Origin IGS: ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaggtgaatccaacagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcagaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaaaaggagataaggcagaaaaatatccatttgaaggaatatttacaagagatacaaatttattcaatagatatatgcctacaaatagtgaaaattattcattattgcctaaatcaagtaaccctagaactgctacttcaaattcaagagcaaatctaaatggatatgggattgcaagcactcaacctgtcccagaaccatctgttgaaacagaagtaaatgctggaataaatcctaaaagtataaataaagtacctttaaatattgctgctaaagttgcaaattcaccaatattaccagaggcagtaaaatttgcacctatagatccaaaaatagttatacctgctgatccagatttaccagaagcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaaatgtataaagaatctaatacttcagctttacctgcaccacctgatggaggaaatacatattattttaactcatataactttggtggaacaaaagaatttgcaagtggtgttgtaaattcacaaggaacagataaaaaccatcaacacttctttataggaggatctagattttgggaaattgataatagatcttcaggaacatttgaatttccaaatggaaaaacattaaatttgggaggaattcttactcttggtcttgtatcacaggaaaatggaacagaattgaaaaactctggaacaatgactgatatagaggaaaaagatgagaaatggattaaagaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttctttaatccatttctcatctttttcctctatatcagtcattgttccagagtttttcaattctgttccattttcctgtgatacaagaccaagagtaagaattcctcccaaatttaatgtttttccatttggaaattcaaatgttcctgaagatctattatcaatttcccaaaatctagatcctcctataaagaagtgttgatggtttttatctgttccttgtgaatttacaacaccacttgcaaattcttttgttccaccaaagttatatgagttaaaataatatgtatttcctccatcaggtggtgcaggtaaagctgaagtattagattctttatacattttaaatgcataagatttttctgctccactattatttcgccaagtatagtgtaaaattacatctatattttgtttacttgcattatctcctgagcttaaaaatcctccttttgtattttgtctaggagtactactattactattacatccttcattacaatctgcacctagtactactgaaaatttaggtgcttctggtaaatctggatcagcaggtataactatttttggatctataggtgcaaattttactgcctctggtaatattggtgaatttgcaactttagcagcaatatttaaaggtactttatttatacttttaggatttattccagcatttacttctgtttcaacagatggttctgggacaggttgagtgcttgcaatcccatatccatttagatttgctcttgaatttgaagtagcagttctagggttacttgatttaggcaataatgaataattttcactatttgtaggcatatatctattgaataaatttgtatctcttgtaaatattccttcaaatggatatttttctgccttatctccttttcctttatatgtaccattccatttactgtacatatagtttattccaaattgccatgacatccaaggtgattttactacttgatccccttgttccattaattgtattaattctaatcttaagcctgctaaactttctgagttttctgctcttgcttcgtctatcttagattgcaaacttcctactgagtttcttaaattttctcttgatgtcgctatttcttctcttgttggtactccatttgctgttggattcacctcttcagaaaaagctcctactcccatcattaagaataatattgctaaacctagtgaatattttacacttttgtatctttttgctattgaacgtaaagtgttttctactttatatagattattatttcccatctcgacccc Mask Tandem Repeat Region ================================================ ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaggtgaatccaacagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcagaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaaaaggagataaggcagaaaaatatccatttgaaggaatatttacaagagatacaaatttattcaatagatatatgcctacaaatagtgaaaattattcattattgcctaaatcaagtaaccctagaactgctacttcaaattcaagagcaaatctaaatggatatgggattgcaagcactcaacctgtcccagaaccatctgttgaaacagaagtaaatgctggaataaatcctaaaagtataaataaagtacctttaaatattgctgctaaagttgcaaattcaccaatattaccagaggcagtaaaatttgcacctatagatccaaaaatagttatacctgctgatccagatttaccagaagcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaaatgtataaagaatctaatacttcagctttacctgcaccacctgatggaggaaatacatattattttaactcatataactttggtggaacaaaagaatttgcaagtggtgttgtaaattcacaaggaacagataaaaaccatcaacacttctttataggaggatctagattttgggaaattgataatagatcttcaggaacatttgaatttccaaatggaaaaacattaaatttgggaggaattcttactcttggtcttgtatcacaggaaaatggaacagaattgaaaaactctggaacaatgactgatatagaggaaaaagatgagaaatggattaaagaa