Origin IGS: aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tatatagttatatttaaaaataacgtctaacacccgcttcaacctgacattgcggacgagccgcaaagcaggttaagcgaatgttagaccgatgccttcggcacgataaactgtaactttgaaaaatagggtgtattttttataaattaaagcataaaaccaaaattaatagcttatgttctttggataaagttatgttttattataatatctacttgtataagaaaaataaaactttaatctttggattttaaaacttgttaaggaagttaacgagttaaaagtccttcggacggtcatggtaattataataattaacttgttaatgaaaactaaagttttatctaaggattttaaactagctaaggaaatcaacaaaataaaagtccttcggacggtcatggtgattataataattaagttgttaaagaaaaataaagttttagttttgattttaatgatttagtaattaaaaagttgtatagttaaaaaataaagttttattgttaagaataagtttataattttaagatgatattatttataaaaggtttgttttgtaaataatatagaattatagttaaattaatagtttttaatatatgcattaagtaatatgaaagttggatatgcaaataataaagttttatattaaaatt Mask Tandem Repeat Region ================================================ aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Find is-nt database================================================ Query_seq: TDE1830:TDE1831|TDE1830:TDE1831:hypothetical protein:hypothetical protein:-><-:1863846..1864504 659 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1830:TDE1831|TDE1830:TDE1831:hypothetical protein:hypothetical protein:-><-:1863846..1864504 659 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1830:TDE1831|TDE1830:TDE1831:hypothetical protein:hypothetical protein:-><-:1863846..1864504 659 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Predict ORF larger than 30AA ================================================ Protein_Len: 43 Strand: + Start: 10 End: 138 ......... M K L Y Y L H I Q L S Y Y L M H I L K T I N L T I I L Y Y L Q N K P F I N N I I L K L ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 198 End: 464 ..................................................................................................................................................................................................... M I K I K T K T L F F F N N L I I I I T M T V R R T F I L L I S L A S L K S L D K T L V F I N K L I I I I T M T V R R T ................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 524 End: 643 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H P I F Q S Y S L S C R R H R S N I R L T C F A A R P Q C Q V E A G V R R Y F ................ Protein_Len: 42 Strand: - Start: 409 End: 534 ........................................................................................................................................................................................................................................................................................................................................................................................................................ F G F I L T K N K K Y L Y I N Y Y F M V K D L S C L S N I K T K H K L K Y F I C G M ............................................................................................................................. Protein_Len: 60 Strand: - Start: 197 End: 412 .................................................................................................................................................................................................... L L K I I I I V M V T R L V K I K N I E K A L K F D K S L V K T K M L L N I I I I V M V T R L V K L E N V E K V L K L M ....................................................................................................................................................................................................................................................... aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 49 HP_score: -4.2 Tail_Score: -2.76313 Start: 91 End: 124 Full_Region: TTAACTATAATTCTA TATTATTTACAAAA CAAACC TTTTATAAATAATA TCATCTTAAAATTAT ..........................................................................................TATTATTTACAAAACAAACCTTTTATAAATAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 39 HP_score: -2.4 Tail_Score: -2.92293 Start: 93 End: 122 Full_Region: AACTATAATTCTATA TTATTTACAAAA CAAACC TTTTATAAATAA TATCATCTTAAAATT ............................................................................................TTATTTACAAAACAAACCTTTTATAAATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 87 HP_score: -6.8 Tail_Score: -5.28831 Start: 264 End: 274 Full_Region: ATAATCACCATGACC GTCC GAA GGAC TTTTATTTTGTTGAT .......................................................................................................................................................................................................................................................................GTCCGAAGGAC................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 73 HP_score: -6.8 Tail_Score: -4.23892 Start: 366 End: 376 Full_Region: ATAATTACCATGACC GTCC GAA GGAC TTTTAACTCGTTAAC .............................................................................................................................................................................................................................................................................................................................................................................GTCCGAAGGAC........................