Origin IGS: aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgctagaaaaacactatgaatttaaaggtaattataaaatatctaatagtattgattaaaatactattagtttttttagcagaagatattaaaacgagtgaagtatctgcaaaagctagtgtatttcttgcaaatactaaattaagattatcaaatttatgtaatgaattgtgcgattgaagagtcattataaaatttaaaagactttcataagagttttaagaatatgtatatagaaagtctaacacccgcttcaacctgacattgcggacaagccgcaaatgcaggtcaagcgaatgttaggttgacaagctgaccgcttgcggaaagatttgtgtggaaccgacctatgaccatttatttcgacttaaaaataaatttataaaatcataggaggattttatggcaaatttttactgtgaatactgtgggatgaagtattcctctgtttcttcattaacatctggttcttgttcaagaagtccaacaagaaggcactcattatacgaaggaaacgaaaaaccaaaatatacttgtaaatattgtggaatgcaatattcaagcatatcttcattaacaagcggttcttgttcaaaaagtccgacaaaaaaacatcatcctgcattatgatatgaagtcagcctaacaagaatcttattattcttgttaggttcatatgccgttagcgtggtaaaattgaaattagaaaggaagacatttatt Mask Tandem Repeat Region ================================================ aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Find is-nt database================================================ Query_seq: TDE1776:TDE1777|TDE1776:TDE1777:hypothetical protein:hypothetical protein:<-<-:1819323..1820045 723 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1776:TDE1777|TDE1776:TDE1777:hypothetical protein:hypothetical protein:<-<-:1819323..1820045 723 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1776:TDE1777|TDE1776:TDE1777:hypothetical protein:hypothetical protein:<-<-:1819323..1820045 723 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 2 End: 106 . M N V F L S N F N F T T L T A Y E P N K N N K I L V R L T S Y H N A G ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 158 End: 307 ............................................................................................................................................................. M L E Y C I P Q Y L Q V Y F G F S F P S Y N E C L L V G L L E Q E P D V N E E T E E Y F I P Q Y S Q ................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 93 End: 320 ............................................................................................ M I M Q D D V F L S D F L N K N R L L M K I C L N I A F H N I Y K Y I L V F R F L R I M S A F L L D F L N K N Q M L M K ................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 363 End: 467 .......................................................................................................................................................................................................................................................................................................................................................................... M N G H R S V P H K S F R K R S A C Q P N I R L T C I C G L S A M S G ................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 533 End: 718 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M M T L Q S H N S L H K F D N L N L V F A R N T L A F A D T S L V L I S S A K K T N S I L I N T I R Y F I I T F K F I V ..... Protein_Len: 54 Strand: - Start: 547 End: 708 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. D C L E N C L N S L R L K T N A L F V S A K A S V E S T K I D E A L F V L L I K I L V I L Y K I I V K L N M ............... Protein_Len: 38 Strand: - Start: 188 End: 301 ........................................................................................................................................................................................... L Y I K T K R K R R I I L A K K N S K K F L F W I N I F F C L F V E D W L M ...................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 150 End: 260 ..................................................................................................................................................... H L Y A Q I N C E V I N V L I N Q N K T E K T Y H T G E Q Q V E Q V L V M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 97 End: 321 ................................................................................................ S T L S S I S S Y Q M G C Y K C T Y K P K E N G E Y L S H R R T P S R S C S G S T L S S V S S Y K M G C Y E C Y F N A M .................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: - Start: 92 End: 184 ........................................................................................... I M I C S S T K K D S K K F L F R K N I F I H K F I A N W L M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 664 End: 693 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATCAATACTATTAGATATTTTATAAT.............................