Find is-nt database================================================ Query_seq: FN0253:FN0254|FN0253:FN0254:Outer membrane protein:Fusobacterium outer membrane protein family:->->:875124..876416 1293 ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaggtgaatccaacagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcagaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaaaaggagataaggcagaaaaatatccatttgaaggaatatttacaagagatacaaatttattcaatagatatatgcctacaaatagtgaaaattattcattattgcctaaatcaagtaaccctagaactgctacttcaaattcaagagcaaatctaaatggatatgggattgcaagcactcaacctgtcccagaaccatctgttgaaacagaagtaaatgctggaataaatcctaaaagtataaataaagtacctttaaatattgctgctaaagttgcaaattcaccaatattaccagaggcagtaaaatttgcacctatagatccaaaaatagttatacctgctgatccagatttaccagaagcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaaatgtataaagaatctaatacttcagctttacctgcaccacctgatggaggaaatacatattattttaactcatataactttggtggaacaaaagaatttgcaagtggtgttgtaaattcacaaggaacagataaaaaccatcaacacttctttataggaggatctagattttgggaaattgataatagatcttcaggaacatttgaatttccaaatggaaaaacattaaatttgggaggaattcttactcttggtcttgtatcacaggaaaatggaacagaattgaaaaactctggaacaatgactgatatagaggaaaaagatgagaaatggattaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: FN0253:FN0254|FN0253:FN0254:Outer membrane protein:Fusobacterium outer membrane protein family:->->:875124..876416 1293 ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaggtgaatccaacagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcagaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaaaaggagataaggcagaaaaatatccatttgaaggaatatttacaagagatacaaatttattcaatagatatatgcctacaaatagtgaaaattattcattattgcctaaatcaagtaaccctagaactgctacttcaaattcaagagcaaatctaaatggatatgggattgcaagcactcaacctgtcccagaaccatctgttgaaacagaagtaaatgctggaataaatcctaaaagtataaataaagtacctttaaatattgctgctaaagttgcaaattcaccaatattaccagaggcagtaaaatttgcacctatagatccaaaaatagttatacctgctgatccagatttaccagaagcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaaatgtataaagaatctaatacttcagctttacctgcaccacctgatggaggaaatacatattattttaactcatataactttggtggaacaaaagaatttgcaagtggtgttgtaaattcacaaggaacagataaaaaccatcaacacttctttataggaggatctagattttgggaaattgataatagatcttcaggaacatttgaatttccaaatggaaaaacattaaatttgggaggaattcttactcttggtcttgtatcacaggaaaatggaacagaattgaaaaactctggaacaatgactgatatagaggaaaaagatgagaaatggattaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: FN0253:FN0254|FN0253:FN0254:Outer membrane protein:Fusobacterium outer membrane protein family:->->:875124..876416 1293 ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgatgggagtaggagctttttctgaagaggtgaatccaacagcaaatggagtaccaacaagagaagaaatagcgacatcaagagaaaatttaagaaactcagtaggaagtttgcaatctaagatagacgaagcaagagcagaaaactcagaaagtttagcaggcttaagattagaattaatacaattaatggaacaaggggatcaagtagtaaaatcaccttggatgtcatggcaatttggaataaactatatgtacagtaaatggaatggtacatataaaggaaaaggagataaggcagaaaaatatccatttgaaggaatatttacaagagatacaaatttattcaatagatatatgcctacaaatagtgaaaattattcattattgcctaaatcaagtaaccctagaactgctacttcaaattcaagagcaaatctaaatggatatgggattgcaagcactcaacctgtcccagaaccatctgttgaaacagaagtaaatgctggaataaatcctaaaagtataaataaagtacctttaaatattgctgctaaagttgcaaattcaccaatattaccagaggcagtaaaatttgcacctatagatccaaaaatagttatacctgctgatccagatttaccagaagcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaaatgtataaagaatctaatacttcagctttacctgcaccacctgatggaggaaatacatattattttaactcatataactttggtggaacaaaagaatttgcaagtggtgttgtaaattcacaaggaacagataaaaaccatcaacacttctttataggaggatctagattttgggaaattgataatagatcttcaggaacatttgaatttccaaatggaaaaacattaaatttgggaggaattcttactcttggtcttgtatcacaggaaaatggaacagaattgaaaaactctggaacaatgactgatatagaggaaaaagatgagaaatggattaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 