Origin IGS: ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atttttttctaatggataaattgcacggtttaactgatgccaaagaaagctccatttttacacatggtacgttaagaaaaacaaaagttttattcaaagattttataacttgttaagaaaatcaacaaaataaaagtgtctaacattcgcttcaacctgacattgcggacaagccgcaaatgcaggttaagcggtagttagacagatgccttacggcacgataaactgtaactttgaaaaatgtggtatatttttataaattaaagcttaaaacacaaattaatagcttagtttttttgagtaaagttttgttataatatctacttgtatgaggaaaataaaacttttatctaagtattttaaatttgctaagtaaatcaacaaaataaaagtccttcggacggtcgtggtgattataataattacttgctaagacaatttataaaaaaccactgaaatgattatgggggctgaaaaacagattttgagagaagttctaataattttattggaattattaacttataaaacttgtttaatcctataaaatttgtacaaaaaatattgggacggtaagatatttttttatataatttccataacattacaggaggaaag Mask Tandem Repeat Region ================================================ ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Find is-nt database================================================ Query_seq: TDE1784:TDE1785|TDE1784:TDE1785:transcriptional activator, AraC family:hypothetical protein:<-->:1824514..1825131 618 ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1784:TDE1785|TDE1784:TDE1785:transcriptional activator, AraC family:hypothetical protein:<-->:1824514..1825131 618 ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1784:TDE1785|TDE1784:TDE1785:transcriptional activator, AraC family:hypothetical protein:<-->:1824514..1825131 618 ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 14 End: 154 ............. M L W K L Y K K I S Y R P N I F C T N F I G L N K F Y K L I I P I K L L E L L S K S V F Q P P ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 180 End: 269 ................................................................................................................................................................................... M V L A S N Y Y N H H D R P K D F Y F V D L L S K F K I L R ............................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 196 End: 336 ................................................................................................................................................................................................... M I I I T T T V R R T F I L L I Y L A N L K Y L D K S F I F L I Q V D I I T K L Y S K K L S Y .......................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 434 End: 526 ................................................................................................................................................................................................................................................................................................................................................................................................................................................. M H L R L V R N V R L K R M L D T F I L L I F L T S Y K I F E ............................................................................................ Protein_Len: 35 Strand: + Start: 513 End: 617 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K S L N K T F V F L N V P C V K M E L S L A S V K P C N L S I R K K . Protein_Len: 34 Strand: - Start: 506 End: 607 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C T I F D K F L V K T K R L T G H T F I S S E K A D T L G H L K D M ........... ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 357 End: 386 ....................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAATGTGGTATATTTTTATAAATT........................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 490 End: 519 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGATTTTCTTAACAAGTTATAAAAT................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 521 End: 550 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATAAAACTTTTGTTTTTCTTAACGT.................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 88 HP_score: -6.8 Tail_Score: -5.28831 Start: 217 End: 227 Full_Region: ATAATCACCACGACC GTCC GAA GGAC TTTTATTTTGTTGAT ........................................................................................................................................................................................................................GTCCGAAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 50 HP_score: -4.5 Tail_Score: -3.06009 Start: 424 End: 473 Full_Region: GGCATCTGTCTAACT ACCGCTTAACCTGCATTTGCGG CTTGT CCGCAATGTCAGGTTGAAGCGAA TGTTAGACACTTTTA .......................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTTAACCTGCATTTGCGGCTTGTCCGCAATGTCAGGTTGAAGCGAA................................................................................................................................................. TransTerm Strand: - Conf: 78 HP_score: -10.2 Tail_Score: -2.71364 Start: 425 End: 472 Full_Region: aaaagtgtctaacat tcgcttcaacctgacattgcgg acaag ccgcaaatgcaggttaagcgg tagttagacagatgc ........................................................................................................................................................................................................................................................................................................................................................................................................................................tcgcttcaacctgacattgcggacaagccgcaaatgcaggttaagcgg.................................................................................................................................................. TransTerm Strand: + Conf: 40 HP_score: -2.5 Tail_Score: -2.62449 Start: 