Origin IGS: attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaatcaactagcaagctctccaaaactgacaatatctttgtaataatgaattataactattaagcaacaaaatttattttataaattaaattataaaatctaaataaatagcttagtttttactaaatttatattttattataatgagtatttgagtgagaggatgcaaaagttttatctaaggattttaaatttattaaggaaatcgacgaaatataagtcctttggattgtctggtatttataatataacgtagttaatttatataaaattttagttttatagtaaaatttctaatttttagatttaataatcaaaagctgtataggtgttaaaaataaagtcttattattaagaataagattttataattttaagataaatatttttgataaaagatcggttttgtaaataatatagaattatagttaaaatatatgaattattataaaagaaatgtaatggcagatgataaagccttatgtaaaatttaaagctttttatttatgaatatttaagaaaaagcaaaataaggcaataataaaagtgtaattgttaatataagcgatataaataaaataatagtgtctaacacccgcttcaacctgacattacggacaagccgcaaatgcaggttaagcggaagttagatggacacctatcggtgcgaataaaat Mask Tandem Repeat Region ================================================ attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Find is-nt database================================================ Query_seq: TDE1822:TDE1823|TDE1822:TDE1823:hypothetical protein:hypothetical protein:<-<-:1856013..1856690 678 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1822:TDE1823|TDE1822:TDE1823:hypothetical protein:hypothetical protein:<-<-:1856013..1856690 678 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1822:TDE1823|TDE1822:TDE1823:hypothetical protein:hypothetical protein:<-<-:1856013..1856690 678 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 44 End: 160 ........................................... M H L R L V R N V R L K R V L D T I I L F I S L I L T I T L L L L P Y F A F S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 174 End: 323 ............................................................................................................................................................................. M K S F K F Y I R L Y H L P L H F F Y N N S Y I L T I I L Y Y L Q N R S F I K N I Y L K I I K S Y S ................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 406 End: 546 ..................................................................................................................................................................................................................................................................................................................................................................................................................... M L Y K L T T L Y Y K Y Q T I Q R T Y I S S I S L I N L K S L D K T F A S S H S N T H Y N K I .................................................................................................................................... Protein_Len: 50 Strand: - Start: 425 End: 574 ........................................................................................................................................................................................................................................................................................................................................................................................................................................ T I N Y I G S L G F S K Y K T S K R L L N L I R L Y F K Q M R E S L Y E N Y Y F I F K T F V L S N M ........................................................................................................ Protein_Len: 33 Strand: - Start: 270 End: 368 ............................................................................................................................................................................................................................................................................. L V S R K D F I N I K F N Y F R I R L L L V K N K V G I C S K I M ...................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 31 End: 126 .............................. S G S L R C K R S T R L T L N F R T N S V I I K N I D S I N V M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 533 End: 562 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTACTAAATTTATATTTTATTATAAT.................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 573 End: 602 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGATTTTATAATTTAATTTATAAAAT............................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -3.3 Tail_Score: -3.05596 Start: 32 End: 85 Full_Region: aataatagtgtctaa cacccgcttcaacctgacattacgg acaag ccgcaaatgcaggttaagcggaag ttagatggacaccta ...............................cacccgcttcaacctgacattacggacaagccgcaaatgcaggttaagcggaag................