Origin IGS: gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatcttgtaatcactgtattgccattcatcttagctttaccttttcgtttaatatattcctcaatatcaaatacattcctcttatcatagtcttcaaggagcttataattcttatgttttgtaatatcgaatttgtctgatagaaaaggtcttacgcctctaagctgaaagatacatttaccaccatccataactgttatctcatcttgactcataagttctttacctgtcttttgataatttaagccgaaactcttttgattactccttgtttccgatgtgttgtaaaggtcaatagtttctttaccaagtgtttcggaaagctcttttagtgtagttttctcctttccacctaaaaatagggtactatcacagttaccaacaattgtatcggcattatccttgtagattgcctttagctgagattgtgcctgaagtatgatacttgttgaaatttctctggaacagatcgttgcaatgagcttcatcggtatccgagataataacaaagagtgccgtttttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaggactatgttcaaattcattatactcagatataagtcttgaaagaggatgaacttgagcttgatactcttggagatagaaaaacggcactctttgttattatctcggataccgatgaagctcattgcaacgatctgttccagagaaatttcaacaagtatcatacttcaggcacaatctcagctaaaggcaatctacaaggataatgccgatacaattgttggtaactgtgatagtaccctatttttaggtggaaaggagaaaactacactaaaagagctttccgaaacacttggtaaagaaactattgacctttacaacacatcggaaacaaggagtaatcaaaagagtttcggcttaaattatcaaaagacaggtaaagaacttatgagtcaagatgagataacagttatggatggtggtaaatgtatctttcagcttagaggcgtaagaccttttctatcagacaaattcgatattacaaaacataagaattataagctccttgaagactatgataagaggaatgtatttgatattgaggaatatattaaacgaaaaggtaaagctaagatgaatggcaatacagtgattacaagattgtaatattttctgttatagctatacaggagagggtctatttggtataataaagtttgataaatcaggatttgtaggagaaacgcaagatatgcaactgtgatataatgttcggtgtgcaaaagtgtgaattttattaaaaaaaggagagtattc Mask Tandem Repeat Region ================================================ gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatcttgtaatcactgtattgccattcatcttagctttaccttttcgtttaatatattcctcaatatcaaatacattcctcttatcatagtcttcaaggagcttataattcttatgttttgtaatatcgaatttgtctgatagaaaaggtcttacgcctctaagctgaaagatacatttaccaccatccataactgttatctcatcttgactcataagttctttacctgtcttttgataatttaagccgaaactcttttgattactccttgtttccgatgtgttgtaaaggtcaatagtttctttaccaagtgtttcggaaagctcttttagtgtagttttctcctttccacctaaaaatagggtactatcacagttaccaacaattgtatcggcattatccttgtagattgcctttagctgagattgtgcctgaagtatgatacttgttgaaatttctctggaacagatcgttgcaatgagcttcatcggtatccgagataataacaaagagtgccgtttttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Find is-nt database================================================ Query_seq: TDE2454:TDE2456|TDE2454:TDE2456:hypothetical protein:hypothetical protein:<-<-:2483467..2484225 759 gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatcttgtaatcactgtattgccattcatcttagctttaccttttcgtttaatatattcctcaatatcaaatacattcctcttatcatagtcttcaaggagcttataattcttatgttttgtaatatcgaatttgtctgatagaaaaggtcttacgcctctaagctgaaagatacatttaccaccatccataactgttatctcatcttgactcataagttctttacctgtcttttgataatttaagccgaaactcttttgattactccttgtttccgatgtgttgtaaaggtcaatagtttctttaccaagtgtttcggaaagctcttttagtgtagttttctcctttccacctaaaaatagggtactatcacagttaccaacaattgtatcggcattatccttgtagattgcctttagctgagattgtgcctgaagtatgatacttgttgaaatttctctggaacagatcgttgcaatgagcttcatcggtatccgagataataacaaagagtgccgtttttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE2454:TDE2456|TDE2454:TDE2456:hypothetical protein:hypothetical protein:<-<-:2483467..2484225 759 gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatcttgtaatcactgtattgccattcatcttagctttaccttttcgtttaatatattcctcaatatcaaatacattcctcttatcatagtcttcaaggagcttataattcttatgttttgtaatatcgaatttgtctgatagaaaaggtcttacgcctctaagctgaaagatacatttaccaccatccataactgttatctcatcttgactcataagttctttacctgtcttttgataatttaagccgaaactcttttgattactccttgtttccgatgtgttgtaaaggtcaatagtttctttaccaagtgtttcggaaagctcttttagtgtagttttctcctttccacctaaaaatagggtactatcacagttaccaacaattgtatcggcattatccttgtagattgcctttagctgagattgtgcctgaagtatgatacttgttgaaatttctctggaacagatcgttgcaatgagcttcatcggtatccgagataataacaaagagtgccgtttttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE2454:TDE2456|TDE2454:TDE2456:hypothetical protein:hypothetical protein:<-<-:2483467..2484225 759 gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatcttgtaatcactgtattgccattcatcttagctttaccttttcgtttaatatattcctcaatatcaaatacattcctcttatcatagtcttcaaggagcttataattcttatgttttgtaatatcgaatttgtctgatagaaaaggtcttacgcctctaagctgaaagatacatttaccaccatccataactgttatctcatcttgactcataagttctttacctgtcttttgataatttaagccgaaactcttttgattactccttgtttccgatgtgttgtaaaggtcaatagtttctttaccaagtgtttcggaaagctcttttagtgtagttttctcctttccacctaaaaatagggtactatcacagttaccaacaattgtatcggcattatccttgtagattgcctttagctgagattgtgcctgaagtatgatacttgttgaaatttctctggaacagatcgttgcaatgagcttcatcggtatccgagataataacaaagagtgccgtttttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 33 Min: 160 Max: 675 Len: 516 Subject: UniRef90_Q188K0 Cluster: Putative conjugal transfer protein; n=4; Clostridium difficile|Rep: Putative conjugal transfer protein - Clostridium difficile (strain 630) HSP 1 e-value: 8.0E-79 bit: 295.0 Len: 480 Query Start:160 Query End:639 Subject Strand: null Subject Start: 432 Subject End: 591 ............................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M N G N T V I T ........................................................................................................................ ............................................................................................................................................................... K L I A T I R S R E I S A S I I L Q A Q S Q L K V I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G S K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K K N V F N I E S Y M K R K G K A K L N R E T V I T ........................................................................................................................ Subject: UniRef90_Q1J4V3 Cluster: TraG/TraD family; n=1; Streptococcus pyogenes MGAS10750|Rep: TraG/TraD family - Streptococcus pyogenes serotype M4 (strain MGAS10750) HSP 1 e-value: 1.0E-74 bit: 282.0 Len: 477 Query Start:163 Query End:639 Subject Strand: null Subject Start: 440 Subject End: 598 .................................................................................................................................................................. K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M N G N T V I ........................................................................................................................ .................................................................................................................................................................. K L I A T I R S R E I S A S I I L Q A Q S Q L K A I Y K D H A D T I V G N C D S T L F L G G K E K T T V K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I Y Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K K N L F D V E E Y L T N R D K V K L K S S Y I I ........................................................................................................................ Subject: UniRef90_Q18AX5 Cluster: Putative conjugal transfer protein; n=1; Clostridium difficile 630|Rep: Putative conjugal transfer protein - Clostridium difficile (strain 630) HSP 1 e-value: 5.0E-61 bit: 236.0 Len: 444 Query Start:196 Query End:639 Subject Strand: null Subject Start: 421 Subject End: 568 ................