115 Max: 1257 Len: 1143 Subject: UniRef90_Q7P365 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 3.0E-64 bit: 248.0 Len: 645 Query Start:115 Query End:759 Subject Strand: null Subject Start: 1 Subject End: 217 .................................................................................................................. M G V G A F S E E V N - - P T A N G V P T R E E I A T S R E N L R N S V G S L Q S K I D E A R A E N S E S L A G L R L E L I Q L M E Q G D Q V V K S P W M S W Q F G I N Y M Y S K W N G T Y K G K G D K A E K Y P F E G I F T R D T N L F N R Y M P T N S E N Y S L L P K S S N P R T A T S N S R A N L - N G Y G I A S T Q P V P E P S V E T E V N A G I N P K S I N K V P L N I A A K V A N S P I L P E A V K F A P I D P K I V I P A D P D L P E ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................. M G G S A F S E E I N N E S T Q N T I P T R E Q I A S S K E N L K N S V G S L Q S K I D S A R T E N E K S L A G L K L E L I Q L M E Q G D Q V V K S P W M S W Q F G A N Y M Y S K W N G T Y K G K A D K A E K Y P F E G M F A R S T N L F E R V I S P L S E K Y K G L A T S T N P H S A S S N A R N G L G S G Y G L A S T A P R Q E P L V A I N I E A S I R P K D V T R S A V S A P T V G V G A P R L - D T L N V P S S E P L S V T P P N P K A P E ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7P2K3 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC 49256 HSP 1 e-value: 4.0E-36 bit: 155.0 Len: 306 Query Start:952 Query End:1257 Subject Strand: null Subject Start: 1 Subject End: 102 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y K E S N T S A L P A P P D G G N T Y Y F N S Y N F G G T K E F A S G V V N S Q G T D K N H Q H F F I G G S R F W E I D N R S S G T F E F P X X X X X X X X X X X X X X X V S Q E N G T E L K N S G T M T .................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y K E G D T T V L P A P P G G G N T Y Y F N S Y N F G G T K E F A N G V V N S Q G I N K N N Q Y F F I G G S R F W E I D N N S S G T Y E L P N G K K L N L G G I L T L G L V S Q E N G T E L K N S G T I T .................................... ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatagaggaaaaagatgagaaatggattaaagaa Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 282 End: 371 ......................................................................................................................................................................................................................................................................................... M R I N T I N G T R G S S S K I T L D V M A I W N K L Y V Q .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 362 End: 550 ......................................................................................................................................................................................................................................................................................................................................................................... M C T V N G M V H I K E K E I R Q K N I H L K E Y L Q E I Q I Y S I D I C L Q I V K I I H Y C L N Q V T L E L L L Q I Q ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 905 End: 1063 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L G E I I V E Q K N L M H L K C I K N L I L Q L Y L H H L M E E I H I I L T H I T L V E Q K N L Q V V L ...................