Origin IGS: aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcagaagcaggaatctcatattgtatacctccgcaaaccacatgaataattgtaacagttaaagtatcttcatcaactgcgtaaaagattgaataattacctacactaaagaatcttatcccacgagataaccatggttcttttggatatcctatgataccgagacggcataaaattcaagtcttgcattgcttcataaagacggttaaaaacggcatcggcattaatttttgattttaaattatttaatatgtaagaataaatactgcttaaatcttcttttgcttgatctgaaataacaacttgatatttca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaaatatcaagttgttatttcagatcaagcaaaagaagatttaagcagtatttattcttacatattaaataatttaaaatcaaaaattaatgccgatgccgtttttaaccgtctttatgaagcaatgcaagacttgaattttatgccgtctcggtatcataggatatccaaaagaaccatggttatctcgtgggataagattctttagtgtaggtaattattcaatcttttacgcagttgatgaagatactttaactgttacaattattcatgtggtttgcggaggtatacaatatgagattcctgcttctgagggtggaatcgacggattattaaatagtggaaaaattgagcgaagatgagacttttagaattcaaaagaacaaaattgttcgatggcattgaggatggactattcgataaagattttcaattaaatatagagggaaaatctgtgttatttattgtggatgacattactccacataaattaatagactgtccggtcaaacaagatgtaataaataaattgcatctggaatcagatggcatatccaatattgtgacaaaagagcagcgattacaggtttattacttaaatgaagatgatttgttgattatcttttcaatgggtgaatatcaaccaggaagatacatgcttttcctggaaggagtctttcttaaactgaacttatttccaacttaaataactcctctggattaccttgtagaactcttggaattctctgggcaaagtatttctattttccaaggggctttaactaattcaggattgaaatataaatagctaaggagtattttattatgttacatactccaactgtttttgtaaagaaatttctccgtt Mask Tandem Repeat Region ================================================ aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcagaagcaggaatctcatattgtatacctccgcaaaccacatgaataattgtaacagttaaagtatcttcatcaactgcgtaaaagattgaataattacctacactaaagaatcttatcccacgagataaccatggttcttttggatatcctatgataccgagacggcataaaattcaagtcttgcattgcttcataaagacggttaaaaacggcatcggcattaatttttgattttaaattatttaatatgtaagaataaatactgcttaaatcttcttttgcttgatctgaaataacaacttgatatttca Find is-nt database================================================ Query_seq: TDE2330:TDE2332|TDE2330:TDE2332:hypothetical protein:hypothetical protein:-><-:2366759..2367627 869 aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcagaagcaggaatctcatattgtatacctccgcaaaccacatgaataattgtaacagttaaagtatcttcatcaactgcgtaaaagattgaataattacctacactaaagaatcttatcccacgagataaccatggttcttttggatatcctatgataccgagacggcataaaattcaagtcttgcattgcttcataaagacggttaaaaacggcatcggcattaatttttgattttaaattatttaatatgtaagaataaatactgcttaaatcttcttttgcttgatctgaaataacaacttgatatttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE2330:TDE2332|TDE2330:TDE2332:hypothetical protein:hypothetical protein:-><-:2366759..2367627 869 aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcagaagcaggaatctcatattgtatacctccgcaaaccacatgaataattgtaacagttaaagtatcttcatcaactgcgtaaaagattgaataattacctacactaaagaatcttatcccacgagataaccatggttcttttggatatcctatgataccgagacggcataaaattcaagtcttgcattgcttcataaagacggttaaaaacggcatcggcattaatttttgattttaaattatttaatatgtaagaataaatactgcttaaatcttcttttgcttgatctgaaataacaacttgatatttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE2330:TDE2332|TDE2330:TDE2332:hypothetical protein:hypothetical protein:-><-:2366759..2367627 869 aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcagaagcaggaatctcatattgtatacctccgcaaaccacatgaataattgtaacagttaaagtatcttcatcaactgcgtaaaagattgaataattacctacactaaagaatcttatcccacgagataaccatggttcttttggatatcctatgataccgagacggcataaaattcaagtcttgcattgcttcataaagacggttaaaaacggcatcggcattaatttttgattttaaattatttaatatgtaagaataaatactgcttaaatcttcttttgcttgatctgaaataacaacttgatatttca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 558 Max: 864 Len: 307 Subject: UniRef90_Q0B0J9 Cluster: Hypothetical protein; n=1; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: Hypothetical protein - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) HSP 1 e-value: 2.0E-7 bit: 44.3 Len: 147 Query Start:558 Query End:704 Subject Strand: null Subject Start: 58 Subject End: 106 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y P K E P W L S R G I R F F S V G N Y S I F Y A V D E D T L T V T I I H V V C G G I Q Y E I P A S ..................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Y Q D E P W H S K G L R V L P V D S Y L V F Y I V I E E E K T V A I V R I M Y G G H N I D L Q L S ..................