491 End: 509 Full_Region: TTAGACACTTTTATT TTGTTGA TTTTC TTAACAA GTTATAAAATCTTTG ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGATTTTCTTAACAA............................................................................................................. Find igs database================================================ Query_seq: TDE1784:TDE1785|TDE1784:TDE1785:transcriptional activator, AraC family:hypothetical protein:<-->:1824514..1825131 618 ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattagaaaaaaat Intra-Species Hit: Count: 7 Min: 1 Max: 610 Len: 610 Subject: NC_002967_TDE1784_TDE1785|transcriptional activator, AraC family:hypothetical protein|NEGATIVE:POSITIVE|[1824514,1825131]|618 HSP 1 e-value: 0.0 bit: 1126.0 Len: 610 Query Start:1 Query End:610 Subject Strand: POSITIVE Subject Start: 1 Subject End: 610 ctttcctcctgtaatgttatggaaattatatnnnnnnntatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcnnnnnnnctaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattag........ ctttcctcctgtaatgttatggaaattatataaaaaaatatcttaccgtcccaatattttttgtacaaattttataggattaaacaagttttataagttaataattccaataaaattattagaacttctctcaaaatctgtttttcagcccccataatcatttcagtggttttttataaattgtcttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcaaaaaaactaagctattaatttgtgttttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagacacttttattttgttgattttcttaacaagttataaaatctttgaataaaacttttgtttttcttaacgtaccatgtgtaaaaatggagctttctttggcatcagttaaaccgtgcaatttatccattag........ Subject: NC_002967_TDE1809_TDE1810|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1845404,1846013]|610 HSP 1 e-value: 8.0E-61 bit: 236.0 Len: 278 Query Start:194 Query End:471 Subject Strand: POSITIVE Subject Start: 316 Subject End: 592 .................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaattt-aaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaactttactcnnnnnnnctaagctattaatttgtgttttaagctttaatttataaaaatataccacattttt-caaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcg................................................................................................................................................... .................................................................................................................................................................................................taattattataattaccatgaccgtccgaaggacttt-atttcattgatttccttaacaaattttaaaatccacagataaaagttttattt-cattatacaagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggctttacgctttaatttacaaaaacacaccctattttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcg................................................................................................................................................... HSP 2 e-value: 8.0E-24 bit: 113.0 Len: 105 Query Start:185 Query End:289 Subject Strand: POSITIVE Subject Start: 205 Subject End: 309 ........................................................................................................................................................................................cttagcaagtaattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaagttttattttcctca......................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................cttagcaaatatttattataatcaccatgaccgtccgaaggacttttaacttgttgatttccttaactagtttaaaattctaagataaaagttttatattcctca......................................................................................................................................................................................................................................................................................................................................... Subject: NC_002967_TDE1842_TDE1843|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1872096,1872288]|193 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 125 Query Start:347 Query End:471 Subject Strand: POSITIVE Subject Start: 65 Subject End: 189 ..........................................................................................................................................................................................................................................................................................................................................................tttaagctttaatttataaaaatataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcg................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................tttaaactttaatttataaaaatatatcctatttttcaaagttacagtttatcgtgccgtaaggcatccgtctaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcg................................................................................................................................................... Subject: NC_002967_TDE1788_TDE1789|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1827006,1827427]|422 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 285 Query Start:195 Query End:479 Subject Strand: POSITIVE Subject Start: 130 Subject End: 417 ..................................................................................................................................................................................................aattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaattt-aaaatacttagataaaagttttattttcctc-atac-aagtagatattataacaaaactttactcnnnnnnnctaagctattaatttgtgttttaagctttaatttataaaaatataccacattttt-caaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttag........................................................................................................................................... ..................................................................................................................................................................................................aattattacaattactatgaccgtccaaaggatgtatatttagttgatttccttaataagttttaaaattcttagataaaagttttattttcttatataataagtagatattataacaaaactttactcaaaaaaactaagcttttaatttgggttttatgctttaatttacaaaaacacaccctattttttcaaagttacagttcatcgtgccg-aaggcgtgcgcttaacattcgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgagtgttag........................................................................................................................................... Subject: NC_002967_TDE1830_TDE1831|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1863846,1864504]|659 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 153 Query Start:329 Query End:481 Subject Strand: POSITIVE Subject Start: 484 Subject End: 635 ........................................................................................................................................................................................................................................................................................................................................taagctattaatttgtgttttaagctttaatttataaaaa-tataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagac......................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................taagctattaattttggttttatgctttaatttataaaaaatacaccctatttttcaaagttacagtttatcgtgccg-aaggcatcggtctaacattcgcttaacctgc-tttgcggctcgtccgcaatgtcaggttgaagcgggtgttagac......................................................................................................................................... HSP 2 e-value: 3.0E-26 bit: 121.0 Len: 81 Query Start:194 Query End:274 Subject Strand: POSITIVE Subject Start: 241 Subject End: 321 .................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaaatttaaaatacttagataaaa........................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................................................taattattataatcaccatgaccgtccgaaggacttttattttgttgatttccttagctagtttaaaatccttagataaaa........................................................................................................................................................................................................................................................................................................................................................ HSP 3 e-value: 1.0E-16 bit: 89.7 Len: 120 Query Start:194 Query End:313 Subject Strand: POSITIVE Subject Start: 343 Subject End: 463 .................................................................................................................................................................................................taattattataatcaccacgaccgtccgaaggacttttattttgttgatttacttagcaa-atttaaaatacttagataaaagttttattttcctcatacaagtagatattataacaaaac................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................taattattataattaccatgaccgtccgaaggacttttaactcgttaacttccttaacaagttttaaaatccaaagattaaagttttatttttcttatacaagtagatattataataaaac................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE1786_TDE1787|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1826239,1826467]|229 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 105 Query Start:377 Query End:481 Subject Strand: POSITIVE Subject Start: 114 Subject End: 217 ........................................................................................................................................................................................................................................................................................................................................................................................atttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatttgcggcttgtccgcaatgtcaggttgaagcgaatgttagac......................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................atttttcaaaattacagtttatcgtgccg-aaggcatcggtctaacattcgcttaacctgcatttgcggctcgtccgcaatgtcaggttgaagcgggtgttagac......................................................................................................................................... Subject: NC_002967_TDE1838_TDE1839|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1870256,1870480]|225 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 112 Query Start:329 Query End:440 Subject Strand: POSITIVE Subject Start: 68 Subject End: 179 ........................................................................................................................................................................................................................................................................................................................................taagctattaatttgtgttttaagctttaatttataaaaat-ataccacatttttcaaagttacagtttatcgtgccgtaaggcatctgtctaactaccgcttaacctgcatt.................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................taagcaattaatttgagttttaagctttagtttacaaagaccatatcctgtttttcaaagttacagttcatcgtgccg-aaggcatccgtctaacttccgcttaacctgcatt.................