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 1158 End: 1256 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S K W K N I K F G R N S Y S W S C I T G K W N R I E K L W N N D ..................................... Protein_Len: 60 Strand: + Start: 10 End: 1293 ......... M G N N N L Y K V E N T L R S I A K R Y K S V K Y S L G L A I L F L M M G V G A F S E E V N P T A N G V P T R E E I A T Protein_Len: 60 Strand: - Start: 1095 End: 1286 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P P D L N Q S I S L L D E P V N S N G F P F V N F K P P I R V R P R T D C S F P V S N F F E P V I V S I S S F S S F H M ....... Protein_Len: 39 Strand: - Start: 830 End: 946 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. V F Y L L L I K L S L L Y H L Y V F Y L H L K V S Y K A F Y Y H L L F I K H M ........................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 579 End: 896 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S G F I T I G A S G S K G S A G L N E T T S P A S Q L S P H L L L L L V G L C F V F P P N K L E P S L A L L C F I S T M ............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: - Start: 553 End: 642 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I S I P N C A S L R D W F W R N F C F Y I S S Y I R F T Y M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 363 End: 470 .......................................................................................................................................................................................................................................................................................................................................................................... I Y L L H F P V Y L P F P S L A S F Y G N S P I N V L S V F K N L L Y M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 343 End: 453 ...................................................................................................................................................................................................................................................................................................................................................... P L K S Y V I H V T F P I T C I F S F S I L C F F I W K F S Y K C S I C M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 233 End: 436 ........................................................................................................................................................................................................................................ S L F N L L S L I L I L V I L P V L P D L L L I V K S T M A I Q F L S Y T C Y I S H Y M Y L F L L Y P L F I D M Q L F M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 302 .. P A K E S S T F G V A F P T G V L S S I A V D L S F K L F E T P L K C D L I S S A L A S F E S L K A P K L N S N I C N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 229 . N