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K ........................................................................................................................ ................................................................................................................................................................................................... K L I A T I R S R E I S A S I I L Q S Q S Q L K A I Y K D N A D T I V G N C D T T L F L G G K E K T T L K E T S E I L G K E T I D S F N T S E N R G R E V S H G L N Y Q K L G K Q L M T E D E I A V M D G G K C I L Q L R G V R P F F S D K Y D I T K H P N Y K Y L S D Y D K K N T F D M E K H L R R R ........................................................................................................................ Subject: UniRef90_Q3CC93 Cluster: TraG family protein; n=1; Alkaliphilus metalliredigenes QYMF|Rep: TraG family protein - Alkaliphilus metalliredigenes QYMF HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 462 Query Start:178 Query End:639 Subject Strand: null Subject Start: 43 Subject End: 196 ................................................................................................................................................................................. K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M N ........................................................................................................................ ................................................................................................................................................................................. K L I A T I R S R E M S A S I I L Q T Q S Q L K A I Y K D H A E T I V G N C D S M L F L G G K E K T T L K D L S E S L G K E T I D L F N N S E N R G R K R S Y G I N Y Q K V G K E L M T V D E L S V M D S G K C V L Q L R G V R P F L S N K F D I T K H E H Y K L L G D F D K K N N Y D V E R E M R T N L R F R K N ........................................................................................................................ Subject: UniRef90_Q6A4J3 Cluster: Hypothetical protein; n=1; Butyrivibrio fibrisolvens|Rep: Hypothetical protein - Butyrivibrio fibrisolvens HSP 1 e-value: 3.0E-56 bit: 221.0 Len: 444 Query Start:196 Query End:639 Subject Strand: null Subject Start: 392 Subject End: 539 ................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K ........................................................................................................................ ................................................................................................................................................................................................... K L V A T I R S R E I S A C L V L Q A K S Q L K A I Y K D N A D T I I G N M D S Q I F L G G T E K T T L K D L T E I L G K E T I D M Y T T G N T K G S Q E S Y N M N Y Q K L G K E L M S M D E L A V M D G S K C I V Q V R G V R P F L S D K Y D L T K H P N Y P L T A D Y D K K N W F D I E K Y L K Q K ........................................................................................................................ Subject: UniRef90_Q832B2 Cluster: TraG family protein; n=1; Enterococcus faecalis|Rep: TraG family protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 441 Query Start:196 Query End:636 Subject Strand: null Subject Start: 420 Subject End: 566 ................................................................................................................................................................................................... L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K ........................................................................................................................... ................................................................................................................................................................................................... L I S V I R S R E I S A H I V V Q T Q S Q L K A V Y K D H A E T I I G N C S C V L F L G G K E R S T L K E I S E T L G K E T I D L F N T S D T R G S Q R S M G V N Y Q K L G K E L M S T D E L A V M D G G K C I L Q V Q G V R P F F S D K F D I T K H P Q Y K Y L L D S S K K N A F D I A K Y L S R R ........................................................................................................................... Subject: UniRef90_Q9L900 Cluster: TrsK-like protein; n=2; Firmicutes|Rep: TrsK-like protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 339 Query Start:301 Query End:639 Subject Strand: null Subject Start: 427 Subject End: 538 ............................................................................................................................................................................................................................................................................................................ K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P ........................................................................................................................ ............................................................................................................................................................................................................................................................................................................ K L I A T I R S R E I S A S I I L Q S Q S Q L K A I Y K D A A E I I S D N C D S V L F L S G R G K N A - K E I S D A L G K E T I D S F N T S E N R G S Q T S H G L N Y Q K L G K E L M S Q D E I A V M D G G K C I L Q L R G V R P ........................................................................................................................ Subject: UniRef90_UPI000045D60E Cluster: hypothetical protein Haso02000457; n=1; Haemophilus somnus 2336|Rep: hypothetical protein Haso02000457 - Haemophilus somnus 2336 HSP 1 e-value: 2.0E-29 bit: 132.0 Len: 207 Query Start:163 Query End:369 Subject Strand: null Subject Start: 1 Subject End: 69 .................................................................................................................................................................. M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M N G N T V I ...................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................. M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K Y D I T K H K N Y K L L E D Y D K K N I F N I E D Y I K R K G K A K L N K N T S I ...................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1JB76 Cluster: TraG/TraD family; n=1; Streptococcus pyogenes MGAS2096|Rep: TraG/TraD family - Streptococcus pyogenes serotype M12 (strain MGAS2096) HSP 1 e-value: 3.0E-24 bit: 114.0 Len: 396 Query Start:244 Query End:639 Subject Strand: null Subject Start: 414 Subject End: 545 ................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D ........................................................................................................................ ................................................................................................................................................................................................................................................... K I L S V M R S R G V S V S I I L Q N L A Q L K A L F E K Q W E S I C G N C D E F L Y L G G N E Q S T H K Y V S E L L G K E T I D T N T Y G K S S G R S G N Y S T N Y Q I S G R E L L T P D E V R M L D N R Y A L L F I R G E R P V M D L K Y D I L K H P N L K L T T D ........................................................................................................................ Subject: UniRef90_A4F5I0 Cluster: Hypothetical protein; n=1; uncultured bacterium|Rep: Hypothetical protein - uncultured bacterium HSP 1 e-value: 8.0E-24 bit: 113.0 Len: 396 Query Start:244 Query End:639 Subject Strand: null Subject Start: 440 Subject End: 571 ................