Origin IGS: atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcctttgcaaatccaatactgccacgtgccgctaataaaatagctaaagaaccagaaacaattggagattcttctatatccctcccatctggatccacatacttaatcgaattatatagctcgaagctgcgctgcgaataccccgcataatgatacacatgcaagtttaccgtattgtatacgactcccatgcccggtaagttttcgttatctttcttcgctttatcatctatcggagctgtggttaggggaggaaagacacttttgtcagataaaagtttctttacctcgaaacattgttggttgttacccttcctcataacccttcctatcttcaaaactgctgtttaaagggccggtgcaagcaccttgcccttaagaattctgaagctttcttatagtttttattattgcacaaaatataaaaataaacaagtgtcagcacagcgcattccgcttcaatcgctgtccgagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atataaacatacttattaagaaaatgtgtacaccgaggatatttgatgaagaataattataatcataggcaacccaactatctcttttctcggacagcgattgaagcggaatgcgctgtgctgacacttgtttatttttatattttgtgcaataataaaaactataagaaagcttcagaattcttaagggcaaggtgcttgcaccggccctttaaacagcagttttgaagataggaagggttatgaggaagggtaacaaccaacaatgtttcgaggtaaagaaacttttatctgacaaaagtgtctttcctcccctaaccacagctccgatagatgataaagcgaagaaagataacgaaaacttaccgggcatgggagtcgtatacaatacggtaaacttgcatgtgtatcattatgcggggtattcgcagcgcagcttcgagctatataattcgattaagtatgtggatccagatgggagggatatagaagaatctccaattgtttctggttctttagctattttattagcggcacgtggcagtattggatttgcaaaggatagtaataaccatattgcgttatatattaaaggagagctaggacttggtgcaggtgcagatattgatgtaaaaaaaatgctttctaatgtacttggtaatgcaggtaaaatttttacagataaactgttacatagtttttttgataaaatgttaggagaatgatat Mask Tandem Repeat Region ================================================ atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcctttgcaaatccaatactgccacgtgccgctaataaaatagctaaagaaccagaaacaattggagattcttctatatccctcccatctggatccacatacttaatcgaattatatagctcgaagctgcgctgcgaataccccgcataatgatacacatgcaagtttaccgtattgtatacgactcccatgcccggtaagttttcgttatctttcttcgctttatcatctatcggagctgtggttaggggaggaaagacacttttgtcagataaaagtttctttacctcgaaacattgttggttgttacccttcctcataacccttcctatcttcaaaactgctgtttaaagggccggtgcaagcaccttgcccttaagaattctgaagctttcttatagtttttattattgcacaaaatataaaaataaacaagtgtcagcacagcgcattccgcttcaatcgctgtccgagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Find is-nt database================================================ Query_seq: TDE2013:TDE2014|TDE2013:TDE2014:hypothetical protein:ankyrin repeat protein:<-<-:2034797..2035524 728 atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcctttgcaaatccaatactgccacgtgccgctaataaaatagctaaagaaccagaaacaattggagattcttctatatccctcccatctggatccacatacttaatcgaattatatagctcgaagctgcgctgcgaataccccgcataatgatacacatgcaagtttaccgtattgtatacgactcccatgcccggtaagttttcgttatctttcttcgctttatcatctatcggagctgtggttaggggaggaaagacacttttgtcagataaaagtttctttacctcgaaacattgttggttgttacccttcctcataacccttcctatcttcaaaactgctgtttaaagggccggtgcaagcaccttgcccttaagaattctgaagctttcttatagtttttattattgcacaaaatataaaaataaacaagtgtcagcacagcgcattccgcttcaatcgctgtccgagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE2013:TDE2014|TDE2013:TDE2014:hypothetical protein:ankyrin repeat protein:<-<-:2034797..2035524 728 atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcctttgcaaatccaatactgccacgtgccgctaataaaatagctaaagaaccagaaacaattggagattcttctatatccctcccatctggatccacatacttaatcgaattatatagctcgaagctgcgctgcgaataccccgcataatgatacacatgcaagtttaccgtattgtatacgactcccatgcccggtaagttttcgttatctttcttcgctttatcatctatcggagctgtggttaggggaggaaagacacttttgtcagataaaagtttctttacctcgaaacattgttggttgttacccttcctcataacccttcctatcttcaaaactgctgtttaaagggccggtgcaagcaccttgcccttaagaattctgaagctttcttatagtttttattattgcacaaaatataaaaataaacaagtgtcagcacagcgcattccgcttcaatcgctgtccgagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE2013:TDE2014|TDE2013:TDE2014:hypothetical protein:ankyrin repeat protein:<-<-:2034797..2035524 728 atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcctttgcaaatccaatactgccacgtgccgctaataaaatagctaaagaaccagaaacaattggagattcttctatatccctcccatctggatccacatacttaatcgaattatatagctcgaagctgcgctgcgaataccccgcataatgatacacatgcaagtttaccgtattgtatacgactcccatgcccggtaagttttcgttatctttcttcgctttatcatctatcggagctgtggttaggggaggaaagacacttttgtcagataaaagtttctttacctcgaaacattgttggttgttacccttcctcataacccttcctatcttcaaaactgctgtttaaagggccggtgcaagcaccttgcccttaagaattctgaagctttcttatagtttttattattgcacaaaatataaaaataaacaagtgtcagcacagcgcattccgcttcaatcgctgtccgagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 169 Max: 638 Len: 470 Subject: UniRef90_Q73L43 Cluster: YD repeat protein; n=1; Treponema denticola|Rep: YD repeat protein - Treponema denticola HSP 1 e-value: 1.0E-14 bit: 82.8 Len: 207 Query Start:238 Query End:444 Subject Strand: null Subject Start: 1242 Subject End: 1302 ............................................................................................................................................................................................................................................. L L S D K S V F P P L T T A P I D D K A K K D N E N L P G M G V V Y N T V N L H V Y H Y A G Y S Q R S F E L Y N S I K Y V D P D G R D I E ............................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................................................. L S G D P A L N D Y I P K A P I D D E A K K H N E N L P G M G G I Y N T I N L H V Y H Y A G - - - - - - - - N N P V K Y T D P D G R E I E ............................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q73L45 Cluster: YD repeat protein; n=1; Treponema denticola|Rep: YD repeat protein - Treponema denticola HSP 1 e-value: 7.0E-13 bit: 76.6 Len: 240 Query Start:205 Query End:444 Subject Strand: null Subject Start: 885 Subject End: 968 ............................................................................................................................................................................................................ L L S D K S V F P P L T T A P I D D K A K K D N E N L P G M G V V Y N T V N L H V Y H Y A G Y S Q R S F E L Y N S I K Y V D P D G R D I - - - - - - - - - - - - E E S P I V S G S L A I ............................................................................................................................................................................................................................................................................................ ............................................................................................................................................................................................................ L S G D P A L G E Y I P Q A P V N D E A K K H N E N L P G M G G I Y N T V N L H V Y H Y A G - - - - - - - - N N P V K Y V D P N G E K I L D V S T T L V Q E N G E E D P L G K G N T T I ............................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q73ME8 Cluster: YD repeat protein; n=1; Treponema denticola|Rep: YD repeat protein - Treponema denticola HSP 1 e-value: 2.0E-12 bit: 75.5 Len: 276 Query Start:169 Query End:444 Subject Strand: null Subject Start: 883 Subject End: 964 ........................................................................................................................................................................ L L S D K S V F P P L T T A P I D D K A K K D N E N L P G M G V V Y N T V N L H V Y H Y A G Y S Q R S F E L Y N S I K Y V D P D G R D I E E S P I V S G S L A I L L A A R G S I G F A K ............................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................ L S G D P A L G E Y I P Q A P V N D E A K K H N E N L P G I G G V F N T V N L H V Y H Y A G - - - - - - - - N N P V K Y V D P T G R T T E D G A E V - - T V I I Y Y N R K D Q I A F K K ............................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q73MF0 Cluster: YD repeat protein; n=1; Treponema denticola|Rep: YD repeat protein - Treponema denticola HSP 1 e-value: 1.0E-11 bit: 72.4 Len: 198 Query Start:247 Query End:444 Subject Strand: null Subject Start: 3057 Subject End: 3114 ...................................................................................................................................................................................................................................................... L L S D K S V F P P L T T A P I D D K A K K D N E N L P G M G V V Y N T V N L H V Y H Y A G Y S Q R S F E L Y N S I K Y V D P D G R ............................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................... L S G D P A L G E Y I P Q A P V N D E A K K H N E N L P G M G G V F N V V N L H V Y H Y A G - - - - - - - - N N P V K Y T D P D G K ............................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q73ME4 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola HSP 1 e-value: 2.0E-11 bit: 71.6 Len: 114 Query Start:504 Query End:617 Subject Strand: null Subject Start: 2 Subject End: 40 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C A V L - T L V Y F Y I L C N N K N Y K K A S E F L R A R C L H R P F K Q Q F ............................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C A V L P T L A Y F Y I L C N N K N Y K K A S G F L R A R C L L R P F K Q Q F ............................................................................................................... Subject: UniRef90_Q73MD9 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 102 Query Start:504 Query End:605 Subject Strand: null Subject Start: 3 Subject End: 36 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T L V Y F Y I L C N N K N Y K K A S E F L R A R C L H R P F K Q Q F ........................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T L V Y F Y I L C N N K N Y K K A L G F L R V R C L L R P F K Q Q F ........................................................................................................................... Subject: UniRef90_Q73L40 Cluster: Hypothetical protein; n=1; Treponema denticola|Rep: Hypothetical protein - Treponema denticola HSP 1 e-value: 6.0E-8 bit: 60.5 Len: 225 Query Start:414 Query End:638 Subject Strand: null Subject Start: 61 Subject End: 121 ............................................................................................................................................................................................................................................................................................................................................................................................................................. R T A I E A E C A V L T L V Y F Y I L C N N K N Y K K A S E F L R A R C L H R P F K Q Q F * R * E G L * G R V T T N N V S R * R N F Y L T K V S F L P .......................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................. R R S F E A S - A V P I L V Y F Y I L C N N K S Y K E P S G F L R A E P L S S S F E D R - - - - - - - - - R V - - - - V G E G R N F Y L T K V S F L P .......................................................................................... atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 17 End: 313 ................ M L S K K L C N S L S V K I L P A L P S T L E S I F F T S I S A P A P S P S S P L I Y N A I W L L L S F A N P I L P R A ............................