Origin IGS:
ttgtaaatttattggggcggagcgggaatttatgccgctttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgctaaaaattgtgtcaggcacactgctgcgtgtcaagtactttacttcacttttcgcatttttttggtgagaatgtttgtatttggtgtgtttgcagcgttttcctatcattagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
attaaagaataggttatcaaaacatcataaaaattcctttgcgctcttagcacccccctgcggttaaataaaaaaaatcttaaaaagattgaaatatctaaaagaccatgttataatgtacactaatgataggaaaacgctgcaaacacaccaaatacaaacattctcaccaaaaaaatgcgaaaagtgaagtaaagtacttgacacgcagcagtgtgcctgacacaatttttagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaagcaacaaagcggcataaattcccgctccgccccaataaatttacaa

Mask Tandem Repeat Region ================================================
ttgtaaatttattggggcggagcgggaatttatgccgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaattgtgtcaggcacactgctgcgtgtcaagtactttacttcacttttcgcatttttttggtgagaatgtttgtatttggtgtgtttgcagcgttttcctatcattagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat

Find is-nt database================================================
Query_seq: TDE2260:TDE2261|TDE2260:TDE2261:hypothetical protein:hypothetical protein:-><-:2297634..2298004 371
ttgtaaatttattggggcggagcgggaatttatgccgctttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgctaaaaattgtgtcaggcacactgctgcgtgtcaagtactttacttcacttttcgcatttttttggtgagaatgtttgtatttggtgtgtttgcagcgttttcctatcattagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TDE2260:TDE2261|TDE2260:TDE2261:hypothetical protein:hypothetical protein:-><-:2297634..2298004 371
ttgtaaatttattggggcggagcgggaatttatgccgctttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgctaaaaattgtgtcaggcacactgctgcgtgtcaagtactttacttcacttttcgcatttttttggtgagaatgtttgtatttggtgtgtttgcagcgttttcctatcattagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TDE2260:TDE2261|TDE2260:TDE2261:hypothetical protein:hypothetical protein:-><-:2297634..2298004 371
ttgtaaatttattggggcggagcgggaatttatgccgctttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgcttgttgctaaaaattgtgtcaggcacactgctgcgtgtcaagtactttacttcacttttcgcatttttttggtgagaatgtttgtatttggtgtgtttgcagcgttttcctatcattagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 4	Min: 1	Max: 246	Len: 246
Subject: UniRef90_Q73Q74 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola
HSP  1	e-value: 1.0E-21	bit: 104.0	Len: 225	Query Start:1	Query End:225	Subject Strand: null	Subject Start: 5	Subject End: 72
 H  T  K  Y  K  H  S  H  Q  K  N  A  K  S  E  V  K  Y  L  T  R  S  S  V  P  D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q ..................................................................................................................................................
 N  S  S  Y  N  H  S  H  Q  K  T  Y  K  S  E  A  K  H  L  T  R  S  S  V  P  D  T  I  F  -  -  -  -  -  -  -  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  F  R  S  A  Q  T  N  S  Q ..................................................................................................................................................

Subject: UniRef90_Q73J43 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola
HSP  1	e-value: 3.0E-19	bit: 96.3	Len: 240	Query Start:7	Query End:246	Subject Strand: null	Subject Start: 1	Subject End: 82
...... M  I  G  K  R  C  K  H  T  -  -  K  Y  K  H  S  H  Q  K  N  A  K  S  E  V  K  Y  L  T  R  S  S  V  P  D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N .............................................................................................................................
...... M  I  E  K  R  W  K  S  T  D  R  N  Y  N  H  S  H  K  K  S  A  K  S  F  A  K  G  L  D  K  A  E  T  H  L  I  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N .............................................................................................................................
HSP  2	e-value: 3.0E-10	bit: 66.2	Len: 99	Query Start:39	Query End:137	Subject Strand: null	Subject Start: 51	Subject End: 83
...................................... A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K ..........................................................................................................................................................................................................................................
...................................... A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K ..........................................................................................................................................................................................................................................
HSP  3	e-value: 9.0E-10	bit: 64.7	Len: 108	Query Start:29	Query End:136	Subject Strand: null	Subject Start: 49	Subject End: 84
............................ Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  K  R  H  K ...........................................................................................................................................................................................................................................
............................ Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  R ...........................................................................................................................................................................................................................................