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D ........................................................................................................................ ................................................................................................................................................................................................................................................... K I L S V M R S R G V S V S I I L Q N L A Q L K A L F E K Q W E S I V G N C D E F L Y L G G N E Q S T H K Y V S E L L G K E T I D T N T F G K S T G R S G N Y S T N Y Q I S G R E L L T P D E V R M L D N Q Y A I L L I G G K R P V M D F K Y D I L K H P N V A L T T D ........................................................................................................................ Subject: UniRef90_Q6WRZ9 Cluster: TrsK-like protein; n=1; Enterococcus faecalis|Rep: TrsK-like protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 396 Query Start:244 Query End:639 Subject Strand: null Subject Start: 413 Subject End: 544 ................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D ........................................................................................................................ ................................................................................................................................................................................................................................................... K I L S V M R S R G V S V S I I L Q N L A Q L K A L F E K Q W E S I V G N C D E F L Y L G G N E Q S T H K Y V S E L L G K E T I D T N T Y G K S S G R S G N Y S T N Y Q I S G R E L M T P D E V R M L D N R Y A L L L C V G N A P V M D F K Y D I L K H P N V K L T A D ........................................................................................................................ Subject: UniRef90_Q8E4N7 Cluster: Hypothetical protein gbs1364; n=1; Streptococcus agalactiae serogroup III|Rep: Hypothetical protein gbs1364 - Streptococcus agalactiae serotype III HSP 1 e-value: 4.0E-21 bit: 104.0 Len: 387 Query Start:244 Query End:630 Subject Strand: null Subject Start: 437 Subject End: 567 ................................................................................................................................................................................................................................................... A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D ................................................................................................................................. ................................................................................................................................................................................................................................................... S T V R S R N M S L V P I L Q N I A Q L Q G L Y K E K E A W K T I L G N C D S L L Y L G G N D E E T F K F M S A L L G K Q T I D V R N T S R S F G Q T G S G S L S H Q K I A R D L M T P D E V G R M R R D E C L V R I A G V P V F R S K K Y L P T R H K N W K L L A E ................................................................................................................................. Subject: UniRef90_Q9EZG5 Cluster: Orf21; n=1; Streptococcus pneumoniae|Rep: Orf21 - Streptococcus pneumoniae HSP 1 e-value: 2.0E-19 bit: 98.6 Len: 393 Query Start:238 Query End:630 Subject Strand: null Subject Start: 318 Subject End: 450 ............................................................................................................................................................................................................................................. A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D ................................................................................................................................. ............................................................................................................................................................................................................................................. S T V R S R N M S L V P I L Q N I A Q L Q G L Y K E K E A W K T I L G N C D S L V Y L G G N D E D T F K F M S G L L G K Q T I D V R N T S R S F G Q T G S G S L S H Q K I A R D L M T P D E V G N M K R H E C L V R I A N M P V F K S K K Y N S T K H P N W K Y L A N Q E ................................................................................................................................. Subject: UniRef90_Q2ZXZ1 Cluster: TRAG protein; n=5; Streptococcus|Rep: TRAG protein - Streptococcus suis 89/1591 HSP 1 e-value: 3.0E-19 bit: 98.2 Len: 387 Query Start:244 Query End:630 Subject Strand: null Subject Start: 437 Subject End: 567 ................................................................................................................................................................................................................................................... A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D ................................................................................................................................. ................................................................................................................................................................................................................................................... S T V R S R N M S L V P I L Q N I A Q L Q G L Y K E K E A W K T I L G N C D S L L Y L G G N D E E T F K F M S G L L G K Q T I D V R S T S R S F G Q T G S S S T S H Q K I A R D L M T A D E V G N M K R D E C L V R I A G V P V F R T K K Y F P L K H K N W K W L A D ................................................................................................................................. Subject: UniRef90_Q0GU00 Cluster: TraG; n=1; Lactococcus lactis|Rep: TraG - Lactococcus lactis HSP 1 e-value: 4.0E-19 bit: 97.4 Len: 462 Query Start:196 Query End:657 Subject Strand: null Subject Start: 429 Subject End: 586 ................................................................................................................................................................................................... L S R I P - - M K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K - E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K - N Y K L L E D Y D K R N V F D I E E Y I K R K ...................................................................................................... ................................................................................................................................................................................................... L