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 34.7 Len: 153 Query Start:712 Query End:864 Subject Strand: null Subject Start: 5 Subject End: 55 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y Q V V I S D Q A K E D L S S I Y S Y I L N N L K S K I N A D A V F N R L Y E A M Q D L N F M P S R Y ..... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y K I I Y T E E S E Q D L V N V Y R Y I A M N L L V P E T A K K Q I D R I M N A I K G L D E L P L R H ..... Subject: UniRef90_Q191R6 Cluster: Plasmid stabilization system; n=2; Desulfitobacterium hafniense|Rep: Plasmid stabilization system - Desulfitobacterium hafniense (strain DCB-2) HSP 1 e-value: 4.0E-7 bit: 41.6 Len: 123 Query Start:582 Query End:704 Subject Strand: null Subject Start: 56 Subject End: 96 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y P K E P W L S R G I R F F S V G N Y S I F Y A V D E D T L T V T I I H V V C G G ..................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y D D E P W R S Q G L R F F P V D Y Y L V F Y L P V A S A N T V K I V R I M Y G G ..................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 36.6 Len: 153 Query Start:712 Query End:864 Subject Strand: null Subject Start: 3 Subject End: 53 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y Q V V I S D Q A K E D L S S I Y S Y I L N N L K S K I N A D A V F N R L Y E A M Q D L N F M P S R Y ..... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W T V V Y S A Q A K Q D L R N I F E Y I A H S L C S P D A A K S Q T R R I M A E I H S L D E M P L R Y ..... aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttca Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 50 End: 145 ................................................. M L L S Y L Y F N P E L V K A P W K I E I L C P E N S K S S T R .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 308 End: 436 ................................................................................................................................................................................................................................................................................................................... M L D M P S D S R C N L F I T S C L T G Q S I N L C G V M S S T I N N T D F P S I F N ................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 45 Strand: + Start: 467 End: 601 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P S N N F V L L N S K S L I F A Q F F H Y L I I R R F H P Q K Q E S H I V Y L R K P H E ............................................................................................................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 673 End: 786 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P R D N H G S F G Y P M I P R R H K I Q V L H C F I K T V K N G I G I N F ................................................................................... Protein_Len: 60 Strand: - Start: 664 End: 852 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D W S I V M T R K S I R H Y R S P M F N L D Q M A E Y L R N F V A D A N I K S K L N N L I Y S Y I S S L D E K A Q D S M ................. Protein_Len: 60 Strand: - Start: 510 End: 731 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. G E S A P I E Y Q I G G C V V H I I T V T L T D E D V A Y F I S Y N G V S F F R I G R S L W P E K P Y G I I G L R C L M .......................................................................................................................................... Protein_Len: 60 Strand: - Start: 166 End: 510 ..................................................................................................................................................................... L H L K N I V D Q K V P C D I L K H P T I D D V I F L V S K G E I N L Q F D K D F L G D E I G D F L K T R K F E L L R M ....................