Subject: UniRef90_Q9AER5 Cluster: Glycosyltransferase PglE; n=3; Neisseria meningitidis|Rep: Glycosyltransferase PglE - Neisseria meningitidis
HSP  1	e-value: 3.0E-8	bit: 59.7	Len: 201	Query Start:13	Query End:213	Subject Strand: null	Subject Start: 55	Subject End: 120
............ K  H  S  H  Q  K  N  A  K  S  E  V  K  Y  L  T  R  S  S  V  P  D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P ..............................................................................................................................................................
............ K  I  S  N  S  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  -  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  H  R  T  P ..............................................................................................................................................................
HSP  2	e-value: 7.0E-8	bit: 58.5	Len: 150	Query Start:1	Query End:150	Subject Strand: null	Subject Start: 54	Subject End: 103
 D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q .............................................................................................................................................................................................................................
 D  K  I  S  N  S  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q .............................................................................................................................................................................................................................
HSP  3	e-value: 9.0E-8	bit: 58.2	Len: 177	Query Start:1	Query End:177	Subject Strand: null	Subject Start: 51	Subject End: 110
 K  Y  L  T  R  -  S  S  V  P  D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q ..................................................................................................................................................................................................
 K  Y  I  D  K  I  S  N  S  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q ..................................................................................................................................................................................................
HSP  4	e-value: 3.0E-7	bit: 56.6	Len: 132	Query Start:7	Query End:138	Subject Strand: null	Subject Start: 72	Subject End: 115
...... S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N .........................................................................................................................................................................................................................................
...... N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N  K  Q  Q  T  T  N  N .........................................................................................................................................................................................................................................

Subject: UniRef90_A1UY26 Cluster: 6-phosphofructokinase; n=1; Burkholderia mallei SAVP1|Rep: 6-phosphofructokinase - Burkholderia mallei SAVP1
HSP  1	e-value: 1.0E-6	bit: 54.3	Len: 138	Query Start:1	Query End:138	Subject Strand: null	Subject Start: 98	Subject End: 143
 S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q .........................................................................................................................................................................................................................................
 S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  V  D  L  R .........................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-6	bit: 52.0	Len: 240	Query Start:1	Query End:240	Subject Strand: null	Subject Start: 50	Subject End: 129
 G  K  R  -  C  K  H  T  K  Y  K  H  S  H  Q  K  N  A  K  S  E  V  K  Y  L  T  R  S  S  V  P  D  T  I  F  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q ...................................................................................................................................
 G  K  R  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  -  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q ...................................................................................................................................
HSP  3	e-value: 8.0E-6	bit: 51.6	Len: 138	Query Start:1	Query End:138	Subject Strand: null	Subject Start: 91	Subject End: 136
 S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  A  T  S  N  K  Q  Q  S  G  I  N  S  R  S  A  P  I  N  L  Q .........................................................................................................................................................................................................................................
 S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q  Q  A  A  S  S  K  Q .........................................................................................................................................................................................................................................


nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Predict ORF larger than 30AA ================================================
Protein_Len: 42	Strand: +	Start: 12	End: 137
........... M  G  R  S  G  N  L  C  R  F  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C ..........................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 11	End: 202
.......... M  G  A  E  R  E  F  M  P  L  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  K  I  V  S  G  T  L  L  R  V  K  Y  F  T  S  L  F .........................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 7	End: 246
...... M  Y  W  G  G  A  G  I  Y  A  A  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  C  C  L  L  L  V  A  K  N  C  V  R  H  T  A  A  C  Q  V  L  Y  F  T .............................................................................................................................
Protein_Len: 54	Strand: +	Start: 144	End: 305
............................................................................................................................................... M  C  Q  A  H  C  C  V  S  S  T  L  L  H  F  S  H  F  F  G  E  N  V  C  I  W  C  V  C  S  V  F  L  S  L  V  Y  I  I  T  W  S  F  R  Y  F  N  L  F  K  I  F  F  I ..................................................................
Protein_Len: 31	Strand: +	Start: 277	End: 369
.................................................................................................................................................................................................................................................................................... M  S  I  F  L  R  F  F  L  F  N  R  R  G  V  L  R  A  Q  R  N  F  Y  D  V  L  I  T  Y  S  L ..
Protein_Len: 40	Strand: -	Start: 185	End: 304
........................................................................................................................................................................................ K  E  C  K  K  P  S  F  T  Q  I  Q  H  T  Q  L  T  K  R  D  N  T  Y  M  I  V  H  D  K  L  Y  K  L  R  K  L  I  K  K  M ...................................................................
Protein_Len: 42	Strand: -	Start: 33	End: 158
................................ A  A  K  N  S  T  A  Q  Q  K  N  S  T  A  Q  Q  K  N  S  T  A  Q  Q  K  N  S  T  A  Q  Q  K  N  S  T  A  L  F  Q  T  L  C  M .....................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 1	End: 246
 K  N  S  T  A  Q  Q  K  N  S  T  A  Q  Q  K  N  S  T  A  Q  Q  K  N  S  F  I  T  D  P  V  S  S  R  T  L  Y  K  V  E  S  K  A  N  K  Q  H  S  H  K  Y  K  T  H  K  C  R  K  G  I  M .............................................................................................................................