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 48 HP_score: -3.7 Tail_Score: -3.30443 Start: 48 End: 87 Full_Region: CCACGCTAACGGCAT ATGAACCTAACAAGAAT AATAAG ATTCTTGTTAGGCTGAC TTCATATCATAATGC ...............................................ATGAACCTAACAAGAATAATAAGATTCTTGTTAGGCTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 71 HP_score: -8.9 Tail_Score: -2.5919 Start: 52 End: 83 Full_Region: GCTAACGGCATATGA ACCTAACAAGAAT AATAAG ATTCTTGTTAGGC TGACTTCATATCATA ...................................................ACCTAACAAGAATAATAAGATTCTTGTTAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 90 HP_score: -12.4 Tail_Score: -3.27994 Start: 53 End: 82 Full_Region: atgatatgaagtcag cctaacaagaat cttatt attcttgttagg ttcatatgccgttag ....................................................cctaacaagaatcttattattcttgttagg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 46 HP_score: -3.4 Tail_Score: -3.16191 Start: 134 End: 146 Full_Region: GTCGGACTTTTTGAA CAAG AACCG CTTG TTAATGAAGATATGC .....................................................................................................................................CAAGAACCGCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 40 HP_score: -2.1 Tail_Score: -2.66234 Start: 281 End: 303 Full_Region: gcaaatttttactgt gaatact gtgggatga agtattc ctctgtttcttcatt ........................................................................................................................................................................................................................................................................................gaatactgtgggatgaagtattc.................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 46 HP_score: -3.3 Tail_Score: -3.17194 Start: 425 End: 478 Full_Region: atatagaaagtctaa cacccgcttcaacctgacattgcgg acaag ccgcaaatgcaggtcaagcgaatg ttaggttgacaagct ........................................................................................................................................................................................................................................................................................................................................................................................................................................cacccgcttcaacctgacattgcggacaagccgcaaatgcaggtcaagcgaatg..................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 62 HP_score: -6.7 Tail_Score: -3.14528 Start: 427 End: 476 Full_Region: CTTGTCAACCTAACA TTCGCTTGACCTGCATTTGCGG CTTGT CCGCAATGTCAGGTTGAAGCGGG TGTTAGACTTTCTAT ..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTTGACCTGCATTTGCGGCTTGTCCGCAATGTCAGGTTGAAGCGGG....................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 60 HP_score: -2.6 Tail_Score: -4.56093 Start: 651 End: 684 Full_Region: TATCTTCTGCTAAAA AAACTAATAGTATT TTAATC AATACTATTAGATA TTTTATAATTACCTT ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTAATAGTATTTTAATCAATACTATTAGATA....................................... TransTerm Strand: + Conf: 61 HP_score: -5.2 Tail_Score: -3.8823 Start: 653 End: 682 Full_Region: TCTTCTGCTAAAAAA ACTAATAGTATT TTAATC AATACTATTAGA TATTTTATAATTACC ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATAGTATTTTAATCAATACTATTAGA......................................... TransTerm Strand: - Conf: 100 HP_score: -8.7 Tail_Score: -5.40072 Start: 654 End: 681 Full_Region: gtaattataaaatat ctaatagtatt gattaa aatactattag tttttttagcagaag .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctaatagtattgattaaaatactattag.......................................... Find igs database================================================ Query_seq: TDE1776:TDE1777|TDE1776:TDE1777:hypothetical protein:hypothetical protein:<-<-:1819323..1820045 723 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Intra-Species Hit: Count: 3 Min: 1 Max: 723 Len: 723 Subject: NC_002967_TDE1776_TDE1777|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1819323,1820045]|723 HSP 1 e-value: 0.0 bit: 1350.0 Len: 723 Query Start:1 Query End:723 Subject Strand: POSITIVE Subject Start: 1 Subject End: 723 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgnnnnnnngtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctnnnnnnnctaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Subject: NC_002967_TDE1828_TDE1829|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1861843,1862456]|614 HSP 1 e-value: 0.0 bit: 789.0 Len: 427 Query Start:1 Query End:427 Subject Strand: POSITIVE