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 282 End: 485 ......................................................................................................................................................................................................................................................................................... M A R S C A A N T P H N D T H A S L P Y C I R L P C P V S F R Y L S S L Y H L S E L W L G E E R H F C Q I K V S L P R N ................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 341 End: 514 .................................................................................................................................................................................................................................................................................................................................................... M Y T T P M P G K F S L S F F A L S S I G A V V R G G K T L L S D K S F F T S K H C W L L P F L I T L P I F K T A V ...................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 463 End: 564 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L V V T L P H N P S Y L Q N C C L K G R C K H L A L K N S E A F L .................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 564 End: 710 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M V F I I A Q N I K I N K C Q H S A F R F N R C P R K E I V G L P M I I I I L H Q I S S V Y T F S .................. Protein_Len: 60 Strand: + Start: 536 End: 727 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P L R I L K L S Y S F Y Y C T K Y K N K Q V S A Q R I P L Q S L S E K R D S W V A Y D Y N Y S S S N I L G V H I F L I . Protein_Len: 60 Strand: - Start: 504 End: 686 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Q Q K F P R H L C R A R L F E S A K K Y N K N N C L I Y F Y V L T L V A C E A E I A T R S F L Y N P Q R H N Y N N K M M .......................................... Protein_Len: 60 Strand: - Start: 7 End: 504 ...... H L N V T N Y V V G M G P L N E N D K K A K D D I P A T T L P P F V S K D S L L K K V E F C Q Q N N G K R M V R G I K M ................................................................................................................................................................................................................................ atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 573 End: 602 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTATTTTTATATTTTGTGCAATAAT.............................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 84 Start: 526 End: 542 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAAGGTGCTTGCA.......................................................................................................................................................................................... atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TDE2013:TDE2014|TDE2013:TDE2014:hypothetical protein:ankyrin repeat protein:<-<-:2034797..2035524 728 atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Intra-Species Hit: Count: 1 Min: 1 Max: 728 Len: 728 Subject: NC_002967_TDE2013_TDE2014|hypothetical protein:ankyrin repeat protein|NEGATIVE:NEGATIVE|[2034797,2035524]|728 HSP 1 e-value: 4.0E-63 bit: 244.0 Len: 168 Query Start:1 Query End:168 Subject Strand: POSITIVE Subject Start: 1 Subject End: 168 atatcattctcctaacattttatcnnnnnnnctatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcannnnnnnnacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ atatcattctcctaacattttatcaaaaaaactatgtaacagtttatctgtaaaaattttacctgcattaccaagtacattagaaagcattttttttacatcaatatctgcacctgcaccaagtcctagctctcctttaatatataacgcaatatggttattactatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-43 bit: 178.0 Len: 90 Query Start:639 Query End:728 Subject Strand: POSITIVE Subject Start: 639 Subject End: 728 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................agaaaagagatagttgggttgcctatgattataattattcttcatcaaatatcctcggtgtacacattttcttaataagtatgtttatat Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAUCAUUCUCCUAACAUUUUAUCAAAAAAACUAUGUAACAGUUUAUCUGUAAAAAUUUUACCUGCAUUACCAAGUACAUUAGAAAGCAUUUUUUUUACAUCAAUAUCUGCACCUGCACCAAGUCCUAGCUCUCCUUUAAUAUAUAACGCAAUAUGGUUAUUACUAUCCUUUGCAAAUCCAAUACUGCCACGUGCCGCUAAUAAAAUAGCUAAAGAACCAGAAACAAUUGGAGAUUCUUCUAUAUCCCUCCCAUCUGGAUCCACAUACUUAAUCGAAUUAUAUAGCUCGAAGCUGCGCUGCGAAUACCCCGCAUAAUGAUACACAUGCAAGUUUACCGUAUUGUAUACGACUCCCAUGCCCGGUAAGUUUUCGUUAUCUUUCUUCGCUUUAUCAUCUAUCGGAGCUGUGGUUAGGGGAGGAAAGACACUUUUGUCAGAUAAAAGUUUCUUUACCUCGAAACAUUGUUGGUUGUUACCCUUCCUCAUAACCCUUCCUAUCUUCAAAACUGCUGUUUAAAGGGCCGGUGCAAGCACCUUGCCCUUAAGAAUUCUGAAGCUUUCUUAUAGUUUUUAUUAUUGCACAAAAUAUAAAAAUAAACAAGUGUCAGCACAGCGCAUUCCGCUUCAAUCGCUGUCCGAGAAAAGAGAUAGUUGGGUUGCCUAUGAUUAUAAUUAUUCUUCAUCAAAUAUCCUCGGUGUACACAUUUUCUUAAUAAGUAUGUUUAUAU .............((((((((((...(((((..((((.((((.....)))).....(((((..(((........)))...))))).))))..)))))...........((((((.(((......(((((((.((((((..........((((.(((((....)))))...))))................((..(.((.........(((((..((.(((((.......((.(((........))))).....))))).))......(......).......))))).((((((((((((((.......)))....((((((..(((.((..((((((....((((.........)))).))))))..)).)))...........((((((...(((...((((..((((..(((((((((((((.((((((((...)))))))).))))).))))...........(((....)))...........))))..))))))))..............((((((.((((....))))..)))))).)))....)))))).........((((((((.(((......)))))))))))......))))))....))))))....)))))....)).)..))...)))).)).))))))).)))..((((.............))))...........))))))............))))).)))))..... (-143.42) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAUAAACAUACUUAUUAAGAAAAUGUGUACACCGAGGAUAUUUGAUGAAGAAUAAUUAUAAUCAUAGGCAACCCAACUAUCUCUUUUCUCGGACAGCGAUUGAAGCGGAAUGCGCUGUGCUGACACUUGUUUAUUUUUAUAUUUUGUGCAAUAAUAAAAACUAUAAGAAAGCUUCAGAAUUCUUAAGGGCAAGGUGCUUGCACCGGCCCUUUAAACAGCAGUUUUGAAGAUAGGAAGGGUUAUGAGGAAGGGUAACAACCAACAAUGUUUCGAGGUAAAGAAACUUUUAUCUGACAAAAGUGUCUUUCCUCCCCUAACCACAGCUCCGAUAGAUGAUAAAGCGAAGAAAGAUAACGAAAACUUACCGGGCAUGGGAGUCGUAUACAAUACGGUAAACUUGCAUGUGUAUCAUUAUGCGGGGUAUUCGCAGCGCAGCUUCGAGCUAUAUAAUUCGAUUAAGUAUGUGGAUCCAGAUGGGAGGGAUAUAGAAGAAUCUCCAAUUGUUUCUGGUUCUUUAGCUAUUUUAUUAGCGGCACGUGGCAGUAUUGGAUUUGCAAAGGAUAGUAAUAACCAUAUUGCGUUAUAUAUUAAAGGAGAGCUAGGACUUGGUGCAGGUGCAGAUAUUGAUGUAAAAAAAAUGCUUUCUAAUGUACUUGGUAAUGCAGGUAAAAUUUUUACAGAUAAACUGUUACAUAGUUUUUUUGAUAAAAUGUUAGGAGAAUGAUAU .....(((((..((((((((((((((((((.((..((..((((((.((((((....(((((.(((((.(((.((....(((((((((..(((((......(((((((....(((((((((......((((....((((((((((((((......))))))..))))))))..((((((((((((.((((((..((((....)))).)))))).....)).)))))))))).))))...(((((.(.((...(((....)))...........((((.(((((.((((((.......)))))).)))))))))))))))))...((((((...(((((((................((.........)).(((((.(((((((((...)))))....)))).))))).)))))))...))))))...)))))))))))))))).(((((((...........))))))).))).))..))))))))).........(.((((....((((((((((((.((((......))))........(((((((.((..((((........))))...))))))))).............)))))))))))).)))).)..)))))...)).))))))))..................((((((......))))))...))))))))))))..)))))))))).)))))))))))).)))))............. (-186.