Origin IGS: ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgtagtaaacctaacacccgcttcaacctgacattgcggacaagccgcaaatgcaggtcaagcgaatgttagaccgatgccttcggcacgataaactgtaactttgaaaaaatagggtgtgtttttgtaaattaaagcgtaaagcccaaattaaaagcttagtttttttgagtaaagttttgttataatatctacttgtataatgaaataaaacttttatctgtggattttaaaatttgttaaggaaatcaatgaaataaagtccttcggacggtcatggtaattataataattaacttagtgaggaatataaaacttttatcttagaattttaaactagttaaggaaatcaacaagttaaaagtccttcggacggtcatggtgattataataaatatttgctaagtaaaataaaattttagctttatagtaaaattatagatttttttaatttaatgattaaaagctgtctaggttaaaaataaagtcttattgttaagagtaggcttataattttaagataatattatttataaaagattagttttgtaaataatatagaattatagttaaattaatatttttaatatatgctttaagtgatgtaaag Mask Tandem Repeat Region ================================================ ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Find is-nt database================================================ Query_seq: TDE1809:TDE1810|TDE1809:TDE1810:hypothetical protein:hypothetical protein:<-<-:1845404..1846013 610 ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1809:TDE1810|TDE1809:TDE1810:hypothetical protein:hypothetical protein:<-<-:1845404..1846013 610 ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1809:TDE1810|TDE1809:TDE1810:hypothetical protein:hypothetical protein:<-<-:1845404..1846013 610 ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 391 End: 585 ...................................................................................................................................................................................................................................................................................................................................................................................................... M K V L F H Y T S R Y Y N K T L L K K T K L L I W A L R F N L Q K H T L F F Q S Y S L S C R R H R S N I R L T C I C G L ......................... ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 56 HP_score: -4.2 Tail_Score: -3.6947 Start: 53 End: 86 Full_Region: TTAACTATAATTCTA TATTATTTACAAAA CTAATC TTTTATAAATAATA TTATCTTAAAATTAT ....................................................TATTATTTACAAAACTAATCTTTTATAAATAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 74 HP_score: -6.8 Tail_Score: -4.36729 Start: 237 End: 247 Full_Region: ATAATCACCATGACC GTCC GAA GGAC TTTTAACTTGTTGAT ............................................................................................................................................................................................................................................GTCCGAAGGAC........................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 78 HP_score: -6.8 Tail_Score: -4.59212 Start: 339 End: 349 Full_Region: ATAATTACCATGACC GTCC GAA GGAC TTTATTTCATTGATT ..................................................................................................................................................................................................................................................................................................................................................GTCCGAAGGAC..................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 63 HP_score: -6.7 Tail_Score: -3.21807 Start: 545 End: 594 Full_Region: GGCATCGGTCTAACA TTCGCTTGACCTGCATTTGCGG CTTGT CCGCAATGTCAGGTTGAAGCGGG TGTTAGGTTTACTAC ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTTGACCTGCATTTGCGGCTTGTCCGCAATGTCAGGTTGAAGCGGG................ TransTerm Strand: + Conf: 67 HP_score: -8.0 Tail_Score: -2.52602 Start: 546 End: 593 Full_Region: GCATCGGTCTAACAT TCGCTTGACCTGCATTTGCGG CTTGT CCGCAATGTCAGGTTGAAGCGG GTGTTAGGTTTACTA .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTTGACCTGCATTTGCGGCTTGTCCGCAATGTCAGGTTGAAGCGG................. Find igs database================================================ Query_seq: TDE1809:TDE1810|TDE1809:TDE1810:hypothetical protein:hypothetical protein:<-<-:1845404..1846013 610 ctttacatcacttaaagcatatattaaaaatattaatttaactataattctatattatttacaaaactaatcttttataaataatattatcttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Intra-Species Hit: Count: 8 Min: 91 Max: 610 Len: 520 Subject: NC_002967_TDE1809_TDE1810|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1845404,1846013]|610 HSP 1 e-value: 0.0 bit: 948.0 Len: 520 Query Start:91 Query End:610 Subject Strand: POSITIVE Subject Start: 91 Subject End: 610 ..........................................................................................cttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattnnnnnnntctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcnnnnnnnctaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca ..........................................................................................cttaaaattataagcctactcttaacaataagactttatttttaacctagacagcttttaatcattaaattaaaaaaatctataattttactataaagctaaaattttattttacttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggactttatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttaggtttactaca Subject: NC_002967_TDE1788_TDE1789|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1827006,1827427]|422 HSP 1 e-value: 2.0E-76 bit: 287.0 Len: 284 Query Start:317 Query End:600 Subject Strand: POSITIVE Subject Start: 130 Subject End: 417 ............................................................................................................................................................................................................................................................................................................................aattattataattaccatgaccgtccgaaggactt-tatttcattgatttccttaacaaattttaaaatccacagataaaagttttatttcattatacaa---gtagatattataacaaaactttactcnnnnnnnctaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttag.......... ............................................................................................................................................................................................................................................................................................................................aattattacaattactatgaccgtccaaaggatgtatatttagttgatttccttaataagttttaaaattcttagataaaagttttattttcttatataataagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggttttatgctttaatttacaaaaacacaccctattttttcaaagttacagttcatcgtgccgaaggcgtgcgcttaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgagtgttag.......... Subject: NC_002967_TDE1784_TDE1785|transcriptional activator, AraC family:hypothetical protein|NEGATIVE:POSITIVE|[1824514,1825131]|618 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 277 Query Start:316 Query End:592 Subject Strand: POSITIVE Subject Start: 194 Subject End: 471 ...........................................................................................................................................................................................................................................................................................................................taattattataattaccatgaccgtccgaaggacttt-atttcattgatttccttaacaaattttaaaatccacagataaaagttttattt-cattatacaagtagatattataacaaaactttactcnnnnnnnctaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcg.................. ...........................................................................................................................................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaattt-aaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacattttt-caaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcg.................. HSP 2 e-value: 7.0E-24 bit: 113.0 Len: 105 Query Start:205 Query End:309 Subject Strand: POSITIVE Subject Start: 185 Subject End: 289 ............................................................................................................................................................................................................cttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctca............................................................................................................................................................................................................................................................................................................. ............................................................................................................................................................................................................cttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctca............................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE1830_TDE1831|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1863846,1864504]|659 HSP 1 e-value: 3.0E-54 bit: 214.0 Len: 218 Query Start:217 Query End:434 Subject Strand: POSITIVE Subject Start: 244 Subject End: 463 ........................................................................................................................................................................................................................ttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctcactaagttaattattataattaccatgaccgtccgaaggacttt-atttcattgatttccttaacaaattttaaaatccacagataaaagtttta-tttcattatacaagtagatattataacaaaac................................................................................................................................................................................ ........................................................................................................................................................................................................................ttattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaactttagttttcattaacaagttaattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaac................................................................................................................................................................................ HSP 2 e-value: 4.0E-47 bit: 190.0 Len: 151 Query Start:450 Query End:600 Subject Strand: POSITIVE Subject Start: 484 Subject End: 633 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................taagcttttaatttgggctttacgctttaatttacaaaaac-acaccctattttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttag.......... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................taagctattaattttggttttatgctttaatttataaaaaatacaccctatttt-tcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttag.......... HSP 3 e-value: 6.0E-12 bit: 73.8 Len: 56 Query Start:315 Query End:370 Subject Strand: POSITIVE Subject Start: 240 Subject End: 296 ..........................................................................................................................................................................................................................................................................................................................ttaattattataattaccatgaccgtccgaaggac-tttatttcattgatttcctta................................................................................................................................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................ttaattattataatcaccatgaccgtccgaaggacttttattttgttgatttcctta................................................................................................................................................................................................................................................ HSP 4 e-value: 6.0E-6 bit: 54.0 Len: 43 Query Start:91 Query End:133 Subject Strand: POSITIVE Subject Start: 129 Subject End: 171 ..........................................................................................cttaaaattataagcctactcttaacaataagactttattttt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................cttaaaattataaacttattcttaacaataaaactttattttt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE1842_TDE1843|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1872096,1872288]|193 HSP 1 e-value: 6.0E-43 bit: 176.0 Len: 140 Query Start:457 Query End:596 Subject Strand: POSITIVE Subject Start: 54 Subject End: 193 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtg.............. ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaattggggctttaaactttaatttataaaaatatatcctattttt-caaagttacagtttatcgtgccgtaaggcatccgtctaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtg.............. Subject: NC_002967_TDE1786_TDE1787|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1826239,1826467]|229 HSP 1 e-value: 6.0E-43 bit: 176.0 Len: 101 Query Start:500 Query End:600 Subject Strand: POSITIVE Subject Start: 115 Subject End: 215 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttag.......... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttttcaaaattacagtttatcgtgccgaaggcatcggtctaacattcgcttaacctgcatttgcggctcgtccgcaatgtcaggttgaagcgggtgttag.......... Subject: NC_002967_TDE1802_TDE1803|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1838199,1838484]|286 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 107 Query Start:457 Query End:563 Subject Strand: POSITIVE Subject Start: 54 Subject End: 160 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttgacctgcatttg............................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaattggggctttaaactttaatttataaaaatatatcctatttt-tcaaagttacagtttatcgtgccgtaaggcatccgtctaactgccgcttaacctgcatttg............................................... Subject: NC_002967_TDE1838_TDE1839|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1870256,1870480]|225 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 102 Query Start:500 Query End:601 Subject Strand: POSITIVE Subject Start: 118 Subject End: 216 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttttcaaagttacagtttatcgtgccgaaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagg......... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttttcaaagttacagttcatcgtgccgaaggcatccgtctaacttccgcttaacctgca-ttgccgcaaag--gcaatgtcaggttgaagcgggtgttagg......... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUAAAAUUAUAAGCCUACUCUUAACAAUAAGACUUUAUUUUUAACCUAGACAGCUUUUAAUCAUUAAAUUAAAAAAAUCUAUAAUUUUACUAUAAAGCUAAAAUUUUAUUUUACUUAGCAAAUAUUUAUUAUAAUCACCAUGACCGUCCGAAGGACUUUUAACUUGUUGAUUUCCUUAACUAGUUUAAAAUUCUAAGAUAAAAGUUUUAUAUUCCUCACUAAGUUAAUUAUUAUAAUUACCAUGACCGUCCGAAGGACUUUAUUUCAUUGAUUUCCUUAACAAAUUUUAAAAUCCACAGAUAAAAGUUUUAUUUCAUUAUACAAGUAGAUAUUAUAACAAAACUUUACUCAAAAAAACUAAGCUUUUAAUUUGGGCUUUACGCUUUAAUUUACAAAAACACACCCUAUUUUUUCAAAGUUACAGUUUAUCGUGCCGAAGGCAUCGGUCUAACAUUCGCUUGACCUGCAUUUGCGGCUUGUCCGCAAUGUCAGGUUGAAGCGGGUGUUAGGUUUACUACA ....((((((.(((((((((..(((.(((((((((((....(((((.(((.....(((((((......)))))))................(((((((((.....(((((((((................................((((...))))....((((.(((((.....))))).))))........)))))))))))))))))).......))).)))))....................((...(((((..(((......)))..))))).)).....................)))))))))))...)))....)))))...............................((((((.......))))))...))))))))))....((((............................((((((((...)))).))))(((((((((((((((((((((((.((((.....)))))))).)))))).)))))))))))))))))...... (-92.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGUAGUAAACCUAACACCCGCUUCAACCUGACAUUGCGGACAAGCCGCAAAUGCAGGUCAAGCGAAUGUUAGACCGAUGCCUUCGGCACGAUAAACUGUAACUUUGAAAAAAUAGGGUGUGUUUUUGUAAAUUAAAGCGUAAAGCCCAAAUUAAAAGCUUAGUUUUUUUGAGUAAAGUUUUGUUAUAAUAUCUACUUGUAUAAUGAAAUAAAACUUUUAUCUGUGGAUUUUAAAAUUUGUUAAGGAAAUCAAUGAAAUAAAGUCCUUCGGACGGUCAUGGUAAUUAUAAUAAUUAACUUAGUGAGGAAUAUAAAACUUUUAUCUUAGAAUUUUAAACUAGUUAAGGAAAUCAACAAGUUAAAAGUCCUUCGGACGGUCAUGGUGAUUAUAAUAAAUAUUUGCUAAGUAAAAUAAAAUUUUAGCUUUAUAGUAAAAUUAUAGAUUUUUUUAAUUUAAUGAUUAAAAGCUGUCUAGGUUAAAAAUAAAGUCUUAUUGUUAAGAGUAGGCUUAUAAUUUUAAG ..((((....((((((..(((((..(((((.((((((((.....)))).))))))))).)))))..))))))..((.((((...))))))....))))................((((.((((((........))))))....)))).(((((.(((((((.((((...((..(((((((((((.((.((((.....).))).)).)))))))))))..))...((((((((...((..(((((.......((((......((((...))))..))))..((((((...)))))).)))))..))...........(((((.((((((.((((((.(.(((((((((((((...(((((((((((((...)))).....(((..(.(((.....))).)..)))............)))))))))((((((...)))))))))))))))))))....).))))))....)))))).))))).)))))))).......)))).))))))).)))))..... (-112.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1033 510 461 180 131 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 1033 510 461 205 156 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 1033 510 461 203 154 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 1010 510 461 183 134 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 1010 510 461 220 171 NC_002967:TDE1831|5end_hypothetical_protein_1865032..1865262_NEGATIVE 1010 510 461 187 138 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 1010 510 461 201 152 NC_002967:TDE1823|5end_hypothetical_protein_1856990..1857220_NEGATIVE 1010 510 461 185 136 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 1010 510 461 182 133 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 1010 510 461 220 171 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 1010 510 461 173 124 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 1010 510 461 191 142 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 984 500 451 230 181 NC_002967:TDE1799|5end_hypothetical_protein_1837264..1837494_NEGATIVE 954 510 461 204 156 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 933 510 461 180 131 NC_002967:TDE1822|5end_hypothetical_protein_1855922..1856152_NEGATIVE 929 510 461 190 141 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 887 500 451 224 175 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 883 500 451 224 175 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 870 509 461 181 131 NC_002967:TDE1803|5end_hypothetical_protein_1839270..1839500_NEGATIVE 829 480 431 227 173 NC_002967:TDE1818|5end_hypothetical_protein_1853791..1854021_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1033 510 461 77 28 NC_002967:TDE1840|3end_hypothetical_protein_1871324..1871474_NEGATIVE 1033 510 461 84 35 NC_002967:TDE1836|3end_hypothetical_protein_1868514..1868664_NEGATIVE 1033 510 461 80 31 NC_002967:TDE1821|3end_hypothetical_protein_1854815..1854965_NEGATIVE 1033 510 461 85 36 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 1033 510 461 77 28 NC_002967:TDE1800|3end_hypothetical_protein_1837427..1837577_NEGATIVE 1010 510 461 94 45 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 1010 510 461 84 35 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 1010 510 461 80 31 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 1010 510 461 83 34 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 1010 510 461 85 36 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 1010 510 461 80 31 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 1010 510 461 76 27 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 1010 510 461 94 45 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 1010 510 461 80 31 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 991 510 461 89 40 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 983 510 461 94 45 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE 982 510 461 83 34 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE 980 510 461 85 36 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 968 510 461 78 29 NC_002967:TDE0097|3end_hypothetical_protein_114801..114951_POSITIVE 959 510 461 111 62 NC_002967:TDE1815|3end_hypothetical_protein_1849458..1849608_NEGATIVE