Subject Start: 1 Subject End: 427 aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgnnnnnnngtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaaatctttccgcaagcggtcagcttgtcaacctaacat........................................................................................................................................................................................................................................................................................................ aataaatgtcttcctttctaatttcaattttaccacgctaacggcatatgaacctaacaagaataataagattcttgttaggctgacttcatatcataatgcaggatgatgtttttttgtcggactttttgaacaagaaccgcttgttaatgaagatatgcttgaatattgcattccacaatatttacaagtatattttggtttttcgtttccttcgtataatgagtgccttcttgttggacttcttgaacaagaaccagatgttaatgaagaaacagaggaatacttcatcccacagtattcacagtaaaaatttgccataaaatcctcctatgattttataaatttatttttaagtcgaaataaatggtcataggtcggttccacacaagtctttcctcaagcggtcagcttgtcaacctaacat........................................................................................................................................................................................................................................................................................................ Subject: NC_002967_TDE1832_TDE1833|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1866012,1866366]|355 HSP 1 e-value: 1.0E-158 bit: 559.0 Len: 303 Query Start:421 Query End:723 Subject Strand: POSITIVE Subject Start: 53 Subject End: 355 ....................................................................................................................................................................................................................................................................................................................................................................................................................................ctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctnnnnnnnctaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca ....................................................................................................................................................................................................................................................................................................................................................................................................................................ctaacattcgcttgacctgcatttgcggcttgtccgcaatgtcaggttgaagcgggtgttagactttctatatacatattcttaaaactcttatgaaagtcttttaaattttataatgactcttcaatcgcacaattcattacataaatttgataatcttaatttagtatttgcaagaaatacactagcttttgcagatacttcactcgttttaatatcttctgctaaaaaaactaatagtattttaatcaatactattagatattttataattacctttaaattcatagtgtttttctagca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAAAUGUCUUCCUUUCUAAUUUCAAUUUUACCACGCUAACGGCAUAUGAACCUAACAAGAAUAAUAAGAUUCUUGUUAGGCUGACUUCAUAUCAUAAUGCAGGAUGAUGUUUUUUUGUCGGACUUUUUGAACAAGAACCGCUUGUUAAUGAAGAUAUGCUUGAAUAUUGCAUUCCACAAUAUUUACAAGUAUAUUUUGGUUUUUCGUUUCCUUCGUAUAAUGAGUGCCUUCUUGUUGGACUUCUUGAACAAGAACCAGAUGUUAAUGAAGAAACAGAGGAAUACUUCAUCCCACAGUAUUCACAGUAAAAAUUUGCCAUAAAAUCCUCCUAUGAUUUUAUAAAUUUAUUUUUAAGUCGAAAUAAAUGGUCAUAGGUCGGUUCCACACAAAUCUUUCCGCAAGCGGUCAGCUUGUCAACCUAACAUUCGCUUGACCUGCAUUUGCGGCUUGUCCGCAAUGUCAGGUUGAAGCGGGUGUUAGACUUUCUAUAUACAUAUUCUUAAAACUCUUAUGAAAGUCUUUUAAAUUUUAUAAUGACUCUUCAAUCGCACAAUUCAUUACAUAAAUUUGAUAAUCUUAAUUUAGUAUUUGCAAGAAAUACACUAGCUUUUGCAGAUACUUCACUCGUUUUAAUAUCUUCUGCUAAAAAAACUAAUAGUAUUUUAAUCAAUACUAUUAGAUAUUUUAUAAUUACCUUUAAAUUCAUAGUGUUUUUCUAGCA ....................................((((..((((((((((((((((((((((......))))))))))))..................((((((.((((((....((..(((((((((((.((((.(((((((((.(((.(((((((((((((((((((.......)))))))..)))))))))))).)))....(((((.(((((.(((((..((..((((((((.((....)).)))))))).))..)))))))))))))))....(((((((.........))))))).........(((((......((((..(((((((((......(((((((((......))))))))))))))))))..)))).....)))))......)))))))))...)))))))..(((((((((((((((((((((((.((((.....)))))))).)))))).)))))))))))))................................)))))))).((((((((..((((((.................))))))...))))))))............(((((((((((((...........))))))))))))).....))....))))))))))))........(((((((((((......)))))))))))......................))))).)))))