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 75 HP_score: -8.9 Tail_Score: -3.04248 Start: 34 End: 83 Full_Region: GGTGTCCATCTAACT TCCGCTTAACCTGCATTTGCGG CTTGT CCGTAATGTCAGGTTGAAGCGGG TGTTAGACACTATTA .................................TCCGCTTAACCTGCATTTGCGGCTTGTCCGTAATGTCAGGTTGAAGCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 60 HP_score: -6.0 Tail_Score: -3.09831 Start: 310 End: 339 Full_Region: tataggtgttaaaaa taaagtcttatt attaag aataagatttta taattttaagataaa .....................................................................................................................................................................................................................................................................................................................taaagtcttattattaagaataagatttta................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 60 HP_score: -3.8 Tail_Score: -4.59109 Start: 310 End: 339 Full_Region: TTTATCTTAAAATTA TAAAATCTTATT CTTAAT AATAAGACTTTA TTTTTAACACCTATA .....................................................................................................................................................................................................................................................................................................................TAAAATCTTATTCTTAATAATAAGACTTTA................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 37 HP_score: -2.3 Tail_Score: -2.55392 Start: 394 End: 413 Full_Region: AATTAGAAATTTTAC TATAAAA CTAAAA TTTTATA TAAATTAACTACGTT .........................................................................................................................................................................................................................................................................................................................................................................................................TATAAAACTAAAATTTTATA......................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -3.2 Tail_Score: -2.86514 Start: 580 End: 601 Full_Region: AGCTATTTATTTAGA TTTTATAA TTTAAT TTATAAAA TAAATTTTGTTGCTT ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAATTTAATTTATAAAA............................................................................. Find igs database================================================ Query_seq: TDE1822:TDE1823|TDE1822:TDE1823:hypothetical protein:hypothetical protein:<-<-:1856013..1856690 678 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacactattattttatttatatcgcttatattaacaattacacttttattattgccttattttgctttttcttaaatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattctatattatttacaaaaccgatcttttatcaaaaatatttatcttaaaattataaaatcttattcttaataataagactttatttttaacacctatacagcttttgattattaaatctaaaaattagaaattttactataaaactaaaattttatataaattaactacgttatattataaataccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactcattataataaaatataaatttagtaaaaactaagctatttatttagattttataatttaatttataaaataaattttgttgcttaatagttataattcattattacaaagatattgtcagttttggagagcttgctagttgatttt Intra-Species Hit: Count: 3 Min: 1 Max: 678 Len: 678 Subject: NC_002967_TDE1822_TDE1823|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1856013,1856690]|678 HSP 1 e-value: 4.0E-47 bit: 190.0 Len: 96 Query Start:163 Query End:258 Subject Strand: POSITIVE Subject Start: 163 Subject End: 258 ..................................................................................................................................................................aatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattc.................................................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................aatattcataaataaaaagctttaaattttacataaggctttatcatctgccattacatttcttttataataattcatatattttaactataattc.................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-45 bit: 184.0 Len: 93 Query Start:1 Query End:93 Subject Strand: POSITIVE Subject Start: 1 Subject End: 93 attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacac......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... attttattcgcaccgataggtgtccatctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagacac......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-44 bit: 182.0 Len: 92 Query Start:441 Query End:532 Subject Strand: POSITIVE Subject Start: 441 Subject End: 532 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactc.................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................ccagacaatccaaaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttttgcatcctctcactcaaatactc.................................................................................................................................................. HSP 4 e-value: 5.0E-19 bit: 97.6 Len: 49 Query Start:630 Query End:678 Subject Strand: POSITIVE Subject Start: 630 Subject End: 678 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattattacaaagatattgtcagttttggagagcttgctagttgatttt .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattattacaaagatattgtcagttttggagagcttgctagttgatttt Subject: NC_002967_TDE1788_TDE1789|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1827006,1827427]|422 HSP 1 e-value: 3.0E-17 bit: 91.7 Len: 54 Query Start:36 Query End:89 Subject Strand: POSITIVE Subject Start: 364 Subject End: 417 ...................................cgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ...................................cgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgagtgttag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-6 bit: 54.0 Len: 62 Query Start:449 Query End:510 Subject Strand: POSITIVE Subject Start: 153 Subject End: 215 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................tccaaaggacttatatttcgtcgatttccttaataa-atttaaaatccttagataaaactttt........................................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................................tccaaaggatgtatatttagttgatttccttaataagttttaaaattcttagataaaagtttt........................................................................................................................................................................ Subject: NC_002967_TDE1830_TDE1831|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1863846,1864504]|659 HSP 1 e-value: 3.0E-14 bit: 81.8 Len: 65 Query Start:27 Query End:91 Subject Strand: POSITIVE Subject Start: 572 Subject End: 635 ..........................tctaacttccgcttaacctgcatttgcggcttgtccgtaatgtcaggttgaagcgggtgttagac........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................tctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttagac........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-7 bit: 58.0 Len: 57 Query Start:453 Query End:509 Subject Strand: POSITIVE Subject Start: 269 Subject End: 325 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaggacttatatttcgtcgatttccttaataaatttaaaatccttagataaaacttt......................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaggacttttattttgttgatttccttagctagtttaaaatccttagataaaacttt......................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUUAUUCGCACCGAUAGGUGUCCAUCUAACUUCCGCUUAACCUGCAUUUGCGGCUUGUCCGUAAUGUCAGGUUGAAGCGGGUGUUAGACACUAUUAUUUUAUUUAUAUCGCUUAUAUUAACAAUUACACUUUUAUUAUUGCCUUAUUUUGCUUUUUCUUAAAUAUUCAUAAAUAAAAAGCUUUAAAUUUUACAUAAGGCUUUAUCAUCUGCCAUUACAUUUCUUUUAUAAUAAUUCAUAUAUUUUAACUAUAAUUCUAUAUUAUUUACAAAACCGAUCUUUUAUCAAAAAUAUUUAUCUUAAAAUUAUAAAAUCUUAUUCUUAAUAAUAAGACUUUAUUUUUAACACCUAUACAGCUUUUGAUUAUUAAAUCUAAAAAUUAGAAAUUUUACUAUAAAACUAAAAUUUUAUAUAAAUUAACUACGUUAUAUUAUAAAUACCAGACAAUCCAAAGGACUUAUAUUUCGUCGAUUUCCUUAAUAAAUUUAAAAUCCUUAGAUAAAACUUUUGCAUCCUCUCACUCAAAUACUCAUUAUAAUAAAAUAUAAAUUUAGUAAAAACUAAGCUAUUUAUUUAGAUUUUAUAAUUUAAUUUAUAAAAUAAAUUUUGUUGCUUAAUAGUUAUAAUUCAUUAUUACAAAGAUAUUGUCAGUUUUGGAGAGCUUGCUAGUUGAUUUU .........(((((....)))))...((((((.(((((((((((((((((.((((.....)))))))).))))))).)))))).))))))................................(((((((((((((...(((((..((((((((.................((((((((.(((((....((((((....(((..........))).........................(((((((((..((((((..((((.(((..((......(((.....(((((((.(((.....((((((..(((((.(((((((......))))))).))))))))))).....)))....)))))))......))).......(((....((((.(((((((......)))))))))))....))).)).))).))))......(((..((.((((((..((((........(((((...(((.....)))))))).....))))..)))))).))..))).............)))))).)))))))))......))))))...))))).)))))))).(((((((((......)))))))))..........)).(((((((........)))))))..))))))..).))))....)))))..)).))))))