G K I P N I K E A L A V F R S R E M S V N I I L Q N L N Q L R A L Y K D D W Q S F V G N C D T I M Y L S G S T E P E T E K F F S E R A G K E T I D M R K Q T E N R G G Q G S Y S I N H D V L G R D L I T K D E V N R L P R D E C L I S I S S M P I Y K G K K F K F N G H K R S S E W S R S S N D E N W F D F K P V H K K K ...................................................................................................... Subject: UniRef90_A2RL04 Cluster: Conjugal transfer protein TraD; n=1; Lactococcus lactis subsp. cremoris MG1363|Rep: Conjugal transfer protein TraD - Lactococcus lactis subsp. cremoris (strain MG1363) HSP 1 e-value: 1.0E-18 bit: 95.9 Len: 444 Query Start:190 Query End:633 Subject Strand: null Subject Start: 440 Subject End: 588 ............................................................................................................................................................................................. I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H - K N Y K L L E D Y D K R N V F D I E E Y I K R K G K .............................................................................................................................. ............................................................................................................................................................................................. L A T F R K R E M S F M V I L Q S L A Q L K K M Y K N N W E E I V D N C A S L I Y L G G D D P K T L E F L S K R L G K Q T I S L R K H S I S K G G S G G G S E S R D K T G R D L M M G D E I A T I D G D E C L V F I K K E R G F L D R K Y Y A Y E H P R A D E L A R N P G D K N W F N Y R R Y M N E E E K .............................................................................................................................. Subject: UniRef90_A4E8F0 Cluster: Hypothetical protein; n=1; Collinsella aerofaciens ATCC 25986|Rep: Hypothetical protein - Collinsella aerofaciens ATCC 25986 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 471 Query Start:187 Query End:657 Subject Strand: null Subject Start: 446 Subject End: 605 .......................................................................................................................................................................................... L S R I P - - M K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N - A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G - - - - L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A ...................................................................................................... .......................................................................................................................................................................................... I G R I P D F E R T I A V T R S R N I A V S M I A Q S L S Q L K E T Y G D N N A E T I V N A C D T L L Y L G G K A N E T N E E I S K M A G K Q T V - - - - A S E T Q S D S R G A G W T R T V N R G I S E R D L I Q P A E V A R M P R E D A L V L V N G C M P L M D R K Y R L E R H P R S S L L E E A A R R G P F D F A E Y R R R K D G A ...................................................................................................... Subject: UniRef90_Q6AG10 Cluster: Conjugal plasmid transfer, ATPase; n=1; Leifsonia xyli subsp. xyli|Rep: Conjugal plasmid transfer, ATPase - Leifsonia xyli subsp. xyli HSP 1 e-value: 3.0E-16 bit: 88.2 Len: 381 Query Start:277 Query End:657 Subject Strand: null Subject Start: 486 Subject End: 614 .................................................................................................................................................................................................................................................................................... L S R I P M - - K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I ...................................................................................................... .................................................................................................................................................................................................................................................................................... I G K I P A F E Q V M A T I R S R G I S A S I I M Q S R S Q G K T L F G D A W A G V E N N C D T K L F L G G D E E Q T T K W V S Q L L G Y Q T I V T S E Y S E S R G S H G S W S K S M R V T K R E L M M P D E I G R L P D D E A I L K I R G M N P F R S K K L A V ...................................................................................................... Subject: UniRef90_Q82YL7 Cluster: TraG family protein; n=2; Enterococcus faecalis|Rep: TraG family protein - Enterococcus faecalis (Streptococcus faecalis) HSP 1 e-value: 1.0E-13 bit: 79.3 Len: 390 Query Start:268 Query End:657 Subject Strand: null Subject Start: 426 Subject End: 557 ........................................................................................................................................................................................................................................................................... L S R I P M - - K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H ...................................................................................................... ........................................................................................................................................................................................................................................................................... I G R I P H F E K M L T T F R K R E M S F T I V L Q S L N Q L Q T L Y R N G W Q N I L N G C A C L L Y L G G D E E E T T K Y L S A R A G K Q T L S I R K H S M N K G N Q G G G S E N R D K Y G R D L I D R S E V A L I G G D E C L V F I S K E H V F K D K K F Y A F Q H ...................................................................................................... Subject: UniRef90_Q8R8F9 Cluster: ATPase involved in conjugal plasmid transfer; n=1; Thermoanaerobacter tengcongensis|Rep: ATPase involved in conjugal plasmid transfer - Thermoanaerobacter tengcongensis HSP 1 e-value: 4.0E-11 bit: 70.9 Len: 372 Query Start:268 Query End:639 Subject Strand: null Subject Start: 414 Subject End: 541 ........................................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F - - - - - G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H ........................................................................................................................ ........................................................................................................................................................................................................................................................................... K K I S T M R S R G I H S S V V F Q N I S Q L K N R Y P N D A W Q E I I G N C D T R L F L G C T D V A T A Q F V S D L L G Q A T V E A R T F R K H A G L E G L F D F G D I S L N T Q K - - R P L L T P D E I L R L D H R N A I V I L R G Q K P L M V E K M D Y I K H ........................................................................................................................ Subject: UniRef90_Q97HP1 Cluster: Possible plasmid transfer factor, TraK; n=1; Clostridium acetobutylicum|Rep: Possible plasmid transfer factor, TraK - Clostridium acetobutylicum HSP 1 e-value: 8.0E-11 bit: 70.1 Len: 390 Query Start:250 Query End:639 Subject Strand: null Subject Start: 429 Subject End: 562 ......................