....)))). (-183.53) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGCUAGAAAAACACUAUGAAUUUAAAGGUAAUUAUAAAAUAUCUAAUAGUAUUGAUUAAAAUACUAUUAGUUUUUUUAGCAGAAGAUAUUAAAACGAGUGAAGUAUCUGCAAAAGCUAGUGUAUUUCUUGCAAAUACUAAAUUAAGAUUAUCAAAUUUAUGUAAUGAAUUGUGCGAUUGAAGAGUCAUUAUAAAAUUUAAAAGACUUUCAUAAGAGUUUUAAGAAUAUGUAUAUAGAAAGUCUAACACCCGCUUCAACCUGACAUUGCGGACAAGCCGCAAAUGCAGGUCAAGCGAAUGUUAGGUUGACAAGCUGACCGCUUGCGGAAAGAUUUGUGUGGAACCGACCUAUGACCAUUUAUUUCGACUUAAAAAUAAAUUUAUAAAAUCAUAGGAGGAUUUUAUGGCAAAUUUUUACUGUGAAUACUGUGGGAUGAAGUAUUCCUCUGUUUCUUCAUUAACAUCUGGUUCUUGUUCAAGAAGUCCAACAAGAAGGCACUCAUUAUACGAAGGAAACGAAAAACCAAAAUAUACUUGUAAAUAUUGUGGAAUGCAAUAUUCAAGCAUAUCUUCAUUAACAAGCGGUUCUUGUUCAAAAAGUCCGACAAAAAAACAUCAUCCUGCAUUAUGAUAUGAAGUCAGCCUAACAAGAAUCUUAUUAUUCUUGUUAGGUUCAUAUGCCGUUAGCGUGGUAAAAUUGAAAUUAGAAAGGAAGACAUUUAUU (((.(((((.((((((..................(((((...(((((((((((......)))))))))))...)))))(((((.(.((((......))))...).)))))......)))))).))))).)))....((((.((((..((((((..((((((((...........((((....))))........((((..(((((((......)))))))..))))...)))))))).(..((((((..(((((..(((((.((((((((.....)))).))))))))).)))))..))))))..).....((((((.((..((((((((((((((((((((((..(((((((..((((((((........))))))))........))))))).)).)))))).)))))))))).))))..(((.((..((((((.((.......((((..............(((((.((((..((..(((((........)).)))..))..)))).(....)....)))))..((((.((((..((((((((.....)))))))))))).)))).......))))..(((..(((.......))).)))........)).))))))..)).))).((((((.....(((((((((((((......))))))))))))))))))))).)))))).))))))..))))..))))................. (-176.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1031 480 431 178 129 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 1031 480 431 203 154 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 1031 480 431 201 152 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 1008 480 431 181 132 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 1008 480 431 218 169 NC_002967:TDE1831|5end_hypothetical_protein_1865032..1865262_NEGATIVE 1008 480 431 185 136 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 1008 480 431 199 150 NC_002967:TDE1823|5end_hypothetical_protein_1856990..1857220_NEGATIVE 1008 480 431 183 134 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 1008 480 431 180 131 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 1008 480 431 218 169 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 1008 480 431 171 122 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 1008 480 431 189 140 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 986 470 421 228 179 NC_002967:TDE1799|5end_hypothetical_protein_1837264..1837494_NEGATIVE 952 480 431 202 154 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 931 480 431 178 129 NC_002967:TDE1822|5end_hypothetical_protein_1855922..1856152_NEGATIVE 927 480 431 188 139 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 922 479 431 231 183 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 918 479 431 231 183 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 897 480 431 180 129 NC_002967:TDE1803|5end_hypothetical_protein_1839270..1839500_NEGATIVE 833 90 41 181 132 NC_002967:TDE1828|5end_hypothetical_protein_1861752..1861982_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1031 480 431 75 26 NC_002967:TDE1840|3end_hypothetical_protein_1871324..1871474_NEGATIVE 1031 480 431 82 33 NC_002967:TDE1836|3end_hypothetical_protein_1868514..1868664_NEGATIVE 1031 480 431 78 29 NC_002967:TDE1821|3end_hypothetical_protein_1854815..1854965_NEGATIVE 1031 480 431 78 29 NC_002967:TDE1810|3end_hypothetical_protein_1845924..1846074_NEGATIVE 1031 480 431 83 34 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 1031 480 431 75 26 NC_002967:TDE1800|3end_hypothetical_protein_1837427..1837577_NEGATIVE 1008 480 431 92 43 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 1008 480 431 82 33 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 1008 480 431 78 29 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 1008 480 431 81 32 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 1008 480 431 83 34 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 1008 480 431 78 29 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 1008 480 431 74 25 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 1008 480 431 92 43 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 1008 480 431 78 29 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 989 480 431 87 38 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 981 480 431 92 43 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE 980 480 431 81 32 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE 978 480 431 83 34 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 966 480 431 76 27 NC_002967:TDE0097|3end_hypothetical_protein_114801..114951_POSITIVE