Origin IGS: aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acaaattttaagttttttatttattaaatattgtaataaaaagcaaaatattgtaaaattaaaagcgtaattgttaatattaagttatataaataaaataaaagtgtctaacacgcagttcaagactgacaaaacccgctctgaagagcggccggctagacgccggtacgttttgcagcttaactgcatgttaggttgacaagctgaccgcttgaggaaagacttgtgtggaaccgacctatgaccatttatttcgacttaaaaataaatttataaaatcataggaggattttatggcaaatttttactgtgaatactgtgggatgaagtattcctctgtttcttcattaacatctggttcttgttcaagaagtccaacaagaaggcactcattatacgaaggaaacgaaaaaccaaaatatacttgtaaatattgtggaatgcaatattcaagcatatcttcattaacaagcggttcttgttcaaaaagtccgacaaaaaaacatcatcctgcattatgatatgaagtcagcctaacaagaatcttattattcttgttaggttcatatgccgttagcgtggtaaaattgaaattagaaaggaagacatttatt Mask Tandem Repeat Region ================================================ aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Find is-nt database================================================ Query_seq: TDE1828:TDE1829|TDE1828:TDE1829:hypothetical protein:hypothetical protein:<-<-:1861843..1862456 614 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1828:TDE1829|TDE1828:TDE1829:hypothetical protein:hypothetical protein:<-<-:1861843..1862456 614 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1828:TDE1829|TDE1828:TDE1829:hypothetical protein:hypothetical protein:<-<-:1861843..1862456 614 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 2 End: 106 . M N V F L S N F N F T T L T A Y E P N K N N K I L V R L T S Y H N A G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 50 Strand: + Start: 158 End: 307 ............................................................................................................................................................. M L E Y C I P Q Y L Q V Y F G F S F P S Y N E C L L V G L L E Q E P D V N E E T E E Y F I P Q Y S Q ................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 93 End: 320 ............................................................................................ M I M Q D D V F L S D F L N K N R L L M K I C L N I A F H N I Y K Y I L V F R F L R I M S A F L L D F L N K N Q M L M K ...................................................................................................................................................................................................................................................................................................... Protein_Len: 55 Strand: + Start: 363 End: 527 .......................................................................................................................................................................................................................................................................................................................................................................... M N G H R S V P H K S F L K R S A C Q P N M Q L S C K T Y R R L A G R S S E R V L S V L N C V L D T F I L F I ....................................................................................... Protein_Len: 32 Strand: + Start: 437 End: 532 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Q N V P A S S R P L F R A G F V S L E L R V R H F Y F I Y I T .................................................................................. Protein_Len: 42 Strand: - Start: 419 End: 544 .................................................................................................................................................................................................................................................................................................................................................................................................................................. G L M C N L Q L V Y R R R A P R E E S R T K D T K F Q T N S V K I K N I Y S L I L M ...................................................................... Protein_Len: 38 Strand: - Start: 188 End: 301 ........................................................................................................................................................................................... L Y I K T K R K R R I I L A K K N S K K F L F W I N I F F C L F V E D W L M ......................