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 51 HP_score: -2.6 Tail_Score: -4.13767 Start: 383 End: 403 Full_Region: CCGAAGGACTTTTAA CTCGTTAA CTTCC TTAACAAG TTTTAAAATCCAAAG ..............................................................................................................................................................................................................................................................................................................................................................................................CTCGTTAACTTCCTTAACAAG................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 39 HP_score: -2.9 Tail_Score: -2.52896 Start: 518 End: 540 Full_Region: gataaactgtaactt tgaaaaata gggtg tatttttta taaattaaagcataa .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaaaaatagggtgtatttttta....................................................................................................................... TransTerm Strand: + Conf: 85 HP_score: -10.5 Tail_Score: -3.08349 Start: 579 End: 627 Full_Region: GGCATCGGTCTAACA TTCGCTTAACCTGCTTTGCGG CTCGT CCGCAATGTCAGGTTGAAGCGGG TGTTAGACGTTATTT ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTTAACCTGCTTTGCGGCTCGTCCGCAATGTCAGGTTGAAGCGGG................................ Find igs database================================================ Query_seq: TDE1830:TDE1831|TDE1830:TDE1831:hypothetical protein:hypothetical protein:-><-:1863846..1864504 659 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatcttaaaattataaacttattcttaacaataaaactttattttttaactatacaactttttaattactaaatcattaaaatcaaaactaaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata Intra-Species Hit: Count: 9 Min: 1 Max: 659 Len: 659 Subject: NC_002967_TDE1830_TDE1831|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1863846,1864504]|659 HSP 1 e-value: 0.0 bit: 852.0 Len: 430 Query Start:230 Query End:659 Subject Strand: POSITIVE Subject Start: 230 Subject End: 659 .....................................................................................................................................................................................................................................ctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata .....................................................................................................................................................................................................................................ctttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacgttatttttaaatataactatata HSP 2 e-value: 9.0E-67 bit: 256.0 Len: 129 Query Start:1 Query End:129 Subject Strand: POSITIVE Subject Start: 1 Subject End: 129 aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. aattttaatataaaactttattatttgcatatccaactttcatattacttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatatcatc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 3 e-value: 5.0E-19 bit: 97.6 Len: 65 Query Start:317 Query End:381 Subject Strand: POSITIVE Subject Start: 215 Subject End: 279 ............................................................................................................................................................................................................................................................................................................................taaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggactttta...................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................taaaactttatttttctttaacaacttaattattataatcaccatgaccgtccgaaggactttta...................................................................................................................................................................................................................................................................................... Subject: NC_002967_TDE1809_TDE1810|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1845404,1846013]|610 HSP 1 e-value: 1.0E-99 bit: 365.0 Len: 390 Query Start:244 Query End:633 Subject Strand: POSITIVE Subject Start: 217 Subject End: 600 ...................................................................................................................................................................................................................................................ttattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacacccta-tttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttag.......................... ...................................................................................................................................................................................................................................................ttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggacttt-atttcattgatttccttaacaaattttaaaatccacagataaaagtttta-tttcattatacaagtagatattat-----aacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaattta-caaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttag.......................... HSP 2 e-value: 5.0E-25 bit: 117.0 Len: 79 Query Start:47 Query End:125 Subject Strand: POSITIVE Subject Start: 10 Subject End: 87 ..............................................acttaatgcatatattaaaaactattaatttaactataattctatattatttacaaaacaaaccttttataaataatat...