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D - - L Y N T S E T R S N Q K S F G L N Y Q K T G K - E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L ........................................................................................................................ ......................................................................................................................................................................................................................................................... K K I S T M R S R G I S S L I I F Q N I A Q L Q N R Y P N N G W S E I I G N C D S R L F L G A T D M I T S E F V S K L L G T A T V N D R S F S K S A G F K G I M D F G K I T D K S I K R N L M N P D E L L R L P N E N E I L I L R G Q K P I M L Q K M D Y T K H R L S K F L ........................................................................................................................ Subject: UniRef90_Q8E5A4 Cluster: Hypothetical protein gbs1128; n=1; Streptococcus agalactiae serogroup III|Rep: Hypothetical protein gbs1128 - Streptococcus agalactiae serotype III HSP 1 e-value: 9.0E-9 bit: 63.2 Len: 372 Query Start:268 Query End:639 Subject Strand: null Subject Start: 429 Subject End: 553 ........................................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H ........................................................................................................................ ........................................................................................................................................................................................................................................................................... E V L A S I R S R E M S I K I I I Q A I S Q L D S L Y G V P A R K S M V N N C A T L L F L G T N D E D T M K Y F S M R A G K Q T I I Q T S Y S E Q R G H R I S G T T S R Q A H Q R D L M T P D E I A R I G V D E A L V F I S K Q N V F R D K K A M V S N H ........................................................................................................................ Subject: UniRef90_Q2ZJN4 Cluster: ATPase involved in conjugal plasmid transfer; n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep: ATPase involved in conjugal plasmid transfer - Caldicellulosiruptor saccharolyticus DSM 8903 HSP 1 e-value: 2.0E-8 bit: 62.0 Len: 393 Query Start:247 Query End:639 Subject Strand: null Subject Start: 423 Subject End: 557 ...................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N - - Y Q K T G K E - L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E ........................................................................................................................ ...................................................................................................................................................................................................................................................... K K I S T I R K R N L H C Q I V I Q S I P Q I E D R Y P G G Q W K E I I G N C D T F L C L G V N D P D T A R Y V S E L L G I K S I Q T R S T S H P G D F N A I F E T E R I T Q S V G K R L L L N P D E V K K F D A K K N I V I L R G K N P F I T E K I F F D E M K Q A K E L E ........................................................................................................................ Subject: UniRef90_O87219 Cluster: TrsK protein; n=1; Lactococcus lactis|Rep: TrsK protein - Lactococcus lactis HSP 1 e-value: 5.0E-8 bit: 60.8 Len: 459 Query Start:181 Query End:639 Subject Strand: null Subject Start: 300 Subject End: 452 .................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y - K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K - - - - S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M ........................................................................................................................ .................................................................................................................................................................................... E F L A T C R G Y G I G V T T I C Q T L T Q L Q S L Y G K E K A E S I L G N H A V K I C L N A S N E A T A K Y F S E L L G K S T V K V E T G S E S T S H S K E T S T S K S D S Y S Y T S R Q L M T P D E I I R M P D T Q S L L I F T N Q K P I K A - - - - - T K A F Q F K L F P D A D S K V K L E Q N K Y V G I T S K S Q L ........................................................................................................................ Subject: UniRef90_Q2ZET7 Cluster: ATPase involved in conjugal plasmid transfer; n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep: ATPase involved in conjugal plasmid transfer - Caldicellulosiruptor saccharolyticus DSM 8903 HSP 1 e-value: 2.0E-7 bit: 58.5 Len: 393 Query Start:247 Query End:639 Subject Strand: null Subject Start: 426 Subject End: 560 ...................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N - - Y Q K T G K E - L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E ........................................................................................................................ ...................................................................................................................................................................................................................................................... K K I S T I R K R N L H C Q I V I Q S I P Q L E D R Y P G G Q W K E I I G N C D T F L C L G V N D P D T A E Y V S T L L G I K S I Q T R S T S H P G D F N A I F E T E R I T Q S V G K R L L L N P D E V K K F D A D K N I V L L R G K N P L I T E K V F F D R M K Q A K E L E ........................................................................................................................ Subject: UniRef90_Q2XV30 Cluster: TraK-like protein; n=4; Staphylococcus aureus|Rep: TraK-like protein - Staphylococcus aureus HSP 1 e-value: 2.0E-7 bit: 58.5 Len: 456 Query Start:178 Query End:633 Subject Strand: null Subject Start: 310 Subject End: 462 ................................................................................................................................................................................. I A T I C S R E I S T S I I L Q A Q S Q L K A I Y - K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N - - - - - Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K A K M N .............................................................................................................................. ................................................................................................................................................................................. L A T C R K Y G I S I T T I V Q S I S Q A V D K Y N K D K A N A I I G N H A V I L C L G N V N N D T A K Y I K E E L G N A T V E F E T S S E