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 92	Start: 255	End: 284
..............................................................................................................................................................................................................................................................ATTGAAATATCTAAAAGACCATGTTATAAT.......................................................................................
PromScan Matrix: RpoD-17	Strand: -	Score: 82	Start: 143	End: 172
..............................................................................................................................................CTTGACACGCAGCAGTGTGCCTGACACAAT.......................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 100	HP_score: -4.0	Tail_Score: -6.23545	Start: 284	End: 294	Full_Region: TTTTAGATATTTCAA TCTT TTT AAGA TTTTTTTTATTTAAC
...........................................................................................................................................................................................................................................................................................TCTTTTTAAGA.............................................................................

Find igs database================================================
Query_seq: TDE2260:TDE2261|TDE2260:TDE2261:hypothetical protein:hypothetical protein:-><-:2297634..2298004 371
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
Intra-Species Hit: Count: 1	Min: 247	Max: 371	Len: 125
Subject: NC_002967_TDE2260_TDE2261|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[2297634,2298004]|371
HSP  1	e-value: 2.0E-50	bit: 200.0	Len: 125	Query Start:247	Query End:371	Subject Strand: POSITIVE	Subject Start: 247	Subject End: 371
......................................................................................................................................................................................................................................................tagtgtacattataacatggtcttttagatatttcaatctttttaagannnnnnnnatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat
......................................................................................................................................................................................................................................................tagtgtacattataacatggtcttttagatatttcaatctttttaagattttttttatttaaccgcaggggggtgctaagagcgcaaaggaatttttatgatgttttgataacctattctttaat