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..............................................acttaaagcatatattaaaaa-tattaatttaactataattctatattatttacaaaactaatcttttataaataatat...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 7.0E-12 bit: 73.8 Len: 57 Query Start:240 Query End:296 Subject Strand: POSITIVE Subject Start: 315 Subject End: 370 ...............................................................................................................................................................................................................................................ttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttcctta........................................................................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................ttaattattataattaccatgaccgtccgaaggac-tttatttcattgatttcctta........................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002967_TDE1784_TDE1785|transcriptional activator, AraC family:hypothetical protein|NEGATIVE:POSITIVE|[1824514,1825131]|618 HSP 1 e-value: 3.0E-51 bit: 204.0 Len: 293 Query Start:343 Query End:635 Subject Strand: POSITIVE Subject Start: 194 Subject End: 481 ......................................................................................................................................................................................................................................................................................................................................................taattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttagac........................ ......................................................................................................................................................................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaattt-aaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttact-----caaaaaaactaagctattaatttgtgttttaagctttaatttataaaaa-tataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagac........................ HSP 2 e-value: 3.0E-26 bit: 121.0 Len: 81 Query Start:241 Query End:321 Subject Strand: POSITIVE Subject Start: 194 Subject End: 274 ................................................................................................................................................................................................................................................taattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaa.................................................................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaa.................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE1786_TDE1787|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1826239,1826467]|229 HSP 1 e-value: 7.0E-46 bit: 186.0 Len: 105 Query Start:532 Query End:636 Subject Strand: POSITIVE Subject Start: 113 Subject End: 218 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacg....................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttttcaaaattacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgcatttgcggctcgtccgcaatgtcaggttgaagcgggtgttagacg....................... Subject: NC_002967_TDE1788_TDE1789|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1827006,1827427]|422 HSP 1 e-value: 6.0E-43 bit: 176.0 Len: 290 Query Start:344 Query End:633 Subject Strand: POSITIVE Subject Start: 130 Subject End: 417 .......................................................................................................................................................................................................................................................................................................................................................aattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaa---gtagatattataataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctattttt-caaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttag.......................... .......................................................................................................................................................................................................................................................................................................................................................aattattacaattactatgaccgtccaaaggatgtatatttagttgatttccttaataagttttaaaattcttagataaaagttttatttt-cttatataataagtagatattataacaaaactttact-----caaaaaaactaagcttttaatttgggttttatgctttaatttacaaaaac-acaccctattttttcaaagttacagttcatcgtgccgaaggcgtgcgcttaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgagtgttag.......................