L L L F I C F H L I N V L N L L I I R L S P L L L K K Q L P S D L L L H L V L L L L F L S M L L F N L F S L L F N A M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatagaggaaaaagatgagaaatggattaaagaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 677 End: 706 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACCAATATTACCAGAGGCAGTAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 84 Start: 153 End: 169 ........................................................................................................................................................TTGGTACTCCATTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatagaggaaaaagatgagaaatggattaaagaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 43 HP_score: -2.5 Tail_Score: -3.07935 Start: 480 End: 498 Full_Region: ATATATGCCTACAAA TAGTGAA AATTA TTCATTA TTGCCTAAATCAAGT ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAAATTATTCATTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 63 HP_score: -3.4 Tail_Score: -4.63218 Start: 1045 End: 1070 Full_Region: ttatctgttccttgt gaatttacaa caccac ttgcaaattc ttttgttccaccaaa ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaatttacaacaccacttgcaaattc............................................................................................................................................................................................................................... Find igs database================================================ Query_seq: FN0253:FN0254|FN0253:FN0254:Outer membrane protein:Fusobacterium outer membrane protein family:->->:875124..876416 1293 ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatagaggaaaaagatgagaaatggattaaagaa Intra-Species Hit: Count: 3 Min: 1 Max: 1293 Len: 1293 Subject: NC_003454_FN0253_FN0254|Outer membrane protein:Fusobacterium outer membrane protein family|POSITIVE:POSITIVE|[875124,876416]|1293 HSP 1 e-value: 1.0E-103 bit: 379.0 Len: 191 Query Start:761 Query End:951 Subject Strand: POSITIVE Subject Start: 761 Subject End: 951 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaa...................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cacctaaattttcagtagtactaggtgcagattgtaatgaaggatgtaatagtaatagtagtactcctagacaaaatacaaaaggaggatttttaagctcaggagataatgcaagtaaacaaaatatagatgtaattttacactatacttggcgaaataatagtggagcagaaaaatcttatgcatttaaa...................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-57 bit: 224.0 Len: 113 Query Start:1 Query End:113 Subject Strand: POSITIVE Subject Start: 1 Subject End: 113 ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ggggtcgagatgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 2.0E-10 bit: 69.9 Len: 35 Query Start:1259 Query End:1293 Subject Strand: POSITIVE Subject Start: 1259 Subject End: 1293 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatagaggaaaaagatgagaaatggattaaagaa ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atatagaggaaaaagatgagaaatggattaaagaa Subject: NC_003454_FN2058_FN2059|Fusobacterium outer membrane protein family:Outer membrane protein|NEGATIVE:NEGATIVE|[571186,572966]|1781 HSP 1 e-value: 3.0E-49 bit: 198.0 Len: 104 Query Start:10 Query End:113 Subject Strand: NEGATIVE Subject Start: 1658 Subject End: 1761 .........atgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........atgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatataaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_003454_FN2047_FN2048|Fusobacterium outer membrane protein family:Outer membrane protein|NEGATIVE:NEGATIVE|[556474,558890]|2417 HSP 1 e-value: 3.0E-49 bit: 198.0 Len: 104 Query Start:10 Query End:113 Subject Strand: NEGATIVE Subject Start: 2294 Subject End: 2397 .........atgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatacaaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .........atgggaaataataatctatataaagtagaaaacactttacgttcaatagcaaaaagatataaaagtgtaaaatattcactaggtttagcaatattattcttaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGGGUCGAGAUGGGAAAUAAUAAUCUAUAUAAAGUAGAAAACACUUUACGUUCAAUAGCAAAAAGAUACAAAAGUGUAAAAUAUUCACUAGGUUUAGCAAUAUUAUUCUUAAUGAUGGGAGUAGGAGCUUUUUCUGAAGAGGUGAAUCCAACAGCAAAUGGAGUACCAACAAGAGAAGAAAUAGCGACAUCAAGAGAAAAUUUAAGAAACUCAGUAGGAAGUUUGCAAUCUAAGAUAGACGAAGCAAGAGCAGAAAACUCAGAAAGUUUAGCAGGCUUAAGAUUAGAAUUAAUACAAUUAAUGGAACAAGGGGAUCAAGUAGUAAAAUCACCUUGGAUGUCAUGGCAAUUUGGAAUAAACUAUAUGUACAGUAAAUGGAAUGGUACAUAUAAAGGAAAAGGAGAUAAGGCAGAAAAAUAUCCAUUUGAAGGAAUAUUUACAAGAGAUACAAAUUUAUUCAAUAGAUAUAUGCCUACAAAUAGUGAAAAUUAUUCAUUAUUGCCUAAAUCAAGUAACCCUAGAACUGCUACUUCAAAUUCAAGAGCAAAUCUAAAUGGAUAUGGGAUUGCAAGCACUCAACCUGUCCCAGAACCAUCUGUUGAAACAGAAGUAAAUGCUGGAAUAAAUCCUAAAAGUAUAAAUAAAGUACCUUUAAAUAUUGCUGCUAAAGUUGCAAAUUCACCAAUAUUACCAGAGGCAGUAAAAUUUGCACCUAUAGAUCCAAAAAUAGUUAUACCUGCUGAUCCAGAUUUACCAGAAGCACCUAAAUUUUCAGUAGUACUAGGUGCAGAUUGUAAUGAAGGAUGUAAUAGUAAUAGUAGUACUCCUAGACAAAAUACAAAAGGAGGAUUUUUAAGCUCAGGAGAUAAUGCAAGUAAACAAAAUAUAGAUGUAAUUUUACACUAUACUUGGCGAAAUAAUAGUGGAGCAGAAAAAUCUUAUGCAUUUAAAAUGUAUAAAGAAUCUAAUACUUCAGCUUUACCUGCACCACCUGAUGGAGGAAAUACAUAUUAUUUUAACUCAUAUAACUUUGGUGGAACAAAAGAAUUUGCAAGUGGUGUUGUAAAUUCACAAGGAACAGAUAAAAACCAUCAACACUUCUUUAUAGGAGGAUCUAGAUUUUGGGAAAUUGAUAAUAGAUCUUCAGGAACAUUUGAAUUUCCAAAUGGAAAAACAUUAAAUUUGGGAGGAAUUCUUACUCUUGGUCUUGUAUCACAGGAAAAUGGAACAGAAUUGAAAAACUCUGGAACAAUGACUGAUAUAGAGGAAAAAGAUGAGAAAUGGAUUAAAGAA .(((((...(((((.........(((((.....)))))....(((((...((((((((..............((((.........)))).(((((.....(((((....)))))..((((.((((.(((.(((((.....((((..((((........)))).)))).........))))).)))........(((.........(.....)........(((((((((((.........((((....(((((.(((((.....)))))...(((.(((.((((................((((..(((((.(((...........))).)))))....))))((((((...((((((..(((((((((.((.......)).)))))))))...............(((((.....(((((...(((((.((((((((.....)))))....))).)))))..))))).)))))..............))))))...))))))..))))...))).)))....))))).))))..((((((((.....)))...)))))...))))))))))).)))..)))))))).)))))..))))))))...))))).....((((((((.....((((.((((.......)))).))))....((((.((....)).)))).........)))).))))..((((......)))).))))).)))))..............((..(((((((......(((((.(((((((.(((......)))..)))))))......(((((.((((.(((.((....))....)))))))...((((.....(((((((...............(((......((((((.........(((.((((....)))))))))))))..((((((((((((((((.........((((((((.....)))))))).(((........))).))))))).....((.((....)).)).......)))))))))..)))........(((((((.......((((((((((......)))))))))).(........).......)))))))..)))))))....(((((((((....(..(....)..)...))))))))).......))))..(((((....)))))..)))))..)))))......((((((.((((..((((.(((..(((...(.((...((((.((....)).))))...)).)..)))..))).))))