Origin IGS: tttgtatcctctttagattcattgcctgttttaaacattttaagcattctgtccgtaagaccgaagcctgcaactacgtttattgttgcacaaatgatgcctatacagccgaaaatcttgctgcctgttgtaactgcatatgccgtagcggtcattgtagccaaaatagtaatgccggataaggcattcatacccgacataagaggggtatgcaaaagacttggtacattcttgatcagtttgtagcctataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacgatttcaccgtcaatagtggtaagaatacctttgacaatgtcatcatttcggtcaagctcgatttttccgtccttgataagatagcgggtaaggttgcaaatattttgagcaaacatccatgtagagcttgagggaagaagtccggggatgtttttaatacctacaaggtgaacattgtgctttttgacaacttcgcccggaggtgttaactcacagtttccgccttggtcgattgaaatatcaacgattaccgagccgggtttcatggtctttaccatttcttcggtgattataaccggagcgagttttcccggaacaagggccgaaaggaagattatgtccatatccttaatatgaggagcaagcagctttctttcgttttcgagggtctctttttttagatgaagggcgtagccgccctctccgatggcctcattttcgggaacgcctaagtcgataatctttgcaccaagggactgagcctgttcacgggctgcaggccggatatcggctgcataggttactgctccaagtcttttggcagttgcgagagcctgtaagcctcctacacctgttccgactactaagacattcataggtttaatcatacctacggcacagaaaatttgagggataaatcgcggcaagagatttgcagcaattaatattcctttataacctgcacaggtactcatcgaagtaagagcatccatgttttgtgctcttgaaattcgaggaactccgtcgagggttaaagaaataacgcctttttttgccatatttttaaccatttcgtggttaaccggagctgcagggtgaataaaagtgataagatactgtcctttgtgcatcatatctatttcgtggcagcccattgcatcattataaaggggttcttttacctttaaaattatttccgaatcggaaaaaagctttttaacatcggaaactatttccgctccggccttttcatattccggatcatggaaataggcgccttcaccggcccctttttccactaaaaccttgtgtccgtccttaaccaaaagctcgcatgtttccggagtagcggcaacacggtcttctccatgcatgatttccttaggaataccaataatcataaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttttttctcctatgaacgtcattttatcacaattaaaaaaaatatataagagcttaaaataaattagatgtaaacaaatttcaggaaaccacaacactaaaaccgaaccttgacggcaatgtcttactatgatataatcgattgaaattaagagttcagtatggctatataaaagctgtgctttataggaggattttatgattattggtattcctaaggaaatcatgcatggagaagaccgtgttgccgctactccggaaacatgcgagcttttggttaaggacggacacaaggttttagtggaaaaaggggccggtgaaggcgcctatttccatgatccggaatatgaaaaggccggagcggaaatagtttccgatgttaaaaagcttttttccgattcggaaataattttaaaggtaaaagaacccctttataatgatgcaatgggctgccacgaaatagatatgatgcacaaaggacagtatcttatcacttttattcaccctgcagctccggttaaccacgaaatggttaaaaatatggcaaaaaaaggcgttatttctttaaccctcgacggagttcctcgaatttcaagagcacaaaacatggatgctcttacttcgatgagtacctgtgcaggttataaaggaatattaattgctgcaaatctcttgccgcgatttatccctcaaattttctgtgccgtaggtatgattaaacctatgaatgtcttagtagtcggaacaggtgtaggaggcttacaggctctcgcaactgccaaaagacttggagcagtaacctatgcagccgatatccggcctgcagcccgtgaacaggctcagtcccttggtgcaaagattatcgacttaggcgttcccgaaaatgaggccatcggagagggcggctacgcccttcatctaaaaaaagagaccctcgaaaacgaaagaaagctgcttgctcctcatattaaggatatggacataatcttcctttcggcccttgttccgggaaaactcgctccggttataatcaccgaagaaatggtaaagaccatgaaacccggctcggtaatcgttgatatttcaatcgaccaaggcggaaactgtgagttaacacctccgggcgaagttgtcaaaaagcacaatgttcaccttgtaggtattaaaaacatccccggacttcttccctcaagctctacatggatgtttgctcaaaatatttgcaaccttacccgctatcttatcaaggacggaaaaatcgagcttgaccgaaatgatgacattgtcaaaggtattcttaccactattgacggtgaaatcgttcataagggagccagggaggcaatgggcatatgagtctggaattgatactggttcttgtctttgttgtaacgacccttataggctacaaactgatcaagaatgtaccaagtcttttgcatacccctcttatgtcgggtatgaatgccttatccggcattactattttggctacaatgaccgctacggcatatgcagttacaacaggcagcaagattttcggctgtataggcatcatttgtgcaacaataaacgtagttgcaggcttcggtcttacggacagaatgcttaaaatgtttaaaacaggcaatgaatctaaagaggatacaaa