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAGUGUACAUUAUAACAUGGUCUUUUAGAUAUUUCAAUCUUUUUAAGAUUUUUUUUAUUUAACCGCAGGGGGGUGCUAAGAGCGCAAAGGAAUUUUUAUGAUGUUUUGAUAACCUAUUCUUUAAU
......(((((((((.....(((((((((((....(((((.....))))).....)))))).((....))..((((.....)))).)))))....)))))))))..................... (-17.30)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AUUAAAGAAUAGGUUAUCAAAACAUCAUAAAAAUUCCUUUGCGCUCUUAGCACCCCCCUGCGGUUAAAUAAAAAAAAUCUUAAAAAGAUUGAAAUAUCUAAAAGACCAUGUUAUAAUGUACACUA
.....((..((.(((((...((((...............(((.......))).........((((..........(((((.....))))).............)))).))))))))).))..)). (-10.40)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
527	97	56	228	189	NC_002967:TDE0438|5end_queuine_tRNA-ribosyltransferase_494811..495041_NEGATIVE
512	110	61	206	159	NC_002967:TDE0975|5end_hypothetical_protein_998921..999151_POSITIVE
455	97	57	202	164	NC_002967:TDE2435|5end_hypothetical_protein_2466462..2466692_NEGATIVE
423	110	61	201	154	NC_002967:TDE2733|5end_hypothetical_protein_2788573..2788803_POSITIVE
423	110	61	76	29	NC_002967:TDE2732|5end_hypothetical_protein_2788448..2788678_POSITIVE
412	89	41	141	93	NC_002967:TDE0944|5end_hypothetical_protein_966247..966477_POSITIVE
410	90	61	135	108	NC_002967:TDE2480|5end_heat_shock_protein_90_2505288..2505518_NEGATIVE
392	98	57	222	182	NC_002967:TDE1345|5end_DNA_primase_1383439..1383669_POSITIVE
380	102	61	47	7	NC_002967:TDE2160|5end_hypothetical_protein_2193968..2194198_NEGATIVE
368	85	57	180	153	NC_002967:TDE2264|5end_ABC_transporter,_ATP-binding/permease_protein_2302033..2302263_NEGATIVE
341	91	58	194	163	NC_002967:TDE0162|5end_hypothetical_protein_187898..188128_POSITIVE
335	89	57	32	1	NC_002967:TDE1905|5end_hypothetical_protein_1923877..1924107_NEGATIVE
323	84	55	95	69	NC_002967:TDE1980|5end_hypothetical_protein_1992061..1992291_NEGATIVE
323	84	55	171	145	NC_002967:TDE1979|5end_hypothetical_protein_1991985..1992215_NEGATIVE
316	97	57	108	71	NC_002967:TDE1060|5end_hypothetical_protein_1086519..1086749_POSITIVE
312	90	46	69	31	NC_002967:TDE2028|5end_OmpA_family_protein_2052923..2053153_POSITIVE
310	87	48	143	106	NC_002967:TDE2734|5end_hypothetical_protein_2789071..2789301_POSITIVE
302	95	57	159	121	NC_002967:TDE0597|5end_hypothetical_protein_637212..637442_NEGATIVE
300	85	57	225	198	NC_002967:TDE1061|5end_ABC_transporter,_ATP-binding/permease_protein,_HlyB_family_1086646..1086876_POSITIVE
299	94	58	75	38	NC_002967:TDE1412|5end_sodium/hydrogen_exchanger_family_protein_1453462..1453692_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
512	110	61	80	33	NC_002967:TDE0974|3end_hypothetical_protein_998875..999025_POSITIVE
412	89	41	86	38	NC_002967:TDE0943|3end_hypothetical_protein_966272..966422_POSITIVE
410	90	61	71	44	NC_002967:TDE2481|3end_hypothetical_protein_2505352..2505502_NEGATIVE
405	90	45	148	105	NC_002967:TDE2732|3end_hypothetical_protein_2788620..2788770_POSITIVE
392	98	57	53	13	NC_002967:TDE1344|3end_hypothetical_protein_1383350..1383500_POSITIVE
380	102	61	142	102	NC_002967:TDE2160|3end_hypothetical_protein_2193873..2194023_NEGATIVE
318	91	55	123	91	NC_002967:TDE2237|3end_hypothetical_protein_2276298..2276448_NEGATIVE
312	90	46	64	26	NC_002967:TDE2027|3end_hypothetical_protein_2052998..2053148_POSITIVE
310	87	48	118	81	NC_002967:TDE2733|3end_hypothetical_protein_2789126..2789276_POSITIVE
292	100	57	52	14	NC_002967:TDE1636|3end_surface_antigen,_putative_1683517..1683667_NEGATIVE
279	75	35	148	111	NC_002967:TDE1114|3end_transcriptional_regulator,_TetR_family_1148234..1148384_NEGATIVE
278	90	44	133	77	NC_002967:TDE2700|3end_citrate_carrier_protein,_CCS_family_2745768..2745918_POSITIVE
276	86	43	130	78	NC_002967:TDE1340|3end_ribosomal_5S_rRNA_E-loop_binding_protein_Ctc/L25/TL5_1377032..1377182_POSITIVE
275	97	56	68	37	NC_002967:TDE2707|3end_hypothetical_protein_2754929..2755079_POSITIVE
266	110	64	102	49	NC_002967:TDE2308|3end_hypothetical_protein_2346313..2346463_POSITIVE
266	106	61	105	52	NC_002967:TDE0847|3end_hypothetical_protein_871342..871492_POSITIVE
264	100	59	57	13	NC_002967:TDE1848|3end_hypothetical_protein_1875897..1876047_NEGATIVE
263	76	34	134	91	NC_002967:TDE1052|3end_rubredoxin_1078712..1078862_NEGATIVE
260	105	62	48	9	NC_002967:TDE1948|3end_ABC_transporter,_permease_protein_1963454..1963604_NEGATIVE
259	85	43	53	14	NC_002967:TDE1529|3end_hypothetical_protein_1575067..1575217_POSITIVE