..)))))))))).))))))).)).. (-279.14) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUUUAAUCCAUUUCUCAUCUUUUUCCUCUAUAUCAGUCAUUGUUCCAGAGUUUUUCAAUUCUGUUCCAUUUUCCUGUGAUACAAGACCAAGAGUAAGAAUUCCUCCCAAAUUUAAUGUUUUUCCAUUUGGAAAUUCAAAUGUUCCUGAAGAUCUAUUAUCAAUUUCCCAAAAUCUAGAUCCUCCUAUAAAGAAGUGUUGAUGGUUUUUAUCUGUUCCUUGUGAAUUUACAACACCACUUGCAAAUUCUUUUGUUCCACCAAAGUUAUAUGAGUUAAAAUAAUAUGUAUUUCCUCCAUCAGGUGGUGCAGGUAAAGCUGAAGUAUUAGAUUCUUUAUACAUUUUAAAUGCAUAAGAUUUUUCUGCUCCACUAUUAUUUCGCCAAGUAUAGUGUAAAAUUACAUCUAUAUUUUGUUUACUUGCAUUAUCUCCUGAGCUUAAAAAUCCUCCUUUUGUAUUUUGUCUAGGAGUACUACUAUUACUAUUACAUCCUUCAUUACAAUCUGCACCUAGUACUACUGAAAAUUUAGGUGCUUCUGGUAAAUCUGGAUCAGCAGGUAUAACUAUUUUUGGAUCUAUAGGUGCAAAUUUUACUGCCUCUGGUAAUAUUGGUGAAUUUGCAACUUUAGCAGCAAUAUUUAAAGGUACUUUAUUUAUACUUUUAGGAUUUAUUCCAGCAUUUACUUCUGUUUCAACAGAUGGUUCUGGGACAGGUUGAGUGCUUGCAAUCCCAUAUCCAUUUAGAUUUGCUCUUGAAUUUGAAGUAGCAGUUCUAGGGUUACUUGAUUUAGGCAAUAAUGAAUAAUUUUCACUAUUUGUAGGCAUAUAUCUAUUGAAUAAAUUUGUAUCUCUUGUAAAUAUUCCUUCAAAUGGAUAUUUUUCUGCCUUAUCUCCUUUUCCUUUAUAUGUACCAUUCCAUUUACUGUACAUAUAGUUUAUUCCAAAUUGCCAUGACAUCCAAGGUGAUUUUACUACUUGAUCCCCUUGUUCCAUUAAUUGUAUUAAUUCUAAUCUUAAGCCUGCUAAACUUUCUGAGUUUUCUGCUCUUGCUUCGUCUAUCUUAGAUUGCAAACUUCCUACUGAGUUUCUUAAAUUUUCUCUUGAUGUCGCUAUUUCUUCUCUUGUUGGUACUCCAUUUGCUGUUGGAUUCACCUCUUCAGAAAAAGCUCCUACUCCCAUCAUUAAGAAUAAUAUUGCUAAACCUAGUGAAUAUUUUACACUUUUGUAUCUUUUUGCUAUUGAACGUAAAGUGUUUUCUACUUUAUAUAGAUUAUUAUUUCCCAUCUCGACCCC (((((((..............(((((.((((......(((.((((..(((((((....)))))))...(((......)))..)))))))..)))).)))))................((..(((((....)))))..)).........((.((((((...................)))))).))...)))))))..(((((.(((((((.((((......(((((((((.........((((((((((.........(((((.(((((..(((........................((((((((((((((((((...((((((.(((....((((.......)))).(((...((....)))))....))).))))))...((((((((((((....)))).))))))))..)))))))))))))...)))))((.(((((.........(((((...((...(((((((.((.......)).))).)))).)).)))))..((((((((......(..(((((....(((((((((((........))))).))))))....)))))..).....))))))))..)))))..)))))..))))).))))))))))))))).....(((((((....((((((((.........)))))))).(((((.((((((.(((....(((((....))))).))).)))))).)))))(((((((.((((.............((((...((((..(((.......((((((...((((((((.........((((((...((((((..............(((((.((((((((((((..(((...(((.....)))...)))..))).))))))))).....)))))..............((((((((((.............)))))))))).))))))...))))))........(((((.((((.........)))).))))).....................))))))))...))))))....))).))))..)))).....((..((((......(((((..((((((......))))))....)))))......))))..))...........)))).)))))))...)))))))))))))))).....))))))))))).................((((((((...(((....(((..((.....((((....))))....))..)))......((((((((.....)))))))).)))..))))))))......)))))... (-265.93) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 320 128 87 198 157 NC_003454:FN0273|5end_Butyrate-acetoacetate_CoA-transferase_subunit_B_899423..899653_POSITIVE 312 605 565 85 48 NC_003454:FN0981|5end_phosphoribosylamine--glycine_ligase_1634120..1634350_NEGATIVE 293 638 592 91 45 NC_003454:FN1852|5end_hypothetical_protein_341616..341846_POSITIVE 283 717 681 92 44 NC_003454:FN0176|5end_Cell_division_inhibitor_MinD_801157..801387_POSITIVE 271 766 727 216 178 NC_003454:FN2122|5end_Phenylalanyl-tRNA_synthetase_beta_chain_632194..632424_NEGATIVE 268 749 705 212 165 NC_003454:FN1584|5end_Beta-lactamase_96158..96388_NEGATIVE 263 800 752 73 10 NC_003454:FN0221|5end_Carbon_starvation_protein_A_845209..845439_POSITIVE 