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 86 End: 175 ..................................................................................... N F G R P F Y F Y K A W L I G L T R C P L G S S N N L N S M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 64 End: 162 ............................................................... K Y K L G S N T L A G Q F I S I S Q G S F E L L E V L Y D L P T M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 14 End: 43 .............CTTTACAAAAACAGTTGGAGTATGTAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 47 End: 76 ..............................................ATTGAAATATAAATAGCTAAGGAGTATTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -4.3 Tail_Score: -3.36452 Start: 201 End: 225 Full_Region: TAAGAAAGACTCCTT CCAGGAAAA GCATGTA TCTTCCTGG TTGATATTCACCCAT ........................................................................................................................................................................................................CCAGGAAAAGCATGTATCTTCCTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TDE2330:TDE2332|TDE2330:TDE2332:hypothetical protein:hypothetical protein:-><-:2366759..2367627 869 aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcctatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttca Intra-Species Hit: Count: 1 Min: 1 Max: 557 Len: 557 Subject: NC_002967_TDE2330_TDE2332|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[2366759,2367627]|869 HSP 1 e-value: 0.0 bit: 1104.0 Len: 557 Query Start:1 Query End:557 Subject Strand: POSITIVE Subject Start: 1 Subject End: 557 aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctc........................................................................................................................................................................................................................................................................................................................ aacggagaaatttctttacaaaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttatttaagttggaaataagttcagtttaagaaagactccttccaggaaaagcatgtatcttcctggttgatattcacccattgaaaagataatcaacaaatcatcttcatttaagtaataaacctgtaatcgctgctcttttgtcacaatattggatatgccatctgattccagatgcaatttatttattacatcttgtttgaccggacagtctattaatttatgtggagtaatgtcatccacaataaataacacagattttccctctatatttaattgaaaatctttatcgaatagtccatcctcaatgccatcgaacaattttgttcttttgaattctaaaagtctcatcttcgctcaatttttccactatttaataatccgtcgattccaccctc........................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 1 Min: 1 Max: 165 Len: 165 Subject: tfor_TF0254_TF0255|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[285745,285946]|202 HSP 1 e-value: 8.0E-74 bit: 280.0 Len: 145 Query Start:21 Query End:165 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 145 ....................aaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaatcctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttattta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ....................aaaacagttggagtatgtaacataataaaatactccttagctatttatatttcaattctgaattagttaaagccccttggaaaatagaaatactttgcccagagaattccaagagttctacaaggtaatccagaggagttattta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-11 bit: 71.9 Len: 36 Query Start:1 Query End:36 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 181 aacggagaaatttctttacaaaaacagttggagtat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aacggagaaatttctttacaaaaacagttggagtat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACGGAGAAAUUUCUUUACAAAAACAGUUGGAGUAUGUAACAUAAUAAAAUACUCCUUAGCUAUUUAUAUUUCAAUCCUGAAUUAGUUAAAGCCCCUUGGAAAAUAGAAAUACUUUGCCCAGAGAAUUCCAAGAGUUCUACAAGGUAAUCCAGAGGAGUUAUUUA ...(((((....)))))............(((((((.............))))))).((((((.......((((....)))).)))))).(((((.(((((...((....))..(((((...(((((((...)))))))....)))))))))).)).)))..... (-30.22) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUAACUCCUCUGGAUUACCUUGUAGAACUCUUGGAAUUCUCUGGGCAAAGUAUUUCUAUUUUCCAAGGGGCUUUAACUAAUUCAGGAUUGAAAUAUAAAUAGCUAAGGAGUAUUUUAUUAUGUUACAUACUCCAACUGUUUUUGUAAAGAAAUUUCUCCGUU ...........(((((((((.....((((.(((((((((.....((((.........))))..)))))))))..))))..)))))))))