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 150 End: 260 ..................................................................................................................................................... H L Y A Q I N C E V I N V L I N Q N K T E K T Y H T G E Q Q V E Q V L V M .................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 97 End: 321 ................................................................................................ S T L S S I S S Y Q M G C Y K C T Y K P K E N G E Y L S H R R T P S R S C S G S T L S S V S S Y K M G C Y E C Y F N A M ..................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 92 End: 184 ........................................................................................... I M I C S S T K K D S K K F L F R K N I F I H K F I A N W L M .............................................................................................................................................................................................................................................................................................................................................................................................................................................. aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 556 End: 585 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAATAAAAAGCAAAATATTGTAAAAT............................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 49 HP_score: -3.7 Tail_Score: -3.30443 Start: 48 End: 87 Full_Region: CCACGCTAACGGCAT ATGAACCTAACAAGAAT AATAAG ATTCTTGTTAGGCTGAC TTCATATCATAATGC ...............................................ATGAACCTAACAAGAATAATAAGATTCTTGTTAGGCTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 69 HP_score: -8.9 Tail_Score: -2.5919 Start: 52 End: 83 Full_Region: GCTAACGGCATATGA ACCTAACAAGAAT AATAAG ATTCTTGTTAGGC TGACTTCATATCATA ...................................................ACCTAACAAGAATAATAAGATTCTTGTTAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -12.4 Tail_Score: -3.27994 Start: 53 End: 82 Full_Region: atgatatgaagtcag cctaacaagaat cttatt attcttgttagg ttcatatgccgttag ....................................................cctaacaagaatcttattattcttgttagg.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 47 HP_score: -3.4 Tail_Score: -3.16191 Start: 134 End: 146 Full_Region: GTCGGACTTTTTGAA CAAG AACCG CTTG TTAATGAAGATATGC .....................................................................................................................................CAAGAACCGCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 40 HP_score: -2.1 Tail_Score: -2.66234 Start: 281 End: 303 Full_Region: gcaaatttttactgt gaatact gtgggatga agtattc ctctgtttcttcatt ........................................................................................................................................................................................................................................................................................gaatactgtgggatgaagtattc....................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -6.9 Tail_Score: -4.4727 Start: 463 End: 480 Full_Region: ACCGGCGTCTAGCCG GCCGCTC TTCA GAGCGGG TTTTGTCAGTCTTGA ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTCTTCAGAGCGGG...................................................................................................................................... TransTerm Strand: + Conf: 83 HP_score: -10.4 Tail_Score: -3.27639 Start: 464 End: 479 Full_Region: CCGGCGTCTAGCCGG CCGCTC TTCA GAGCGG GTTTTGTCAGTCTTG ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCTTCAGAGCGG....................