263 590 545 64 16 NC_003454:FN0216|5end_3-oxoacyl-[acyl-carrier_protein]_reductase_840864..841094_NEGATIVE 261 600 551 158 116 NC_003454:FN0202|5end_Glutaconate_CoA-transferase_subunit_A_827780..828010_POSITIVE 257 748 703 167 120 NC_003454:FN1591|5end_RNFB-related_protein_103135..103365_NEGATIVE 254 1097 1056 194 150 NC_003454:FN1873|5end_Bis(5'-nucleosyl)-tetraphosphatase_363440..363670_NEGATIVE 249 1001 976 195 173 NC_003454:FN1487|5end_hypothetical_protein_2170020..2170250_NEGATIVE 248 1000 957 48 5 NC_003454:FN1253|5end_hypothetical_protein_1910405..1910635_NEGATIVE 247 759 716 56 8 NC_003454:FN0934|5end_chorismate_synthase_1586440..1586670_POSITIVE 247 284 244 152 108 NC_003454:FN0774|5end_Hypothetical_cytosolic_protein_1429692..1429922_POSITIVE 246 1007 970 54 8 NC_003454:FN0859|5end_hypothetical_protein_1521229..1521459_NEGATIVE 242 533 507 103 77 NC_003454:FN0915|5end_PTS_system,_N-acetylglucosamine-specific_IIA_component_1572037..1572267_NEGATIVE 241 787 744 187 147 NC_003454:FN1126|5end_Acetyltransferase_1770287..1770517_NEGATIVE 240 147 111 206 167 NC_003454:FN1895|5end_hypothetical_protein_382871..383101_NEGATIVE 240 606 567 83 44 NC_003454:FN1703|5end_ADP-L-glycero-D-manno-heptose-6-epimerase_198992..199222_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 312 605 565 68 31 NC_003454:FN0982|3end_bifunctional_phosphoribosylaminoimidazolecarboxamide_formyltransferase/IMP_cyclohydrolase_1634137..1634287_NEGATIVE 283 717 681 90 42 NC_003454:FN0175|3end_Cell_division_inhibitor_MinC_801235..801385_POSITIVE 273 1110 1071 63 20 NC_003454:FN1546|3end_translation_elongation_factor_EF-G_59529..59679_NEGATIVE 261 600 551 47 5 NC_003454:FN0201|3end_Glutaconyl-COA_decarboxylase_beta_subunit_827749..827899_POSITIVE 257 724 688 56 27 NC_003454:FN1905|3end_168_kDa_surface-layer_protein_precursor_393653..393803_NEGATIVE 257 748 703 140 93 NC_003454:FN1592|3end_Na(+)-translocating_NADH-quinone_reductase_subunit_D_103162..103312_NEGATIVE 255 410 369 75 32 NC_003454:FN1559|3end_cell_volume_regulation_protein_CvrA_82490..82640_POSITIVE 250 739 697 53 17 NC_003454:FN0587|3end_Hypothetical_membrane-spanning_protein_1241963..1242113_NEGATIVE 247 759 716 72 24 NC_003454:FN0933|3end_3-phosphoshikimate_1-carboxyvinyltransferase_1586536..1586686_POSITIVE 242 533 507 75 49 NC_003454:FN0916|3end_hypothetical_protein_1572065..1572215_NEGATIVE 238 710 663 120 66 NC_003454:FN1621|3end_elongation_factor_Ts_129655..129805_POSITIVE 237 287 241 69 17 NC_003454:FN1336|3end_hypothetical_protein_1989936..1990086_NEGATIVE 235 1149 1102 134 94 NC_003454:FN0997|3end_hypothetical_protein_1651384..1651534_NEGATIVE 232 995 969 31 2 NC_003454:FN1191|3end_hypothetical_protein_1854729..1854879_POSITIVE 232 289 247 51 12 NC_003454:FN1659|3end_hypothetical_protein_155826..155976_POSITIVE 231 820 776 65 24 NC_003454:FN1528|3end_hypothetical_protein_42588..42738_NEGATIVE 230 996 963 122 90 NC_003454:FN1183|3end_Hypothetical_cytosolic_protein_1845428..1845578_NEGATIVE 228 687 657 53 17 NC_003454:FN0183|3end_Glycerol-3-phosphate_dehydrogenase_807078..807228_NEGATIVE 226 989 952 60 28 NC_003454:FN0241|3end_Dihydrofolate_reductase_865295..865445_POSITIVE 225 272 232 80 44 NC_003454:FN0048|3end_4-nitrophenylphosphatase_685285..685435_NEGATIVE