..... (-104.72) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAUCAACUAGCAAGCUCUCCAAAACUGACAAUAUCUUUGUAAUAAUGAAUUAUAACUAUUAAGCAACAAAAUUUAUUUUAUAAAUUAAAUUAUAAAAUCUAAAUAAAUAGCUUAGUUUUUACUAAAUUUAUAUUUUAUUAUAAUGAGUAUUUGAGUGAGAGGAUGCAAAAGUUUUAUCUAAGGAUUUUAAAUUUAUUAAGGAAAUCGACGAAAUAUAAGUCCUUUGGAUUGUCUGGUAUUUAUAAUAUAACGUAGUUAAUUUAUAUAAAAUUUUAGUUUUAUAGUAAAAUUUCUAAUUUUUAGAUUUAAUAAUCAAAAGCUGUAUAGGUGUUAAAAAUAAAGUCUUAUUAUUAAGAAUAAGAUUUUAUAAUUUUAAGAUAAAUAUUUUUGAUAAAAGAUCGGUUUUGUAAAUAAUAUAGAAUUAUAGUUAAAAUAUAUGAAUUAUUAUAAAAGAAAUGUAAUGGCAGAUGAUAAAGCCUUAUGUAAAAUUUAAAGCUUUUUAUUUAUGAAUAUUUAAGAAAAAGCAAAAUAAGGCAAUAAUAAAAGUGUAAUUGUUAAUAUAAGCGAUAUAAAUAAAAUAAUAGUGUCUAACACCCGCUUCAACCUGACAUUACGGACAAGCCGCAAAUGCAGGUUAAGCGGAAGUUAGAUGGACACCUAUCGGUGCGAAUAAAAU ...........(((..(((((....(((.(.((((((.(((((((((((((((.(((..(((((((......(((((((((((((......))))))))..))))).....)))))))..)))...)))))))....)))))))).)).))))).))))))))..)))..(((((((((.(((((..............(((((.................)))))...((..((((.((((...........(((((.((((((((((.((((.((((((((((...................((((....)))).(((((((......(((((((((((..((((((..((((.(((......))).))))..))))))...)))))))))))......)))))))........)))))))))).))))....)))))))))))))))...........)))).))))..))....))))).)))))))))...(((((((.((((........)))))))))))........(((...(((...((((.((((((......)))))).................(((((((..((((((.((((((.((((.(((.....)))..))))))))))))))))..)))))))..)))).)))...)))......... (-137.08) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 992 60 11 151 102 NC_002967:TDE1822|5end_hypothetical_protein_1855922..1856152_NEGATIVE 987 90 41 184 135 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 987 90 41 221 172 NC_002967:TDE1831|5end_hypothetical_protein_1865032..1865262_NEGATIVE 987 90 41 186 137 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 987 90 41 174 125 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 978 90 42 181 133 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 978 90 42 206 158 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 978 90 42 204 156 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 971 89 41 187 139 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 971 89 41 182 134 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 971 89 41 220 172 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 971 89 41 191 143 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 931 90 41 205 157 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 906 90 41 191 142 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 880 80 34 231 185 NC_002967:TDE1799|5end_hypothetical_protein_1837264..1837494_NEGATIVE 845 86 41 231 186 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 841 86 41 231 186 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 831 88 41 181 132 NC_002967:TDE1803|5end_hypothetical_protein_1839270..1839500_NEGATIVE 810 89 41 194 145 NC_002967:TDE0262|5end_hypothetical_protein_296300..296530_NEGATIVE 728 89 41 193 144 NC_002967:TDE0279|5end_hypothetical_protein_309782..310012_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 987 90 41 85 36 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 987 90 41 81 32 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 987 90 41 81 32 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 987 90 41 77 28 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 978 90 42 78 30 NC_002967:TDE1840|3end_hypothetical_protein_1871324..1871474_NEGATIVE 978 90 42 85 37 NC_002967:TDE1836|3end_hypothetical_protein_1868514..1868664_NEGATIVE 978 90 42 81 33 NC_002967:TDE1821|3end_hypothetical_protein_1854815..1854965_NEGATIVE 978 90 42 86 38 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 978 90 42 78 30 NC_002967:TDE1800|3end_hypothetical_protein_1837427..1837577_NEGATIVE 971 89 41 94 46 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 971 89 41 83 35 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 971 89 41 85 37 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 971 89 41 94 46 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 971 89 41 80 32 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 968 90 41 90 41 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 962 89 42 80 33 NC_002967:TDE1810|3end_hypothetical_protein_1845924..1846074_NEGATIVE 944 89 41 94 46 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE 943 89 41 83 35 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE 941 89 41 85 37 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 931 90 41 65 17 NC_002967:TDE1831|3end_hypothetical_protein_1864415..1864565_NEGATIVE