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 90 Query Start:232 Query End:321 Subject Strand: POSITIVE Subject Start: 120 Subject End: 210 .......................................................................................................................................................................................................................................ttaacaacttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctag-tttaaaatccttagataaaa.................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................ttaataactcaattattacaattactatgaccgtccaaaggatgtatatttagttgatttccttaataagttttaaaattcttagataaaa.................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE1842_TDE1843|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1872096,1872288]|193 HSP 1 e-value: 6.0E-40 bit: 167.0 Len: 122 Query Start:508 Query End:629 Subject Strand: POSITIVE Subject Start: 71 Subject End: 193 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtg.............................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttaatttataaaaa-tatatcctatttttcaaagttacagtttatcgtgccgtaaggcatccgtctaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtg.............................. Subject: NC_002967_TDE1838_TDE1839|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1870256,1870480]|225 HSP 1 e-value: 8.0E-21 bit: 103.0 Len: 151 Query Start:483 Query End:633 Subject Strand: POSITIVE Subject Start: 67 Subject End: 215 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgctttgcggctcgtccgcaatgtcaggttgaagcgggtgttag.......................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ataagcaattaatttgagttttaagctttagtttacaaagaccatatcctgtttttcaaagttacagttcatcgtgccgaaggcatccgtctaacttccgcttaacctgcattgc--cgcaaaggcaatgtcaggttgaagcgggtgttag.......................... Subject: NC_002967_TDE1773_TDE1774|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1817192,1817589]|398 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 137 Query Start:456 Query End:592 Subject Strand: POSITIVE Subject Start: 34 Subject End: 171 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................aataaaacataactttatccaaagaacataagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttaacctgc................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................aataaaacataactttactcacataacctaagttattaatcggagttttaagctttaatttataaaaaatacatcctattcttcaaaattgcagtttatcgtaccgtaaggcgtcgttctaacattcgcctaatctgc................................................................... Subject: NC_002967_TDE1822_TDE1823|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1856013,1856690]|678 HSP 1 e-value: 3.0E-14 bit: 81.8 Len: 64 Query Start:572 Query End:635 Subject Strand: POSITIVE Subject Start: 27 Subject End: 91 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttagac........................ ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagac........................ HSP 2 e-value: 3.0E-8 bit: 61.9 Len: 31 Query Start:75 Query End:105 Subject Strand: POSITIVE Subject Start: 245 Subject End: 275 ..........................................................................tttaactataattctatattatttacaaaac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................tttaactataattctatattatttacaaaac.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-7 bit: 58.0 Len: 57 Query Start:269 Query End:325 Subject Strand: POSITIVE Subject Start: 453 Subject End: 509 ............................................................................................................................................................................................................................................................................aaggacttttattttgttgatttccttagctagtttaaaatccttagataaaacttt.............................................................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................................................................................aaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttt.............................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUUUUAAUAUAAAACUUUAUUAUUUGCAUAUCCAACUUUCAUAUUACUUAAUGCAUAUAUUAAAAACUAUUAAUUUAACUAUAAUUCUAUAUUAUUUACAAAACAAACCUUUUAUAAAUAAUAUCAUCUUAAAAUUAUAAACUUAUUCUUAACAAUAAAACUUUAUUUUUUAACUAUACAACUUUUUAAUUACUAAAUCAUUAAAAUCAAAACUAAAACUUUAUUUUUCUUUAACAACUUAAUUAUUAUAAUCACCAUGACCGUCCGAAGGACUUUUAUUUUGUUGAUUUCCUUAGCUAGUUUAAAAUCCUUAGAUAAAACUUUAGUUUUCAUUAACAAGUUAAUUAUUAUAAUUACCAUGACCGUCCGAAGGACUUUUAACUCGUUAACUUCCUUAACAAGUUUUAAAAUCCAAAGAUUAAAGUUUUAUUUUUCUUAUACAAGUAGAUAUUAUAAUAAAACAUAACUUUAUCCAAAGAACAUAAGCUAUUAAUUUUGGUUUUAUGCUUUAAUUUAUAAAAAAUACACCCUAUUUUUCAAAGUUACAGUUUAUCGUGCCGAAGGCAUCGGUCUAACAUUCGCUUAACCUGCUUUGCGGCUCGUCCGCAAUGUCAGGUUGAAGCGGGUGUUAGACGUUAUUUUUAAAUAUAACUAUAUA ..(((((.(((((...((((.(((.(((((.....................))))).))).))))..(((((........(((((((.(((((((((((.((((......)))).)))))))))......)).)))))))..............((((((((((((.(((((.....((.(((((.((((...................(((((((((..(((((((.........((((...(((....