18 NC_003454:FN0573|5end_hypothetical_protein_1222518..1222748_POSITIVE 194 118 77 110 75 NC_003454:FN1308|5end_Phosphatidate_cytidylyltransferase_1964140..1964370_POSITIVE 194 83 47 159 114 NC_003454:FN0530|5end_hypothetical_protein_1186275..1186505_POSITIVE 194 83 47 159 114 NC_003454:FN0404|5end_hypothetical_protein_1042213..1042443_POSITIVE 194 83 47 159 114 NC_003454:FN0373|5end_hypothetical_protein_1002385..1002615_POSITIVE 194 83 47 159 114 NC_003454:FN1510|5end_hypothetical_protein_14311..14541_NEGATIVE 193 106 65 64 30 NC_003454:FN0349|5end_D-tyrosyl-tRNA_deacylase_981792..982022_POSITIVE 190 144 103 138 103 NC_003454:FN0874|5end_Phosphohydrolase_(MUTT/NUDIX_family_protein)_1534887..1535117_NEGATIVE 189 128 90 188 151 NC_003454:FN0363|5end_ATP_synthase_C_chain,_sodium_ion_specific_993703..993933_NEGATIVE 188 38 8 43 8 NC_003454:FN0354|5end_Hypothetical_membrane-spanning_protein_985292..985522_POSITIVE 188 100 52 190 129 NC_003454:FN0078|5end_Ethanolamine_utilization_protein_eutA_716205..716435_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 483 90 47 80 35 NC_003454:FN0123|3end_ATPase_755027..755177_POSITIVE 416 87 41 52 6 NC_003454:FN0254|3end_Fusobacterium_outer_membrane_protein_family_881390..881540_POSITIVE 401 90 41 87 36 NC_003454:FN0120|3end_hypothetical_protein_752718..752868_NEGATIVE 383 86 49 88 47 NC_003454:FN0904|3end_NAD(FAD)-utilizing_dehydrogenase_1563760..1563910_POSITIVE 366 90 42 87 41 NC_003454:FN0927|3end_hypothetical_protein_1581693..1581843_NEGATIVE 355 90 47 68 23 NC_003454:FN0299|3end_Aspartyl-tRNA_synthetase_934251..934401_POSITIVE 339 86 41 94 44 NC_003454:FN0905|3end_hypothetical_protein_1563781..1563931_NEGATIVE 305 90 47 51 5 NC_003454:FN0119|3end_Flavodoxin_752647..752797_POSITIVE 288 79 39 80 44 NC_003454:FN0926|3end_GTP_pyrophosphokinase_1581671..1581821_POSITIVE 253 119 73 59 18 NC_003454:FN1512|3end_Phophatidylinositol-4-phosphate_5-kinase_17115..17265_POSITIVE 229 88 41 72 25 NC_003454:FN1913|3end_hydrolase_(HD_superfamily)_410054..410204_NEGATIVE 220 83 41 71 32 NC_003454:FN0811|3end_hypothetical_protein_1471108..1471258_POSITIVE 213 90 47 72 31 NC_003454:FN0049|3end_hypothetical_protein_686919..687069_POSITIVE 207 86 51 132 102 NC_003454:FN0062|3end_Hypothetical_cytosolic_protein_698975..699125_POSITIVE 193 79 54 151 120 NC_003454:FN1380|3end_Citrate_lyase_beta_chain_2028878..2029028_POSITIVE 191 87 61 150 124 NC_003454:FN0716|3end_Phophatidylinositol-4-phosphate_5-kinase_1374993..1375143_POSITIVE 190 144 103 136 101 NC_003454:FN0875|3end_23S_rRNA_methyltransferase_1534889..1535039_NEGATIVE 190 113 72 118 79 NC_003454:FN0211|3end_Plasmid_addiction_system_poison_protein_837570..837720_POSITIVE 189 128 90 134 97 NC_003454:FN0364|3end_ATP_synthase_A_chain,_sodium_ion_specific_993757..993907_NEGATIVE 188 100 52 77 16 NC_003454:FN0077|3end_Ethanolamine_two-component_sensor_kinase_716172..716322_POSITIVE