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUUUCCUCCUGUAAUGUUAUGGAAAUUAUAUAAAAAAAUAUCUUACCGUCCCAAUAUUUUUUGUACAAAUUUUAUAGGAUUAAACAAGUUUUAUAAGUUAAUAAUUCCAAUAAAAUUAUUAGAACUUCUCUCAAAAUCUGUUUUUCAGCCCCCAUAAUCAUUUCAGUGGUUUUUUAUAAAUUGUCUUAGCAAGUAAUUAUUAUAAUCACCACGACCGUCCGAAGGACUUUUAUUUUGUUGAUUUACUUAGCAAAUUUAAAAUACUUAGAUAAAAGUUUUAUUUUCCUCAUACAAGUAGAUAUUAUAACAAAACUUUACUCAAAAAAACUAAGCUAUUAAUUUGUGUUUUAAGCUUUAAUUUAUAAAAAUAUACCACAUUUUUCAAAGUUACAGUUUAUCGUGCCGUAAGGCAUCUGUCUAACUACCGCUUAACCUGCAUUUGCGGCUUGUCCGCAAUGUCAGGUUGAAGCGAAUGUUAGACACUUUUAUUUUGUUGAUUUUCUUAACAAGUUAUAAAAUCUUUGAAUAAAACUUUUGUUUUUCUUAACGUACCAUGUGUAAAAAUGGAGCUUUCUUUGGCAUCAGUUAAACCGUGCAAUUUAUCCAUUAG .....(..(((.((((((((((..........(((((((((............)))))))))..............((...(((((..((((..((((((((((((.......))))))))..)))).....))))..))))).....)).)))))).)))).)))..)......(((((((((.(((((..((.((((...)))).)).......(.((((((((.(((((.((((((((.....))))))))..))))).....(((((((((((((((((.............((((.(((((((........................................((((((.((((((..((((((.......))))))..)))))).))))))..(((((....))))).((((((((...(((((((((((((((.((((.....)))))))).))))))).))))...))))))))........(((((((.....)))))))))))))).))))..)))))))))))))))))........((.((((........)))).)).)))))))))....))))).....)))))))))....... (-123.36) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUAAUGGAUAAAUUGCACGGUUUAACUGAUGCCAAAGAAAGCUCCAUUUUUACACAUGGUACGUUAAGAAAAACAAAAGUUUUAUUCAAAGAUUUUAUAACUUGUUAAGAAAAUCAACAAAAUAAAAGUGUCUAACAUUCGCUUCAACCUGACAUUGCGGACAAGCCGCAAAUGCAGGUUAAGCGGUAGUUAGACAGAUGCCUUACGGCACGAUAAACUGUAACUUUGAAAAAUGUGGUAUAUUUUUAUAAAUUAAAGCUUAAAACACAAAUUAAUAGCUUAGUUUUUUUGAGUAAAGUUUUGUUAUAAUAUCUACUUGUAUGAGGAAAAUAAAACUUUUAUCUAAGUAUUUUAAAUUUGCUAAGUAAAUCAACAAAAUAAAAGUCCUUCGGACGGUCGUGGUGAUUAUAAUAAUUACUUGCUAAGACAAUUUAUAAAAAACCACUGAAAUGAUUAUGGGGGCUGAAAAACAGAUUUUGAGAGAAGUUCUAAUAAUUUUAUUGGAAUUAUUAACUUAUAAAACUUGUUUAAUCCUAUAAAAUUUGUACAAAAAAUAUUGGGACGGUAAGAUAUUUUUUUAUAUAAUUUCCAUAACAUUACAGGAGGAAAG ..((((((......((((((.....))).)))..........))))))....(((((............(((((....))))).(((((((...(((((..(((((......................((((((((..((((((.((((((.((((((((.....)))).))))))))))))))))..))))))))..((((....)))).)))))..))))))))))))..))))).....((((((((((((...((((((((...(((((((....))))))))))))))).((((.((((((((((..((((((((..(((((.......((((......)))).......((((((...))))))..............)))))...))))..))))..))))))))))..))))........)))))))))))).((.(((.((((.((((((..(.....((((((.(((((.(((.((((((((((....)))))))))).....))).))))).))))))..(((((....((((.......))))..)))))..((((((.....))))))....)..)))))))))).)))..)).... (-133.99) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1013 470 421 178 129 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 960 470 421 164 115 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 941 470 425 192 147 NC_002967:TDE1823|5end_hypothetical_protein_1856990..1857220_NEGATIVE 908 470 426 174 130 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 908 470 426 211 167 NC_002967:TDE1831|5end_hypothetical_protein_1865032..1865262_NEGATIVE 908 470 426 176 132 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 908 470 426 173 129 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 908 470 426 211 167 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 908 470 426 182 138 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 902 470 421 173 122 NC_002967:TDE1803|5end_hypothetical_protein_1839270..1839500_NEGATIVE 893 480 432 181 133 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 893 480 432 206 158 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 893 480 432 204 156 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 892 470 425 231 186 NC_002967:TDE1799|5end_hypothetical_protein_1837264..1837494_NEGATIVE 883 470 421 171 122 NC_002967:TDE1822|5end_hypothetical_protein_1855922..1856152_NEGATIVE 852 470 426 195 152 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 831 470 426 225 181 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 827 470 426 225 181 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 827 470 426 181 137 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 729 50 1 141 92 NC_002967:TDE1784|5end_transcriptional_activator,_AraC_family_1824423..1824653_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1013 470 421 74 25 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 985 470 421 74 25 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE 960 470 421 71 22 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 922 470 425 69 24 NC_002967:TDE0097|3end_hypothetical_protein_114801..114951_POSITIVE 908 470 426 85 41 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 908 470 426 75 31 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 908 470 426 71 27 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 908 470 426 76 32 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 908 470 426 76 32 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 908 470 426 67 23 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 908 470 426 85 41 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 908 470 426 71 27 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 894 470 421 80 31 NC_002967:TDE1811|3end_hypothetical_protein_1846773..1846923_NEGATIVE 893 480 432 78 30 NC_002967:TDE1840|3end_hypothetical_protein_1871324..1871474_NEGATIVE 893 480 432 85 37 NC_002967:TDE1836|3end_hypothetical_protein_1868514..1868664_NEGATIVE 893 480 432 81 33 NC_002967:TDE1821|3end_hypothetical_protein_1854815..1854965_NEGATIVE 893 480 432 86 38 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 893 480 432 78 30 NC_002967:TDE1800|3end_hypothetical_protein_1837427..1837577_NEGATIVE 889 470 426 80 36 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 881 470 426 85 41 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE