Origin IGS: ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcctattttatactgctctataacatcattgcacaaaatgctttttgcaatcttttctatttcgggttgggttagttcgccctgaatatcgtaggtttttccgctggtaatttcttcaacgccgagaataccgagttctttgaccgcccttaaggcttcgcgtgaagatgagtccgtaactcccggctttaaggctgtttcgatatggaaaatattttttttatcttctattataaagccttcggtttggctgtactcataaagctcatcgcaaaacaagaagtcggccagtacctttttttcttcatttgaaagatttccgcgtacaaaataaagtgtttcggtatttatttctttaacggctttaaagccgagaacatgggcctgctttaaaagctcttcatttttgggtatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ccacccctaccttgaatttttcccccgcttcaagtatacttaacaatatagaatcgttcaaaatccatcggaagttaagaggttgtctatgaatatttaccgattttgtgttaaaagcaagaaaggcttacactttcaaatacccaaaaatgaagagcttttaaagcaggcccatgttctcggctttaaagccgttaaagaaataaataccgaaacactttattttgtacgcggaaatctttcaaatgaagaaaaaaaggtactggccgacttcttgttttgcgatgagctttatgagtacagccaaaccgaaggctttataatagaagataaaaaaaatattttccatatcgaaacagccttaaagccgggagttacggactcatcttcacgcgaagccttaagggcggtcaaagaactcggtattctcggcgttgaagaaattaccagcggaaaaacctacgatattcagggcgaactaacccaacccgaaatagaaaagattgcaaaaagcattttgtgcaatgatgttatagagcagtataaaataggctttgtagaacctgcatgggctcatgaacatgacggaaaaaatgaacctaatacaagagttgaactcatagacatagcctcc Mask Tandem Repeat Region ================================================ ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcctattttatactgctctataacatcattgcacaaaatgctttttgcaatcttttctatttcgggttgggttagttcgccctgaatatcgtaggtttttccgctggtaatttcttcaacgccgagaataccgagttctttgaccgcccttaaggcttcgcgtgaagatgagtccgtaactcccggctttaaggctgtttcgatatggaaaatattttttttatcttctattataaagccttcggtttggctgtactcataaagctcatcgcaaaacaagaagtcggccagtacctttttttcttcatttgaaagatttccgcgtacaaaataaagtgtttcggtatttatttctttaacggctttaaagccgagaacatgggcctgctttaaaagctcttcatttttgggtatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Find is-nt database================================================ Query_seq: TDE1279:TDE1280|TDE1279:TDE1280:phosphoribosylformylglycinamidine synthase II:hypothetical protein:<-<-:1315206..1315839 634 ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcctattttatactgctctataacatcattgcacaaaatgctttttgcaatcttttctatttcgggttgggttagttcgccctgaatatcgtaggtttttccgctggtaatttcttcaacgccgagaataccgagttctttgaccgcccttaaggcttcgcgtgaagatgagtccgtaactcccggctttaaggctgtttcgatatggaaaatattttttttatcttctattataaagccttcggtttggctgtactcataaagctcatcgcaaaacaagaagtcggccagtacctttttttcttcatttgaaagatttccgcgtacaaaataaagtgtttcggtatttatttctttaacggctttaaagccgagaacatgggcctgctttaaaagctcttcatttttgggtatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1279:TDE1280|TDE1279:TDE1280:phosphoribosylformylglycinamidine synthase II:hypothetical protein:<-<-:1315206..1315839 634 ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcctattttatactgctctataacatcattgcacaaaatgctttttgcaatcttttctatttcgggttgggttagttcgccctgaatatcgtaggtttttccgctggtaatttcttcaacgccgagaataccgagttctttgaccgcccttaaggcttcgcgtgaagatgagtccgtaactcccggctttaaggctgtttcgatatggaaaatattttttttatcttctattataaagccttcggtttggctgtactcataaagctcatcgcaaaacaagaagtcggccagtacctttttttcttcatttgaaagatttccgcgtacaaaataaagtgtttcggtatttatttctttaacggctttaaagccgagaacatgggcctgctttaaaagctcttcatttttgggtatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE1279:TDE1280|TDE1279:TDE1280:phosphoribosylformylglycinamidine synthase II:hypothetical protein:<-<-:1315206..1315839 634 ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcctattttatactgctctataacatcattgcacaaaatgctttttgcaatcttttctatttcgggttgggttagttcgccctgaatatcgtaggtttttccgctggtaatttcttcaacgccgagaataccgagttctttgaccgcccttaaggcttcgcgtgaagatgagtccgtaactcccggctttaaggctgtttcgatatggaaaatattttttttatcttctattataaagccttcggtttggctgtactcataaagctcatcgcaaaacaagaagtcggccagtacctttttttcttcatttgaaagatttccgcgtacaaaataaagtgtttcggtatttatttctttaacggctttaaagccgagaacatgggcctgctttaaaagctcttcatttttgggtatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 6 Min: 85 Max: 492 Len: 408 Subject: UniRef90_Q1WYQ0 Cluster: Phosphoribosylformylglycinamidine; n=1; Pelotomaculum