......(((.((((((....(((((((.............)))))))..)))))).)))................. (-29.72) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 319 156 113 55 7 NC_002967:TDE0041|5end_birA_bifunctional_protein_47497..47727_POSITIVE 274 107 64 136 87 NC_002967:TDE0284|5end_hypothetical_protein_313428..313658_NEGATIVE 272 154 112 80 42 NC_002967:TDE0405|5end_major_outer_sheath_protein_455470..455700_POSITIVE 270 131 91 90 45 NC_002967:TDE2303|5end_hypothetical_protein_2343055..2343285_POSITIVE 265 160 113 82 26 NC_002967:TDE1132|5end_chorismate_synthase_1163415..1163645_POSITIVE 262 100 54 72 20 NC_002967:TDE2354|5end_hypothetical_protein_2390395..2390625_POSITIVE 250 145 113 227 199 NC_002967:TDE2142|5end_methyl-accepting_chemotaxis_protein_2175769..2175999_POSITIVE 247 120 73 159 110 NC_002967:TDE2326|5end_cobyric_acid_synthase_CobQ,_putative_2361087..2361317_POSITIVE 246 160 117 165 117 NC_002967:TDE0054|5end_flagellar_biosynthesis_protein_62384..62614_POSITIVE 239 158 111 142 97 NC_002967:TDE2622|5end_ABC_transporter,_ATP-binding_protein_2663590..2663820_NEGATIVE 235 158 113 189 146 NC_002967:TDE0122|5end_dihydrouridine_synthase,_putative_141539..141769_NEGATIVE 232 157 116 141 97 NC_002967:TDE1251|5end_batB_protein,_putative_1285448..1285678_POSITIVE 229 160 125 214 170 NC_002967:TDE2669|5end_CDP-alcohol_phosphatidyltransferase_family_protein_2706943..2707173_NEGATIVE 229 159 113 46 7 NC_002967:TDE0048|5end_hypothetical_protein_57822..58052_NEGATIVE 227 138 91 230 190 NC_002967:TDE1403|5end_ABC_transporter,_ATP-binding_protein_1446503..1446733_NEGATIVE 226 160 111 136 92 NC_002967:TDE2428|5end_ribosomal_protein_L33_2456292..2456522_NEGATIVE 226 154 114 214 171 NC_002967:TDE2151|5end_hypothetical_protein_2188807..2189037_NEGATIVE 225 158 114 227 189 NC_002967:TDE1566|5end_hypothetical_protein_1617822..1618052_POSITIVE 225 157 119 69 26 NC_002967:TDE0237|5end_HDIG_domain_protein_271190..271420_NEGATIVE 223 60 15 106 60 NC_002967:TDE1996|5end_hypothetical_protein_2014243..2014473_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 270 131 91 90 45 NC_002967:TDE2302|3end_HD_domain_protein_2343135..2343285_POSITIVE 265 160 113 118 62 NC_002967:TDE1131|3end_hypothetical_protein_1163531..1163681_POSITIVE 262 100 54 53 1 NC_002967:TDE2353|3end_flagellar_hook-associated_protein_2390456..2390606_POSITIVE 239 158 111 148 103 NC_002967:TDE2623|3end_hypothetical_protein_2663584..2663734_NEGATIVE 239 142 113 148 121 NC_002967:TDE1403|3end_ABC_transporter,_ATP-binding_protein_1444500..1444650_NEGATIVE 238 140 91 82 27 NC_002967:TDE2144|3end_hypothetical_protein_2180451..2180601_NEGATIVE 232 157 116 144 100 NC_002967:TDE1250|3end_batA_protein,_putative_1285531..1285681_POSITIVE 231 160 113 43 5 NC_002967:TDE1430|3end_beta-1,4-galactosyltransferase,_putative_1474511..1474661_POSITIVE 227 147 117 51 5 NC_002967:TDE2490|3end_primosomal_protein_N'_2512703..2512853_NEGATIVE 222 100 59 87 38 NC_002967:TDE2639|3end_oligoendopeptidase_F_2680089..2680239_POSITIVE 220 158 122 52 10 NC_002967:TDE0952|3end_ABC_transporter,_ATP-binding_protein_976946..977096_POSITIVE 220 100 56 131 78 NC_002967:TDE0042|3end_phosphate_acetyltransferase_49763..49913_POSITIVE 217 159 114 67 20 NC_002967:TDE1746|3end_hypothetical_protein_1799474..1799624_NEGATIVE 214 160 111 128 68 NC_002967:TDE2120|3end_glycine_reductase_complex_proprotein_GrdE2_2152705..2152855_NEGATIVE 212 156 116 112 78 NC_002967:TDE0813|3end_ABC_transporter,_ATP-binding_protein/permease_835707..835857_POSITIVE 211 120 77 65 18 NC_002967:TDE2558|3end_ABC_transporter,_ATP-binding/permease_protein_2583729..2583879_NEGATIVE 211 147 119 151 117 NC_002967:TDE2228|3end_aminoacyl-histidine_dipeptidase,_putative_2267287..2267437_NEGATIVE 211 160 111 74 11 NC_002967:TDE1645|3end_polypeptide_deformylase_1695543..1695693_NEGATIVE 210 125 87 39 8 NC_002967:TDE1992|3end_OmpA_family_protein_2010902..2011052_POSITIVE 210 81 48 118 73 NC_002967:TDE1211|3end_ATP-dependent_protease_ATP-binding_subunit_1245402..1245552_POSITIVE