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -5.4 Tail_Score: -5.3689 Start: 501 End: 511 Full_Region: TCAGTCTTGAACTGC GTGT TAG ACAC TTTTATTTTATTTAT ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGACAC....................................................................................................... Find igs database================================================ Query_seq: TDE1828:TDE1829|TDE1828:TDE1829:hypothetical protein:hypothetical protein:<-<-:1861843..1862456 614 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacacttttattttatttatataacttaatattaacaattacgcttttaattttacaatattttgctttttattacaatatttaataaataaaaaacttaaaatttgt Intra-Species Hit: Count: 2 Min: 1 Max: 511 Len: 511 Subject: NC_002967_TDE1828_TDE1829|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1861843,1862456]|614 HSP 1 e-value: 0.0 bit: 971.0 Len: 511 Query Start:1 Query End:511 Subject Strand: POSITIVE Subject Start: 1 Subject End: 511 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgnnnnnnngtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacac....................................................................................................... aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacatgcagttaagctgcaaaacgtaccggcgtctagccggccgctcttcagagcgggttttgtcagtcttgaactgcgtgttagacac....................................................................................................... Subject: NC_002967_TDE1776_TDE1777|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1819323,1820045]|723 HSP 1 e-value: 0.0 bit: 789.0 Len: 427 Query Start:1 Query End:427 Subject Strand: POSITIVE Subject Start: 1 Subject End: 427 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgnnnnnnngtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacat........................................................................................................................................................................................... aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacat........................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAAAUGUCUUCCUUUCUAAUUUCAAUUUUACCACGCUAACGGCAUAUGAACCUAACAAGAAUAAUAAGAUUCUUGUUAGGCUGACUUCAUAUCAUAAUGCAGGAUGAUGUUUUUUUGUCGGACUUUUUGAACAAGAACCGCUUGUUAAUGAAGAUAUGCUUGAAUAUUGCAUUCCACAAUAUUUACAAGUAUAUUUUGGUUUUUCGUUUCCUUCGUAUAAUGAGUGCCUUCUUGUUGGACUUCUUGAACAAGAACCAGAUGUUAAUGAAGAAACAGAGGAAUACUUCAUCCCACAGUAUUCACAGUAAAAAUUUGCCAUAAAAUCCUCCUAUGAUUUUAUAAAUUUAUUUUUAAGUCGAAAUAAAUGGUCAUAGGUCGGUUCCACACAAGUCUUUCCUCAAGCGGUCAGCUUGUCAACCUAACAUGCAGUUAAGCUGCAAAACGUACCGGCGUCUAGCCGGCCGCUCUUCAGAGCGGGUUUUGUCAGUCUUGAACUGCGUGUUAGACAC ...(((((((.((((.....................((.....)).((((((((((((((((((......)))))))))))).....)))))).........)))).)))))))...((((.......((((.((((.((((((((..(((.(((((((((((((((((((.......)))))))..)))))))))))).)))....(((((.(((((.(((((..((..((((((((.((....)).)))))))).))..)))))))))))))))....(((((((.........)))))))..((.(((.(((((......((((..(((((((((......(((((((((......))))))))))))))))))..)))).....))))).))).))))))))))...))))))))..((((((((((((((((((((((((...(((((.....)))))((((((....)))))))))))).))).)))).))))))))))))))). (-155.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGUCUAACACGCAGUUCAAGACUGACAAAACCCGCUCUGAAGAGCGGCCGGCUAGACGCCGGUACGUUUUGCAGCUUAACUGCAUGUUAGGUUGACAAGCUGACCGCUUGAGGAAAGACUUGUGUGGAACCGACCUAUGACCAUUUAUUUCGACUUAAAAAUAAAUUUAUAAAAUCAUAGGAGGAUUUUAUGGCAAAUUUUUACUGUGAAUACUGUGGGAUGAAGUAUUCCUCUGUUUCUUCAUUAACAUCUGGUUCUUGUUCAAGAAGUCCAACAAGAAGGCACUCAUUAUACGAAGGAAACGAAAAACCAAAAUAUACUUGUAAAUAUUGUGGAAUGCAAUAUUCAAGCAUAUCUUCAUUAACAAGCGGUUCUUGUUCAAAAAGUCCGACAAAAAAACAUCAUCCUGCAUUAUGAUAUGAAGUCAGCCUAACAAGAAUCUUAUUAUUCUUGUUAGGUUCAUAUGCCGUUAGCGUGGUAAAAUUGAAAUUAGAAAGGAAGACAUUUAUU ....((((((.((((((.(((.(((.((((((((((((....))))))(((((.....)))))...)))))))))))))))))).)))))).((((((((..(((((((((.(((....((((...(((((((........((((....((((...(((((((....((((((((((.......))))))))))...)))))))...))))....))))(((((((.((......))..)))))))......)))))))....))))...))).....((((................(....)...........((((.((((..((((((((.....)))))))))))).)))))))).....))))))))))))).))))...................((.((((........((((((.....(((((((((((((......)))))))))))))))))))((((......))))................)))).))........ (-143.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 952 510 461 222 173 NC_002967:TDE1808|5end_hypothetical_protein_1845049..1845279_NEGATIVE 833 90 41 181 132 NC_002967:TDE1828|5end_hypothetical_protein_1861752..1861982_NEGATIVE 833 90 41 181 132 NC_002967:TDE1776|5end_hypothetical_protein_1819232..1819462_NEGATIVE 462 389 341 151 104 NC_002967:TDE1956|5end_hypothetical_protein_1971114..1971344_POSITIVE 437 460 411 156 113 NC_002967:TDE1816|5end_hypothetical_protein_1851673..1851903_NEGATIVE 402 479 436 203 165 NC_002967:TDE1287|5end_transcription-repair_coupling_factor_1322738..1322968_POSITIVE 391 479 436 154 116 NC_002967:TDE2516|5end_hypothetical_protein_2542021..2542251_POSITIVE 387 480 435 203 164 NC_002967:TDE2268|5end_hypothetical_protein_2304959..2305189_NEGATIVE 385 470 430 70 32 NC_002967:TDE1445|5end_hypothetical_protein_1491927..1492157_NEGATIVE 378 485 444 227 173 NC_002967:TDE0833|5end_lipoprotein,_putative_852992..853222_POSITIVE 374 478 435 62 17 NC_002967:TDE0571|5end_hypothetical_protein_601135..601365_POSITIVE 370 505 465 60 13 NC_002967:TDE1892|5end_hypothetical_protein_1912065..1912295_POSITIVE 356 465 430 161 115 NC_002967:TDE2596|5end_hypothetical_protein_2632039..2632269_NEGATIVE 356 486 441 81 36 NC_002967:TDE0587|5end_hypothetical_protein_625749..625979_POSITIVE 355 500 451 226 159 NC_002967:TDE2399|5end_ribonuclease_P_protein_component_2426160..2426390_NEGATIVE 353 500 453 219 162 NC_002967:TDE1300|5end_hypothetical_protein_1337419..1337649_NEGATIVE 351 484 445 56 15 NC_002967:TDE0239|5end_glycine_reductase_complex_protein_GrdD_272982..273212_NEGATIVE 349 480 431 205 150 NC_002967:TDE0180|5end_hypothetical_protein_213018..213248_NEGATIVE 344 487 445 64 17 NC_002967:TDE0767|5end_ribosomal_protein_L3_806355..806585_POSITIVE 343 459 411 161 109 NC_002967:TDE1794|5end_hypothetical_protein_1832958..1833188_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 952 510 461 56 7 NC_002967:TDE1809|3end_hypothetical_protein_1845215..1845365_NEGATIVE 466 440 398 43 1 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 437 460 411 63 20 NC_002967:TDE1817|3end_hypothetical_protein_1851766..1851916_NEGATIVE 375 507 461 149 99 NC_002967:TDE2423|3end_ribosomal_protein_L10_2453417..2453567_NEGATIVE 373 487 442 95 56 NC_002967:TDE0353|3end_lipase/acylhydrolase,_GDSL_family_396743..396893_NEGATIVE 371 500 451 87 29 NC_002967:TDE2735|3end_surface_antigen,_putative_2791616..2791766_POSITIVE 367 505 465 147 105 NC_002967:TDE1892|3end_hypothetical_protein_1912237..1912387_POSITIVE 362 440 398 98 54 NC_002967:TDE1755|3end_hypothetical_protein_1807187..1807337_POSITIVE 361 486 446 51 13 NC_002967:TDE2210|3end_hypothetical_protein_2249394..2249544_NEGATIVE 360 439 401 41 3 NC_002967:TDE0266|3end_hypothetical_protein_297767..297917_NEGATIVE 354 481 448 84 42 NC_002967:TDE1811|3end_hypothetical_protein_1846773..1846923_NEGATIVE 352 487 444 129 88 NC_002967:TDE2527|3end_hypothetical_protein_2555449..2555599_NEGATIVE 351 500 452 85 28 NC_002967:TDE1803|3end_hypothetical_protein_1838395..1838545_NEGATIVE 351 484 445 43 2 NC_002967:TDE0240|3end_glycine_reductase_complex_protein_GrdC_272995..273145_NEGATIVE 350 471 437 147 108 NC_002967:TDE2057|3end_hypothetical_protein_2085158..2085308_NEGATIVE 343 500 451 137 87 NC_002967:TDE2101|3end_hypothetical_protein_2125549..2125699_NEGATIVE 343 459 411 56 4 NC_002967:TDE1795|3end_funZ_protein,_putative_1833063..1833213_NEGATIVE 342 487 449 131 85 NC_002967:TDE2631|3end_peptide_ABC_transporter,_permease_protein,_putative_2672733..2672883_POSITIVE 342 479 436 112 59 NC_002967:TDE2269|3end_hypothetical_protein_2304931..2305081_NEGATIVE 340 484 449 42 1 NC_002967:TDE1347|3end_hypothetical_protein_1388032..1388182_POSITIVE