thermopropionicum SI|Rep: Phosphoribosylformylglycinamidine - Pelotomaculum thermopropionicum SI HSP 1 e-value: 2.0E-9 bit: 65.1 Len: 393 Query Start:97 Query End:489 Subject Strand: null Subject Start: 17 Subject End: 146 ................................................................................................ K N E E L L K Q A - H V L G F K A V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L Y E Y S Q T E G F I I E D K K N I F H I E T A L K P G V T D S S S R E A L R A V K E L G I L G V E E I T S G K T Y D I Q G - E L T Q P E I E K I A K S I L C N D V I E ................................................................................................................................................. ................................................................................................ K G E D V L Y E I N H A L G I K N V E K V R T A R V Y R F E G - I G K D D A A Y L A E K L L A E D V F Q F Y R I N G P V I E G A E V I - - L E V A Y K P G V M N P E A A S L I K S A A D L G I S G L V A A D S C W E Y G F Y G K E I T G A E I E R I V N S L L V N A T V E ................................................................................................................................................. Subject: UniRef90_Q3ZZB9 Cluster: Phosphoribosylformylglycinamidine synthase II; n=3; Dehalococcoides|Rep: Phosphoribosylformylglycinamidine synthase II - Dehalococcoides sp. (strain CBDB1) HSP 1 e-value: 3.0E-9 bit: 64.3 Len: 396 Query Start:97 Query End:492 Subject Strand: null Subject Start: 15 Subject End: 147 ................................................................................................ P K N E E L L K Q A H V L G F K A V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L Y E - Y S Q T E G F I I E D K K N I F H I E T A L K P G V T D S S S R E A L R A V K E L G I L G V E E I T S G K T Y D I Q G E L T Q P E I E K I A K S I L C N D V I E .............................................................................................................................................. ................................................................................................ P K G N G V C H D I Q D L G I T S V S E V R V I D V Y W L E G N L S D S E V L T I S G E L L S D Q I I Q T F K Y D A N C P L A E A D G F S A I E V T Y N A G V T D P V Q E T I L K A I S D L G I K G I T A A R T A K R Y L L K G E I S A D E L K T I G N K L L I N P I V Q .............................................................................................................................................. Subject: UniRef90_A0W4J4 Cluster: Phosphoribosylformylglycinamidine synthase II; n=1; Geobacter lovleyi SZ|Rep: Phosphoribosylformylglycinamidine synthase II - Geobacter lovleyi SZ HSP 1 e-value: 8.0E-9 bit: 62.8 Len: 378 Query Start:85 Query End:462 Subject Strand: null Subject Start: 27 Subject End: 152 .................................................................................... H V L G F K A V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L Y E - Y S - - - - Q T E G F I I E D K K N I F H I E T A L K P G V T D S S S R E A L R A V K E L - - - G I L G V E E I T S G K T Y D I Q G E L T Q P E I E K I A K S I L C N D V I E Q Y K I ............................................................................................................................................................................ .................................................................................... H F L H L K - V K Q V R T I D V Y T V D A A L T R E E L E A A A S G P F C D P V I Q S Y S V D L P Q A S G F D - - - - - - - W A V E V G F R P G V T D N I G R T A G E A V S Y L I Q R P L A D S E A V Y S S V Q Y L L T G D L S N E Q V E K I A T G L L C N T L I Q R Y S I ............................................................................................................................................................................ Subject: UniRef90_Q2LPP3 Cluster: Phosphoribosylformylglycinamidine synthase; n=1; Syntrophus aciditrophicus SB|Rep: Phosphoribosylformylglycinamidine synthase - Syntrophus aciditrophicus (strain SB) HSP 1 e-value: 2.0E-6 bit: 55.1 Len: 360 Query Start:85 Query End:444 Subject Strand: null Subject Start: 32 Subject End: 152 .................................................................................... A V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L - - - Y E Y S Q T E G F I I E D K K N I F H I E T A L K P G V T D S S S R - - - E A L R A V K E L G I L G V E E I T S G K T Y D I Q G E L T Q P E I E K I A K S I L C N D V I E Q Y K I .............................................................................................................................................................................................. .................................................................................... S V E N V E T I E V Y T L E G D L T D E L L E R I A A G P F S D P V I Q R Y A V N R S L A F D F D - - - - - W L I E V G F R P G V T D N V G R T A T E A V R L L L E K A A N G G L K V Y T S R Q Y L L K G K L T R R E V E D I A S G L L A N E L I Q R F E I .............................................................................................................................................................................................. Subject: UniRef90_Q2DJG5 Cluster: Phosphoribosylformylglycinamidine synthase II; n=1; Geobacter uraniumreducens Rf4|Rep: Phosphoribosylformylglycinamidine synthase II - Geobacter uraniumreducens Rf4 HSP 1 e-value: 5.0E-6 bit: 53.5 Len: 357 Query Start:85 Query End:441 Subject Strand: null Subject Start: 33 Subject End: 152 .................................................................................... V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L Y E Y S Q T E G F I I E D K K N I F H I E T A L K P G V T D S - - - S S R E A L R A V K E L G I L G V E E I T S G K T Y D I Q G E L T Q P E I E K I A K S I L C N D V I E Q Y K I ................................................................................................................................................................................................. .................................................................................... V N R V R S I D V F T V D A E L S V A E L E M A A A G P F C D P V I Q A F S I D S P V A R D F D Y L - - V E V G F R P G V T D N V G R T A R E A I E Y I T G R P F Q A G E G V Y T S V Q Y L F S G S L T P A D M E K I A T G L L C N T L I Q R Y Q V ................................................................................................................................................................................................. Subject: UniRef90_Q0W8Z1 Cluster: Putative phosphoribosylformylglycinamidine synthase, synthetase domain; n=1; uncultured methanogenic archaeon RC-I|Rep: Putative phosphoribosylformylglycinamidine synthase, synthetase domain - Uncultured methanogenic archaeon RC-I HSP 1 e-value: 7.0E-6 bit: 53.1 Len: 360 Query Start:85 Query End:444 Subject Strand: null Subject Start: 32 Subject End: 152 .................................................................................... A V K E I N T E T L Y F V R G N L S N E E K K V L A D F L F C D E L Y E Y S Q T E G F I I E D K K N I F H I E T A L K P G V T D S S S R E A L R A V K E - L G - I L G V E E - I T S G K T Y D I Q G E L T Q P E I E K I A K S I L C N D V I E Q Y K I .............................................................................................................................................................................................. .................................................................................... A V D D I R T I K V F T I N A N L T D A E K E A V A S G P F S D A V A Q R Y S V D R P L A S D F D W L - - V E V G Y L P G V T D N E G K T G R E A I E D R L G R K L G A D E S V H T S T Q Y L I N G N L T R A Q V E T I C R Q L L G N E L I E R F D V .............................................................................................................................................................................................. ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Predict ORF larger than 30AA ================================================ Protein_Len: 41 Strand: + Start: 31 End: 153 .............................. M R F I F S V M F M S P C R F Y K A Y F I L L Y N I I A Q N A F C N L F Y F G L G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 185 End: 340 ........................................................................................................................................................................................ M V I S S T P R I P S S L T A L K A S R E D E S V T P G F K A V S I W K I F F L S S I I K P S V W L Y S ...................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 286 End: 390 ............................................................................................................................................................................................................................................................................................. M E N I F F I F Y Y K A F G L A V L I K L I A K Q E V G Q Y L F F F I .................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 541 End: 633 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M H R Q P L N F R W I L N D S I L L S I L E A G E K F K V G V . Protein_Len: 38 Strand: - Start: 315 End: 428 .......................................................................................................................................................................................................................................................................................................................... L A K P K A T S M F S M A F C S T P W Y R K K K M Q F I E A Y L I F H K P M .............................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 582 R V F Y L T E T N I E K V A K F G L V H A Q K L L E E N K P I Q F H L G K K S K V C F R Y I N M S L R K V E S P N Q V M .................................................... ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 595 End: 624 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAATTTTTCCCCCGCTTCAAGTATACT.......... PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 573 End: 602 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAACGATTCTATATTGTTAAGTATACT................................ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 286 End: 315 .............................................................................................................................................................................................................................................................................................ATGGAAAATATTTTTTTTATCTTCTATTAT............................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 389 End: 418 ....................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGATTTCCGCGTACAAAATAAAGT........................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 48 HP_score: -2.3 Tail_Score: -3.66908 Start: 498 End: 514 Full_Region: CATTTTTGGGTATTT GAAAG TGTAAGC CTTTC TTGCTTTTAACACAA .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGTAAGCCTTTC........................................................................................................................ TransTerm Strand: + Conf: 54 HP_score: -2.1 Tail_Score: -4.07885 Start: 504 End: 518 Full_Region: TGGGTATTTGAAAGT GTAAG CCTTT CTTGC TTTTAACACAAAATC .