Mask Tandem Repeat Region ================================================ tttgtatcctctttagattcattgcctgttttaaacattttaagcattctgtccgtaagaccgaagcctgcaactacgtttattgttgcacaaatgatgcctatacagccgaaaatcttgctgcctgttgtaactgcatatgccgtagcggtcattgtagccaaaatagtaatgccggataaggcattcatacccgacataagaggggtatgcaaaagacttggtacattcttgatcagtttgtagcctataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacgatttcaccgtcaatagtggtaagaatacctttgacaatgtcatcatttcggtcaagctcgatttttccgtccttgataagatagcgggtaaggttgcaaatattttgagcaaacatccatgtagagcttgagggaagaagtccggggatgtttttaatacctacaaggtgaacattgtgctttttgacaacttcgcccggaggtgttaactcacagtttccgccttggtcgattgaaatatcaacgattaccgagccgggtttcatggtctttaccatttcttcggtgattataaccggagcgagttttcccggaacaagggccgaaaggaagattatgtccatatccttaatatgaggagcaagcagctttctttcgttttcgagggtctctttttttagatgaagggcgtagccgccctctccgatggcctcattttcgggaacgcctaagtcgataatctttgcaccaagggactgagcctgttcacgggctgcaggccggatatcggctgcataggttactgctccaagtcttttggcagttgcgagagcctgtaagcctcctacacctgttccgactactaagacattcataggtttaatcatacctacggcacagaaaatttgagggataaatcgcggcaagagatttgcagcaattaatattcctttataacctgcacaggtactcatcgaagtaagagcatccatgttttgtgctcttgaaattcgaggaactccgtcgagggttaaagaaataacgcctttttttgccatatttttaaccatttcgtggttaaccggagctgcagggtgaataaaagtgataagatactgtcctttgtgcatcatatctatttcgtggcagcccattgcatcattataaaggggttcttttacctttaaaattatttccgaatcggaaaaaagctttttaacatcggaaactatttccgctccggccttttcatattccggatcatggaaataggcgccttcaccggcccctttttccactaaaaccttgtgtccgtccttaaccaaaagctcgcatgtttccggagtagcggcaacacggtcttctccatgcatgatttccttaggaataccaataatcataaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Find is-nt database================================================ Query_seq: TDE1188:TDE1190|TDE1188:TDE1190:NAD(P) transhydrogenase, beta subunit:hypothetical protein:<-->:1216713..1218362 1650 tttgtatcctctttagattcattgcctgttttaaacattttaagcattctgtccgtaagaccgaagcctgcaactacgtttattgttgcacaaatgatgcctatacagccgaaaatcttgctgcctgttgtaactgcatatgccgtagcggtcattgtagccaaaatagtaatgccggataaggcattcatacccgacataagaggggtatgcaaaagacttggtacattcttgatcagtttgtagcctataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacgatttcaccgtcaatagtggtaagaatacctttgacaatgtcatcatttcggtcaagctcgatttttccgtccttgataagatagcgggtaaggttgcaaatattttgagcaaacatccatgtagagcttgagggaagaagtccggggatgtttttaatacctacaaggtgaacattgtgctttttgacaacttcgcccggaggtgttaactcacagtttccgccttggtcgattgaaatatcaacgattaccgagccgggtttcatggtctttaccatttcttcggtgattataaccggagcgagttttcccggaacaagggccgaaaggaagattatgtccatatccttaatatgaggagcaagcagctttctttcgttttcgagggtctctttttttagatgaagggcgtagccgccctctccgatggcctcattttcgggaacgcctaagtcgataatctttgcaccaagggactgagcctgttcacgggctgcaggccggatatcggctgcataggttactgctccaagtcttttggcagttgcgagagcctgtaagcctcctacacctgttccgactactaagacattcataggtttaatcatacctacggcacagaaaatttgagggataaatcgcggcaagagatttgcagcaattaatattcctttataacctgcacaggtactcatcgaagtaagagcatccatgttttgtgctcttgaaattcgaggaactccgtcgagggttaaagaaataacgcctttttttgccatatttttaaccatttcgtggttaaccggagctgcagggtgaataaaagtgataagatactgtcctttgtgcatcatatctatttcgtggcagcccattgcatcattataaaggggttcttttacctttaaaattatttccgaatcggaaaaaagctttttaacatcggaaactatttccgctccggccttttcatattccggatcatggaaataggcgccttcaccggcccctttttccactaaaaccttgtgtccgtccttaaccaaaagctcgcatgtttccggagtagcggcaacacggtcttctccatgcatgatttccttaggaataccaataatcataaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE1188:TDE1190|TDE1188:TDE1190:NAD(P) transhydrogenase, beta