G S S S G K D S R S K S S N K N V S Y T G R A L L N E D E I S N M Q Q D K A I L I T K N R N P K I - - - - - I K K L A Y F K M F P N L T E T Y I A P Q N E Y K R K K N Q S M I D .............................................................................................................................. Subject: UniRef90_Q3EZQ1 Cluster: ATPASE VIRD4 HOMOLOG; n=1; Bacillus thuringiensis serovar israelensis ATCC 35646|Rep: ATPASE VIRD4 HOMOLOG - Bacillus thuringiensis serovar israelensis ATCC 35646 HSP 1 e-value: 7.0E-7 bit: 57.0 Len: 282 Query Start:361 Query End:642 Subject Strand: null Subject Start: 475 Subject End: 562 ........................................................................................................................................................................................................................................................................................................................................................................ M K L I A T I C - S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T G K E L M S Q ..................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................ M A N I I T V C L G R N V R F N L V I Q A Y A Q L K N K Y G E D A D T I D G N C G N T I Y I L T N D Q E T A E K V S K K L G N Q T I N L - - - - - - - S S R S G K G L S T D K N K T E S L D Q ..................................................................................................................... Subject: UniRef90_Q2RLJ0 Cluster: TRAG protein; n=1; Moorella thermoacetica ATCC 39073|Rep: TRAG protein - Moorella thermoacetica (strain ATCC 39073) HSP 1 e-value: 1.0E-6 bit: 55.8 Len: 315 Query Start:325 Query End:639 Subject Strand: null Subject Start: 454 Subject End: 563 .................................................................................................................................................................................................................................................................................................................................... K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R - - - - - - - - - - - S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I ........................................................................................................................ .................................................................................................................................................................................................................................................................................................................................... K K I A T V R S R G L D C H V I V Q S I P Q L E R K Y G R T W E E I M A C C D T K L I I G V K D D T T A R Y V S R M L G E S T V E - - T R S S T R E V N P I W G Q G L F D D K R S L G I - - - - T G R E L M T P D E I Q K M R S K F C L ........................................................................................................................ Subject: UniRef90_Q6LWF1 Cluster: Conjugation protein; n=2; Lactobacillus|Rep: Conjugation protein - Lactobacillus plantarum WCFS1 HSP 1 e-value: 1.0E-6 bit: 55.8 Len: 354 Query Start:286 Query End:639 Subject Strand: null Subject Start: 300 Subject End: 422 ............................................................................................................................................................................................................................................................................................. K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y - K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K - - - - S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K ........................................................................................................................ ............................................................................................................................................................................................................................................................................................. E F L A T C R G Y G I G V T T I C Q T L T Q L Q A L Y G K D K A E S I L G N H A V K I C L N A A N D V T A K Y F S D L L G K S T V K V E T G S E S T S H S K E E S H S K S D S Y S Y T S R S L M T P D E I M R M P E D Q S L L I F S N A R P V K A T K ........................................................................................................................ Subject: UniRef90_Q93M96 Cluster: Hypothetical protein PCP51; n=1; Clostridium perfringens|Rep: Hypothetical protein PCP51 - Clostridium perfringens HSP 1 e-value: 2.0E-6 bit: 55.5 Len: 453 Query Start:190 Query End:642 Subject Strand: null Subject Start: 612 Subject End: 770 ............................................................................................................................................................................................. M K L I A T I C - S R E I S T S I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N Y Q K T - - - - G K E L M S Q D E I T V M D G G K C I F Q L R G V R - - - - - - - - - - - - P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y I K R K G K ..................................................................................................................... ............................................................................................................................................................................................. M G T L T T V C L G R R I R F N M I I Q A Y S Q L K K L Y G E D E K T I V G N C G N V I Y I L T N D N D T A E E I S K S L G D K T I - - - - V N Q S R S G E - I L D I T K N R T E S V D S R R L L L P E E L K K F K E G E T V V - L R V I K R Q D L K R S K I V P N P I Y N H G E T A F K Y R Y E Y L S E D F N N E N V F - - - K N I K I K S K ..................................................................................................................... Subject: UniRef90_Q1IH60 Cluster: CDS5; n=1; Mycoplasma agalactiae|Rep: CDS5 - Mycoplasma agalactiae HSP 1 e-value: 4.0E-6 bit: 54.3 Len: 324 Query Start:295 Query End:618 Subject Strand: null Subject Start: 476 Subject End: 589 ...................................................................................................................................................................................................................................................................................................... S R E I S T S I I L Q A Q S Q L K A I Y K D N A D - - - - T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S - - - E T R S N Q K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L ............................................................................................................................................. ...................................................................................................................................................................................................................................................................................................... S R N I F F Q F V L Q D Y N Q L K K - Y N D K V D G V D K T I R S N L