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCCTTTCTTGC.................................................................................................................... Find igs database================================================ Query_seq: TDE1279:TDE1280|TDE1279:TDE1280:phosphoribosylformylglycinamidine synthase II:hypothetical protein:<-<-:1315206..1315839 634 ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg Intra-Species Hit: Count: 1 Min: 1 Max: 634 Len: 634 Subject: NC_002967_TDE1279_TDE1280|phosphoribosylformylglycinamidine synthase II:hypothetical protein|NEGATIVE:NEGATIVE|[1315206,1315839]|634 HSP 1 e-value: 1.0E-74 bit: 281.0 Len: 142 Query Start:493 Query End:634 Subject Strand: POSITIVE Subject Start: 493 Subject End: 634 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatttgaaagtgtaagcctttcttgcttttaacacaaaatcggtaaatattcatagacaacctcttaacttccgatggattttgaacgattctatattgttaagtatacttgaagcgggggaaaaattcaaggtaggggtgg HSP 2 e-value: 6.0E-40 bit: 167.0 Len: 84 Query Start:1 Query End:84 Subject Strand: POSITIVE Subject Start: 1 Subject End: 84 ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ggaggctatgtctatgagttcaactcttgtattaggttcattttttccgtcatgttcatgagcccatgcaggttctacaaagcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGAGGCUAUGUCUAUGAGUUCAACUCUUGUAUUAGGUUCAUUUUUUCCGUCAUGUUCAUGAGCCCAUGCAGGUUCUACAAAGCCUAUUUUAUACUGCUCUAUAACAUCAUUGCACAAAAUGCUUUUUGCAAUCUUUUCUAUUUCGGGUUGGGUUAGUUCGCCCUGAAUAUCGUAGGUUUUUCCGCUGGUAAUUUCUUCAACGCCGAGAAUACCGAGUUCUUUGACCGCCCUUAAGGCUUCGCGUGAAGAUGAGUCCGUAACUCCCGGCUUUAAGGCUGUUUCGAUAUGGAAAAUAUUUUUUUUAUCUUCUAUUAUAAAGCCUUCGGUUUGGCUGUACUCAUAAAGCUCAUCGCAAAACAAGAAGUCGGCCAGUACCUUUUUUUCUUCAUUUGAAAGAUUUCCGCGUACAAAAUAAAGUGUUUCGGUAUUUAUUUCUUUAACGGCUUUAAAGCCGAGAACAUGGGCCUGCUUUAAAAGCUCUUCAUUUUUGGGUAUUUGAAAGUGUAAGCCUUUCUUGCUUUUAACACAAAAUCGGUAAAUAUUCAUAGACAACCUCUUAACUUCCGAUGGAUUUUGAACGAUUCUAUAUUGUUAAGUAUACUUGAAGCGGGGGAAAAAUUCAAGGUAGGGGUGG (((((...(((((((((((......(((((((..(((((((................))))))).)))))))......(((((((((..(((...((((.(((.....((((((.(((....))).))))))......)))...)))).((((......))))...)))..)))))))))...((((((....((((((.(((.((((((.....)))))).....(((.....)))...)))))))))...((((((...((.((((((((((((((((..(((((.((((.((((((.(((.....................((((((((((.((((.....((.....)).......).)))))))))).)))..((((((.......))))))............))).)))))))))).))))).........)))))))))))))))).))..)))))).((..((((((((.(((((((((..(....)..)))))).)))........))))))))..))..))))))....))))))))))).)))))...(((((..((((((((...((.(((((((((....))))))...))).)).....)))))))).)).)))..... (-154.79) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CCACCCCUACCUUGAAUUUUUCCCCCGCUUCAAGUAUACUUAACAAUAUAGAAUCGUUCAAAAUCCAUCGGAAGUUAAGAGGUUGUCUAUGAAUAUUUACCGAUUUUGUGUUAAAAGCAAGAAAGGCUUACACUUUCAAAUACCCAAAAAUGAAGAGCUUUUAAAGCAGGCCCAUGUUCUCGGCUUUAAAGCCGUUAAAGAAAUAAAUACCGAAACACUUUAUUUUGUACGCGGAAAUCUUUCAAAUGAAGAAAAAAAGGUACUGGCCGACUUCUUGUUUUGCGAUGAGCUUUAUGAGUACAGCCAAACCGAAGGCUUUAUAAUAGAAGAUAAAAAAAAUAUUUUCCAUAUCGAAACAGCCUUAAAGCCGGGAGUUACGGACUCAUCUUCACGCGAAGCCUUAAGGGCGGUCAAAGAACUCGGUAUUCUCGGCGUUGAAGAAAUUACCAGCGGAAAAACCUACGAUAUUCAGGGCGAACUAACCCAACCCGAAAUAGAAAAGAUUGCAAAAAGCAUUUUGUGCAAUGAUGUUAUAGAGCAGUAUAAAAUAGGCUUUGUAGAACCUGCAUGGGCUCAUGAACAUGACGGAAAAAAUGAACCUAAUACAAGAGUUGAACUCAUAGACAUAGCCUCC ...........((((((..(((.........(((....))).........)))..))))))..(((...)))......((((((((((((((.......(((....(((.((((((((..(((((.......))))).......((....))....)))))))).))).((((((((((((((((((((.((.(((...((........(((..(((........)))...)))..((((((...((((((.......(((..((((.(....((..(...((.....))...)..))..).)))).))).....))))))....))))))...................))..))).)).))))))))))))...................((((((((......((((((.........(((.((.((.((....((....))....)).)).))))).....((((..(((.............)))..)))).....)))))).......(((((((((.....((((....))))))))))))).)))))))).......))))))))............)))......(.(((((......)).))).)..)))))))))