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 860 450 401 184 135 NC_002967:TDE2024|5end_hypothetical_protein_2051021..2051251_NEGATIVE 859 140 91 231 182 NC_002967:TDE2013|5end_hypothetical_protein_2034706..2034936_NEGATIVE 731 580 533 48 1 NC_002967:TDE1564|5end_hypothetical_protein_1616502..1616732_POSITIVE 682 659 618 64 26 NC_002967:TDE2025|5end_hypothetical_protein_2051440..2051670_NEGATIVE 636 580 531 60 11 NC_002967:TDE1569|5end_hypothetical_protein_1619785..1620015_POSITIVE 613 659 618 64 23 NC_002967:TDE1560|5end_YD_repeat_protein_1611450..1611680_POSITIVE 600 510 462 193 141 NC_002967:TDE1982|5end_hypothetical_protein_1992984..1993214_NEGATIVE 598 659 613 67 19 NC_002967:TDE2020|5end_YD_repeat_protein_2044156..2044386_NEGATIVE 525 456 411 180 136 NC_002967:TDE2097|5end_hypothetical_protein_2124741..2124971_NEGATIVE 460 500 451 189 141 NC_002967:TDE2735|5end_surface_antigen,_putative_2790154..2790384_POSITIVE 377 650 602 58 1 NC_002967:TDE1568|5end_hypothetical_protein_1619544..1619774_POSITIVE 374 553 513 120 78 NC_002967:TDE1578|5end_phosphoesterase,_putative_1625370..1625600_POSITIVE 362 539 491 197 152 NC_002967:TDE2404|5end_RNA_polymerase_sigma-54_factor,_putative_2430704..2430934_NEGATIVE 358 510 467 109 64 NC_002967:TDE2265|5end_hypothetical_protein_2302165..2302395_POSITIVE 358 510 467 88 43 NC_002967:TDE0402|5end_hypothetical_protein_454352..454582_NEGATIVE 358 510 467 210 165 NC_002967:TDE0401|5end_adenylate/guanylate_cyclase_catalytic_domain_protein_454230..454460_NEGATIVE 355 638 601 231 193 NC_002967:TDE0573|5end_hypothetical_protein_604681..604911_POSITIVE 347 558 511 226 188 NC_002967:TDE2143|5end_penicillin-binding_protein_2178107..2178337_POSITIVE 347 456 412 73 29 NC_002967:TDE1057|5end_hypothetical_protein_1086245..1086475_NEGATIVE 346 129 87 204 160 NC_002967:TDE2057|5end_hypothetical_protein_2085343..2085573_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 860 450 401 130 81 NC_002967:TDE2025|3end_hypothetical_protein_2051075..2051225_NEGATIVE 777 540 491 130 80 NC_002967:TDE1564|3end_hypothetical_protein_1616704..1616854_POSITIVE 666 549 501 139 91 NC_002967:TDE1569|3end_hypothetical_protein_1619975..1620125_POSITIVE 598 659 613 66 18 NC_002967:TDE2021|3end_hypothetical_protein_2044157..2044307_NEGATIVE 568 610 561 52 3 NC_002967:TDE1568|3end_hypothetical_protein_1619827..1619977_POSITIVE 412 450 401 109 61 NC_002967:TDE1008|3end_flagellar_protein,_putative_1032806..1032956_POSITIVE 374 553 513 116 74 NC_002967:TDE1577|3end_lipoprotein,_putative_1625446..1625596_POSITIVE 347 456 412 86 42 NC_002967:TDE1058|3end_hypothetical_protein_1086232..1086382_NEGATIVE 339 305 284 142 117 NC_002967:TDE0616|3end_hypothetical_protein_650079..650229_POSITIVE 336 456 413 82 42 NC_002967:TDE0665|3end_pyruvate_ferredoxin/flavodoxin_oxidoreductase_family_protein_699792..699942_NEGATIVE 330 639 600 130 82 NC_002967:TDE0244|3end_ABC_transporter,_ATP-binding/permease_protein_277489..277639_NEGATIVE 326 539 493 79 33 NC_002967:TDE1530|3end_hypothetical_protein_1575096..1575246_NEGATIVE 326 456 414 47 8 NC_002967:TDE0664|3end_OmpA_family_protein_699728..699878_POSITIVE 317 328 286 51 16 NC_002967:TDE0452|3end_hypothetical_protein_509949..510099_NEGATIVE 316 540 491 150 96 NC_002967:TDE1893|3end_GTP-binding_protein_LepA_1912212..1912362_NEGATIVE 310 648 601 60 17 NC_002967:TDE2310|3end_hypothetical_protein_2348256..2348406_POSITIVE 308 650 601 72 27 NC_002967:TDE1977|3end_hypothetical_protein_1991348..1991498_POSITIVE 305 456 412 111 64 NC_002967:TDE0723|3end_hypothetical_protein_761661..761811_POSITIVE 305 456 412 91 44 NC_002967:TDE0715|3end_hypothetical_protein_750550..750700_POSITIVE 301 496 453 101 58 NC_002967:TDE2135|3end_hypothetical_protein_2165418..2165568_POSITIVE