(((((.(((((..((((...))))..)))...)).)))))....)))..))))..........)))))))..)))))))))..(((((.((((((...((((.......))))..((((...))))..)))))).))))).....)))).))))).))......))))).))))))))))))...........)))))...))))).)))))..(((((((....((((.....((((((.......))))))....))))........(((((((.....))))))).)))))))..(((((..(((((...)))))..((((((((((((((((((((((.((((((.....)))))).).))))))).))))))))))))))........)))))........... (-113.11) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUAUAGUUAUAUUUAAAAAUAACGUCUAACACCCGCUUCAACCUGACAUUGCGGACGAGCCGCAAAGCAGGUUAAGCGAAUGUUAGACCGAUGCCUUCGGCACGAUAAACUGUAACUUUGAAAAAUAGGGUGUAUUUUUUAUAAAUUAAAGCAUAAAACCAAAAUUAAUAGCUUAUGUUCUUUGGAUAAAGUUAUGUUUUAUUAUAAUAUCUACUUGUAUAAGAAAAAUAAAACUUUAAUCUUUGGAUUUUAAAACUUGUUAAGGAAGUUAACGAGUUAAAAGUCCUUCGGACGGUCAUGGUAAUUAUAAUAAUUAACUUGUUAAUGAAAACUAAAGUUUUAUCUAAGGAUUUUAAACUAGCUAAGGAAAUCAACAAAAUAAAAGUCCUUCGGACGGUCAUGGUGAUUAUAAUAAUUAAGUUGUUAAAGAAAAAUAAAGUUUUAGUUUUGAUUUUAAUGAUUUAGUAAUUAAAAAGUUGUAUAGUUAAAAAAUAAAGUUUUAUUGUUAAGAAUAAGUUUAUAAUUUUAAGAUGAUAUUAUUUAUAAAAGGUUUGUUUUGUAAAUAAUAUAGAAUUAUAGUUAAAUUAAUAGUUUUUAAUAUAUGCAUUAAGUAAUAUGAAAGUUGGAUAUGCAAAUAAUAAAGUUUUAUAUUAAAAUU ..(((((((...............((((((((..(((((.((((((.(.((((((.....)))))).))))))))))))..))))))))((.((((...))))))...)))))))....(((((((((.....)))))))))....((((.(((((.....(((((((..(((((((.(((((......((((.(((((.......)))))..))))....))))).((((((((((((.((((((((...((((((((.........(((((((((((((..((((...))))....(((.....))).....)))))))))))))........))))))))))))))))........((((((....(((((.((..((....((((...)))).))..)).))))).((((.(((((((..((((((.(((((.........)))))..))))))..))))))).))))..........)))))).....)))))))))))).......)))))))..(((((.(((....(((((((((((((((......)))))))))))))))....))).)))))......))))))).....))))).)))).((((((((((.((...(((....)))...)).))))))))))..... (-147.73) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1080 630 581 201 152 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 1035 630 581 180 130 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 1035 630 581 184 134 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 1035 630 581 179 129 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 1035 630 581 188 138 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 991 630 581 231 181 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 986 630 581 200 150 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 959 630 581 198 148 NC_002967:TDE1823|5end_hypothetical_protein_1856990..1857220_NEGATIVE 959 630 581 182 132 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 959 630 581 217 167 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 959 630 581 170 120 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 910 630 581 177 127 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 910 630 581 202 152 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 882 630 581 177 127 NC_002967:TDE1822|5end_hypothetical_protein_1855922..1856152_NEGATIVE 878 630 581 231 181 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 878 630 581 187 137 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 851 630 581 179 127 NC_002967:TDE1803|5end_hypothetical_protein_1839270..1839500_NEGATIVE 806 620 572 227 178 NC_002967:TDE1799|5end_hypothetical_protein_1837264..1837494_NEGATIVE 765 630 581 191 140 NC_002967:TDE0262|5end_hypothetical_protein_296300..296530_NEGATIVE 725 607 563 231 184 NC_002967:TDE1818|5end_hypothetical_protein_1853791..1854021_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1080 630 581 61 12 NC_002967:TDE1797|3end_hypothetical_protein_1835655..1835805_NEGATIVE 1035 630 581 81 31 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 1035 630 581 80 30 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 1035 630 581 82 32 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 1035 630 581 73 23 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 1035 630 581 91 41 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 1035 630 581 77 27 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 1016 630 581 108 58 NC_002967:TDE1815|3end_hypothetical_protein_1849458..1849608_NEGATIVE 1016 630 581 86 36 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 1007 630 581 80 30 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE 986 630 581 77 27 NC_002967:TDE1821|3end_hypothetical_protein_1854815..1854965_NEGATIVE 986 630 581 82 32 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 969 630 581 86 36 NC_002967:TDE1811|3end_hypothetical_protein_1846773..1846923_NEGATIVE 959 630 581 91 41 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 959 630 581 77 27 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 959 630 581 77 27 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 929 630 581 82 32 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 917 630 581 75 25 NC_002967:TDE0097|3end_hypothetical_protein_114801..114951_POSITIVE 912 630 581 91 41 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE 910 630 581 74 24 NC_002967:TDE1840|3end_hypothetical_protein_1871324..1871474_NEGATIVE