..))))). (-143.89) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 911 100 51 191 142 NC_002967:TDE1279|5end_phosphoribosylformylglycinamidine_synthase_II_1315115..1315345_NEGATIVE 410 190 145 58 1 NC_002967:TDE2637|5end_hypothetical_protein_2677316..2677546_NEGATIVE 379 259 214 49 5 NC_002967:TDE2571|5end_hypothetical_protein_2598152..2598382_NEGATIVE 359 289 242 230 181 NC_002967:TDE1996|5end_hypothetical_protein_2014243..2014473_POSITIVE 347 246 202 67 24 NC_002967:TDE0389|5end_(R)-2-hydroxyglutaryl-CoA_dehydratase,_beta_subunit,_putative_440008..440238_POSITIVE 343 479 436 182 134 NC_002967:TDE2069|5end_endoribonuclease_L-PSP,_putative_2096632..2096862_POSITIVE 343 239 193 172 120 NC_002967:TDE0625|5end_ABC_transporter,_ATP-binding_protein_657253..657483_POSITIVE 342 269 221 222 167 NC_002967:TDE2311|5end_hypothetical_protein_2348238..2348468_POSITIVE 337 229 183 100 42 NC_002967:TDE1006|5end_flagellar_basal-body_rod_protein_FlgG_1030427..1030657_POSITIVE 337 258 213 226 174 NC_002967:TDE0957|5end_glycerophosphoryl_diester_phosphodiesterase_family_protein_980252..980482_POSITIVE 334 248 201 168 112 NC_002967:TDE2491|5end_DNA_polymerase_domain_protein_2515499..2515729_NEGATIVE 334 249 201 95 49 NC_002967:TDE2209|5end_CarB_family_protein_2247589..2247819_POSITIVE 329 229 181 112 62 NC_002967:TDE2751|5end_hypothetical_protein_2807570..2807800_POSITIVE 329 259 212 70 24 NC_002967:TDE2736|5end_hypothetical_protein_2791812..2792042_NEGATIVE 329 70 24 43 1 NC_002967:TDE2465|5end_hypothetical_protein_2489651..2489881_NEGATIVE 329 190 141 184 145 NC_002967:TDE0618|5end_hypothetical_protein_650355..650585_NEGATIVE 329 260 212 72 18 NC_002967:TDE0239|5end_glycine_reductase_complex_protein_GrdD_272982..273212_NEGATIVE 327 473 440 51 15 NC_002967:TDE1090|5end_threonyl-tRNA_synthetase_1121106..1121336_POSITIVE 322 360 319 78 24 NC_002967:TDE1629|5end_dihydrolipoamide_dehydrogenase_1678514..1678744_NEGATIVE 322 243 201 227 181 NC_002967:TDE0909|5end_type_II_DNA_modification_methyltransferase_M.TdeIII_927166..927396_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 395 259 211 56 4 NC_002967:TDE2572|3end_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase_2598145..2598295_NEGATIVE 373 269 221 87 27 NC_002967:TDE2642|3end_hypothetical_protein_2682111..2682261_NEGATIVE 359 289 242 151 102 NC_002967:TDE1995|3end_magnesium_chelatase_family_protein_2014244..2014394_POSITIVE 345 247 222 148 119 NC_002967:TDE2258|3end_surface_antigen_BspA,_putative_2295334..2295484_NEGATIVE 344 229 181 72 19 NC_002967:TDE2312|3end_hypothetical_protein_2349049..2349199_POSITIVE 343 479 436 65 17 NC_002967:TDE2068|3end_antigen,_putative_2096595..2096745_POSITIVE 342 269 225 136 99 NC_002967:TDE1850|3end_ABC_transporter,_permease_protein,_putative_1878227..1878377_NEGATIVE 337 185 144 41 3 NC_002967:TDE2543|3end_hypothetical_protein_2570753..2570903_NEGATIVE 337 229 183 88 30 NC_002967:TDE1005|3end_hypothetical_protein_1030495..1030645_POSITIVE 334 230 189 143 96 NC_002967:TDE0608|3end_DNA-binding_protein,_putative_644994..645144_NEGATIVE 329 70 24 43 1 NC_002967:TDE2466|3end_hypothetical_protein_2489651..2489801_NEGATIVE 329 260 212 59 5 NC_002967:TDE0240|3end_glycine_reductase_complex_protein_GrdC_272995..273145_NEGATIVE 326 236 202 148 107 NC_002967:TDE1387|3end_RNA_pseudouridylate_synthase_family_protein_1426815..1426965_NEGATIVE 326 259 213 129 94 NC_002967:TDE0895|3end_transcriptional_regulator,_AraC_family_911227..911377_NEGATIVE 324 188 144 80 28 NC_002967:TDE1244|3end_TPR_domain_protein_1277879..1278029_POSITIVE 322 243 201 66 20 NC_002967:TDE0908|3end_ABC_transporter,_ATP-binding/permease_protein_927085..927235_POSITIVE 320 471 434 85 46 NC_002967:TDE0043|3end_TPR_domain_protein_51651..51801_POSITIVE 319 236 191 134 97 NC_002967:TDE2483|3end_hypothetical_protein_2505880..2506030_NEGATIVE 317 187 144 63 18 NC_002967:TDE2736|3end_hypothetical_protein_2791702..2791852_NEGATIVE 317 207 161 48 2 NC_002967:TDE2027|3end_hypothetical_protein_2052998..2053148_POSITIVE