Q F T Y F L N S N D E D T L K E L S E S L G K K E V K K I S K S T S Y D S R S K G S T S G T T E N I E E K P L M S V S E I K S K N K D L A I I S I I G Y K P M L ............................................................................................................................................. Subject: UniRef90_Q0MKI7 Cluster: Component of type IV secretion system; n=1; Sinorhizobium medicae WSM419|Rep: Component of type IV secretion system - Sinorhizobium medicae WSM419 HSP 1 e-value: 6.0E-6 bit: 53.9 Len: 465 Query Start:211 Query End:675 Subject Strand: null Subject Start: 394 Subject End: 546 .................................................................................................................................................................................................................. K R H S L L L S R I P M K L I A T I C S R E I S T S I I L Q A Q S Q L K A I Y K D N A - D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q K S F G L N - - - - - Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E .................................................................................... .................................................................................................................................................................................................................. K R M D E I M T K L P Y - - - - - V A G Y N I K L A F I I Q D L K N L D E I Y G E T S R H S L L G N C G Y Q L V L G A N D Q A T A E Y V S R A L G K R T I R Y Q S E S R T - - - I E L M G L P R R T K V E Q I R E R D L M M P Q E V R Q M P E N K M I L L I E G Q R P I F G E K L R F F Q T Q P F K S A E A F S Q A N I P Q V P E .................................................................................... Subject: UniRef90_Q6X3G3 Cluster: TraG; n=1; Pseudomonas aeruginosa|Rep: TraG - Pseudomonas aeruginosa HSP 1 e-value: 9.0E-6 bit: 53.1 Len: 390 Query Start:208 Query End:597 Subject Strand: null Subject Start: 706 Subject End: 838 ............................................................................................................................................................................................................... I I L Q A Q S Q L K A I Y K D N A D T I V G N C D S T L F L G G K E K T T L K E L S E T L G K E T I D L Y N T S E T R S N Q - - - - - - - - - - - - - - K S F G L N Y Q K T G K E L M S Q D E I T V M D G G K C I F Q L R G V R P F L S D K F D I T K H K N Y K L L E D Y D K R N V F D I E E Y .................................................................................................................................................................. ............................................................................................................................................................................................................... V F I Q D L S Q L K G T Y P K W Q T F L A N S A K S - - F F G T D D Y D T A K Y I S D S L G K A T I E - F E T E N T G K N S G S G L S G G G G S M N R G K S T G T S Q Q F T G R E L L T P D E V M R L G P E H P I V L V R G E R P Y L L D R L - - - - - - N Y - - L A D A E Y A G L F D A N P Y .................................................................................................................................................................. gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 25 End: 132 ........................ M H T F A H R T L Y H S C I S C V S P T N P D L S N F I I P N R P S P V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 20 End: 241 ................... M K F T L L H T E H Y I T V A Y L A F L L Q I L I Y Q T L L Y Q I D P L L Y S Y N R K Y Y N L V I T V L P F I L A L P F ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: + Start: 148 End: 291 ................................................................................................................................................... M L Q S C N H C I A I H L S F T F S F N I F L N I K Y I P L I I V F K E L I I L M F C N I E F V .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 449 End: 559 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M V S L P S V S E S S F S V V F S F P P K N R V L S Q L P T I V S A L S L ........................................................................................................................................................................................................ Protein_Len: 55 Strand: + Start: 593 End: 757 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I L V E I S L E Q I V A M S F I G I R D N N K E C R F S I S K S I K L K F I L F Q D L Y L S I M N L N I V L .. Protein_Len: 31 Strand: + Start: 667 End: 759 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P F F Y L Q E Y Q A Q V H P L S R L I S E Y N E F E H S P L Protein_Len: 55 Strand: - Start: 554 End: 718 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G Q L N G K A S I T G S T H Y K N F N R Q F L D N C H A E D T D S I I V F L A T K R D G L T D L E L E D E K M ......................................... Protein_Len: 33 Strand: - Start: 183 End: 281 ...................................................................................................................................................................................... R L K V K E N L I N R L I L Y M G R I M T K L S S I I R I N Q L M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 154 End: 708 ......................................................................................................................................................... N G V I T D A N D K Y I A K L Q S Q A Q L I I S T S I E R S C I T A I L K M P I R S L L L S H R K E I E L L I L S L N M ................................................... Protein_Len: 31 Strand: - Start: 57 End: 149 ........................................................ L Q M D Q T E G V F G S K D F K I I G F L G E G T Y S Y C F M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 106 End: 135 .........................................................................................................CTATACAGGAGAGGGTCTATTTGGTATAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 387 End: 416 ..................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAATTTAAGCCGAAACTCTTTTGAT....................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TDE2454:TDE2456|TDE2454:TDE2456:hypothetical protein:hypothetical protein:<-<-:2483467..2484225 759 gaatactctcctttttttaataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Intra-Species Hit: Count: 1 Min: 19 Max: 759 Len: 741 Subject: NC_002967_TDE2454_TDE2456|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2483467,2484225]|759 HSP 1 e-value: 7.0E-74 bit: 280.0 Len: 141 Query Start:19 Query End:159 Subject Strand: POSITIVE Subject Start: 19 Subject End: 159 ..................aataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ..................aataaaattcacacttttgcacaccgaacattatatcacagttgcatatcttgcgtttctcctacaaatcctgatttatcaaactttattataccaaatagaccctctcctgtatagctataacagaaaatattacaatct........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-40 bit: 167.0 Len: 84 Query Start:676 Query End:759 Subject Strand: POSITIVE Subject Start: 676 Subject End: 759 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttctatctccaagagtatcaagctcaagttcatcctctttcaagacttatatctgagtataatgaatttgaacatagtccttta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAAAAUUCACACUUUUGCACACCGAACAUUAUAUCACAGUUGCAUAUCUUGCGUUUCUCCUACAAAUCCUGAUUUAUCAAACUUUAUUAUACCAAAUAGACCCUCUCCUGUAUAGCUAUAACAGAAAAUAUUACAAUCUUGUAAUCACUGUAUUGCCAUUCAUCUUAGCUUUACCUUUUCGUUUAAUAUAUUCCUCAAUAUCAAAUACAUUCCUCUUAUCAUAGUCUUCAAGGAGCUUAUAAUUCUUAUGUUUUGUAAUAUCGAAUUUGUCUGAUAGAAAAGGUCUUACGCCUCUAAGCUGAAAGAUACAUUUACCACCAUCCAUAACUGUUAUCUCAUCUUGACUCAUAAGUUCUUUACCUGUCUUUUGAUAAUUUAAGCCGAAACUCUUUUGAUUACUCCUUGUUUCCGAUGUGUUGUAAAGGUCAAUAGUUUCUUUACCAAGUGUUUCGGAAAGCUCUUUUAGUGUAGUUUUCUCCUUUCCACCUAAAAAUAGGGUACUAUCACAGUUACCAACAAUUGUAUCGGCAUUAUCCUUGUAGAUUGCCUUUAGCUGAGAUUGUGCCUGAAGUAUGAUACUUGUUGAAAUUUCUCUGGAACAGAUCGUUGCAAUGAGCUUCAUCGGUAUCCGAGAUAAUAACAAAGAGUGCCGUUUUUCUAUCUCCAAGAGUAUCAAGCUCAAGUUCAUCCUCUUUCAAGACUUAUAUCUGAGUAUAAUGAAUUUGAACAUAGUCCUUUA ............(((((((......((((.((((...((((..(((.....)))..............................((((((......)))))).......))))...(..(((((((.....((((((....))))))...((((((....((((.(((((....(((((((((((..(((.((((........((((.((((.....((((...((.(((....))))).)))).....)))))))).......)))).)))..))).)))))))).........))))).)))).)))))).................)))))))..)..........))))))))..............((((....((((.(..(((((((..((((...((((..(((((((.(((((((.((((....(((((((((.((((((((..(((((((((.......).))))))))..................((((((.(((.((((((...((....))...((((..(((......)))))))..)))))).))).)))))).......)))))))).))))........))))).)))).)))))))......)))))).)..)))).))))...)))))))..)))))...))))..))))))).....(.((((((((((.....((((.((......))))))....)))))))))).)........... (-134.58) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGGACUAUGUUCAAAUUCAUUAUACUCAGAUAUAAGUCUUGAAAGAGGAUGAACUUGAGCUUGAUACUCUUGGAGAUAGAAAAACGGCACUCUUUGUUAUUAUCUCGGAUACCGAUGAAGCUCAUUGCAACGAUCUGUUCCAGAGAAAUUUCAACAAGUAUCAUACUUCAGGCACAAUCUCAGCUAAAGGCAAUCUACAAGGAUAAUGCCGAUACAAUUGUUGGUAACUGUGAUAGUACCCUAUUUUUAGGUGGAAAGGAGAAAACUACACUAAAAGAGCUUUCCGAAACACUUGGUAAAGAAACUAUUGACCUUUACAACACAUCGGAAACAAGGAGUAAUCAAAAGAGUUUCGGCUUAAAUUAUCAAAAGACAGGUAAAGAACUUAUGAGUCAAGAUGAGAUAACAGUUAUGGAUGGUGGUAAAUGUAUCUUUCAGCUUAGAGGCGUAAGACCUUUUCUAUCAGACAAAUUCGAUAUUACAAAACAUAAGAAUUAUAAGCUCCUUGAAGACUAUGAUAAGAGGAAUGUAUUUGAUAUUGAGGAAUAUAUUAAACGAAAAGGUAAAGCUAAGAUGAAUGGCAAUACAGUGAUUACAAGAUUGUAAUAUUUUCUGUUAUAGCUAUACAGGAGAGGGUCUAUUUGGUAUAAUAAAGUUUGAUAAAUCAGGAUUUGUAGGAGAAACGCAAGAUAUGCAACUGUGAUAUAAUGUUCGGUGUGCAAAAGUGUGAAUUUUAUU ....((((...)))).(((((((....(((...((((((((((((..((((.((..((((((..(((((((....(((((.....((..(((.....)))..)).(((((((.((.((((..((.....))..).))).))))).)))).)))))....)))))))...))))))..)).)))).(((...((((((((....))))..))))((((((((..((.((((((((((((((......(((((((((((...........)))).)))))))......(((((((.(((.((((((...........))))))........(....)...((....))..))).))))))).....))))))....(((..((((.....))))..)))...........)))))))).))..))......))))))....)))..((((((....).)))))..((((((((...((((((((((.((.((((.............(((((..............))))))))).)))))))))))).....(((((.((.(((.((.....((....((.(((((.((((((..((((((....)))))).....))).))).))))).))..)).....)).))).)).)))))..))))))))..)))))))))))).)))...(....)...((((((((.(((.....))))))).)))).....)))))))..... (-166.15) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 858 60 11 169 120 NC_002967:TDE2454|5end_hypothetical_protein_2483376..2483606_NEGATIVE 341 438 397 161 122 NC_002967:TDE2176|5end_site-specific_recombinase,_putative_2206239..2206469_NEGATIVE 339 490 449 48 1 NC_002967:TDE2770|5end_flagellar_hook-length_control_protein_FliK_2824417..2824647_NEGATIVE 324 56 15 156 118 NC_002967:TDE0069|5end_conserved_hypothetical_protein_TIGR00238_76551..76781_POSITIVE 315 480 433 225 174 NC_002967:TDE2597|5end_ribulose-phosphate_3-epimerase_2632665..2632895_NEGATIVE 313 570 526 193 156 NC_002967:TDE1550|5end_diphosphate--fructose-6-phosphate_1-phosphotransferase_1592747..1592977_POSITIVE 302 627 581 81 33 NC_002967:TDE2131|5end_cobalamin_biosynthesis_protein_CbiM,_putative_2162683..2162913_NEGATIVE 301 570 526 212 161 NC_002967:TDE0883|5end_16S_rRNA_processing_protein_RimM_901685..901915_POSITIVE 298 575 536 46 5 NC_002967:TDE2128|5end_hypothetical_protein_2160189..2160419_POSITIVE 296 658 611 78 34 NC_002967:TDE2100|5end_hypothetical_protein_2125370..2125600_POSITIVE 295 427 382 197 144 NC_002967:TDE2142|5end_methyl-accepting_chemotaxis_protein_2175769..2175999_POSITIVE 292 340 298 164 114 NC_002967:TDE2596|5end_hypothetical_protein_2632039..2632269_NEGATIVE 292 78 38 71 33 NC_002967:TDE2407|5end_amidophosphoribosyltransferase_2435107..2435337_NEGATIVE 290 369 321 82 25 NC_002967:TDE2354|5end_hypothetical_protein_2390395..2390625_POSITIVE 286 560 523 59 23 NC_002967:TDE1468|5end_glycoprotease_family_protein_1517336..1517566_NEGATIVE 285 609 561 83 27 NC_002967:TDE2013|5end_hypothetical_protein_2034706..2034936_NEGATIVE 285 178 139 109 63 NC_002967:TDE0561|5end_hypothetical_protein_594245..594475_POSITIVE 283 698 651 212 163 NC_002967:TDE0343|5end_hydrolase,_alpha/beta_fold_family_385365..385595_NEGATIVE 282 303 261 61 14 NC_002967:TDE1266|5end_phosphoribosylaminoimidazole_synthetase_1301588..1301818_NEGATIVE 282 628 589 123 84 NC_002967:TDE0884|5end_tRNA_(guanine-N(1)-)-methyltransferase_902221..902451_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 341 438 397 100 61 NC_002967:TDE2177|3end_hypothetical_protein_2206300..2206450_NEGATIVE 337 563 522 100 54 NC_002967:TDE1734|3end_exodeoxyribonuclease_III_1789463..1789613_POSITIVE 324 56 15 137 99 NC_002967:TDE0068|3end_succinyl-diaminopimelate_desuccinylase_76612..76762_POSITIVE 308 249 203 124 62 NC_002967:TDE2550|3end_hypothetical_protein_2575520..2575670_NEGATIVE 290 369 321 63 6 NC_002967:TDE2353|3end_flagellar_hook-associated_protein_2390456..2390606_POSITIVE 287 196 153 58 15 NC_002967:TDE0501|3end_hypothetical_protein_554185..554335_NEGATIVE 286 560 523 62 26 NC_002967:TDE1469|3end_conserved_hypothetical_protein_TIGR00150_1517333..1517483_NEGATIVE 285 178 139 121 75 NC_002967:TDE0560|3end_hypothetical_protein_594337..594487_POSITIVE 282 628 589 126 87 NC_002967:TDE0883|3end_16S_rRNA_processing_protein_RimM_902304..902454_POSITIVE 277 429 381 130 69 NC_002967:TDE1218|3end_flagellum-specific_ATP_synthase_FliI_1251951..1252101_POSITIVE 276 570 522 139 91 NC_002967:TDE1847|3end_hypothetical_protein_1875845..1875995_POSITIVE 276 707 664 113 73 NC_002967:TDE1577|3end_lipoprotein,_putative_1625446..1625596_POSITIVE 276 628 594 32 3 NC_002967:TDE0873|3end_hypothetical_protein_896999..897149_POSITIVE 275 408 361 55 3 NC_002967:TDE1736|3end_ferredoxin,_2(4Fe-4S)_1790158..1790308_POSITIVE 272 688 650 98 60 NC_002967:TDE2729|3end_hypothetical_protein_2785756..2785906_NEGATIVE 272 570 529 47 10 NC_002967:TDE2564|3end_PemK_family_protein_2590393..2590543_POSITIVE 270 570 522 116 46 NC_002967:TDE1292|3end_TldD/PmbA_family_protein_1329314..1329464_NEGATIVE 269 679 641 46 5 NC_002967:TDE2234|3end_iron_compound_ABC_transporter,_periplasmic_iron_compound-binding_protein,_putative_2272310..2272460_NEGATIVE 268 660 615 84 50 NC_002967:TDE2343|3end_phosphatidate_cytidylyltransferase_2380383..2380533_NEGATIVE 268 637 594 129 79 NC_002967:TDE0745|3end_glycine_reductase_complex_selenoprotein_GrdA_780840..780990_POSITIVE