subunit:hypothetical protein:<-->:1216713..1218362 1650 tttgtatcctctttagattcattgcctgttttaaacattttaagcattctgtccgtaagaccgaagcctgcaactacgtttattgttgcacaaatgatgcctatacagccgaaaatcttgctgcctgttgtaactgcatatgccgtagcggtcattgtagccaaaatagtaatgccggataaggcattcatacccgacataagaggggtatgcaaaagacttggtacattcttgatcagtttgtagcctataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacgatttcaccgtcaatagtggtaagaatacctttgacaatgtcatcatttcggtcaagctcgatttttccgtccttgataagatagcgggtaaggttgcaaatattttgagcaaacatccatgtagagcttgagggaagaagtccggggatgtttttaatacctacaaggtgaacattgtgctttttgacaacttcgcccggaggtgttaactcacagtttccgccttggtcgattgaaatatcaacgattaccgagccgggtttcatggtctttaccatttcttcggtgattataaccggagcgagttttcccggaacaagggccgaaaggaagattatgtccatatccttaatatgaggagcaagcagctttctttcgttttcgagggtctctttttttagatgaagggcgtagccgccctctccgatggcctcattttcgggaacgcctaagtcgataatctttgcaccaagggactgagcctgttcacgggctgcaggccggatatcggctgcataggttactgctccaagtcttttggcagttgcgagagcctgtaagcctcctacacctgttccgactactaagacattcataggtttaatcatacctacggcacagaaaatttgagggataaatcgcggcaagagatttgcagcaattaatattcctttataacctgcacaggtactcatcgaagtaagagcatccatgttttgtgctcttgaaattcgaggaactccgtcgagggttaaagaaataacgcctttttttgccatatttttaaccatttcgtggttaaccggagctgcagggtgaataaaagtgataagatactgtcctttgtgcatcatatctatttcgtggcagcccattgcatcattataaaggggttcttttacctttaaaattatttccgaatcggaaaaaagctttttaacatcggaaactatttccgctccggccttttcatattccggatcatggaaataggcgccttcaccggcccctttttccactaaaaccttgtgtccgtccttaaccaaaagctcgcatgtttccggagtagcggcaacacggtcttctccatgcatgatttccttaggaataccaataatcataaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 30 Max: 1453 Len: 1424 Subject: gi|89108444|ref|AP_002224.1| pyridine nucleotide transhydrogenase, alpha subunit [Escherichia coli W3110] HSP 1 e-value: 6.0E-69 bit: 258.0 Len: 1122 Query Start:332 Query End:1453 Subject Strand: null Subject Start: 1 Subject End: 366 ........................................................................................................................................................................................................................................................................................................................................... M I I G I P K E I M H G E D R V A A T P E T C E L L V K D G H K V L V E K G A G E G A Y F H D P E Y E K A G A E I V S D V K K L F S D S E I I L K V K E P L Y N D A M G C H E I D M M H K G Q Y L I T F I H P A A P V N H E M V K N M A K K G V I S L T L D G V P R I S R A Q N M D A L T S M S T C A G Y K G I L I A A N L L P R F I P Q I F C A V G M I K P M N X X X X X X X X X X X X X X X X A K R L G A V T Y A A D I R P A A R E Q A Q S L G A K I I D L G V P E N E A I G E G G Y A L H L K K E T L E N E R K L L A P H I K D M D I I F L S A L V P G K L A P V I I T E E M V K T M K P G S V I V D I S I D Q G G N C E L T P P G E V V K K H N - V H L V G I K N I P G L L P S S S T W M F A Q N I C N L T R Y L I - - K D G K I E L D R N D D I V K G I L T T I D G E I ..................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................... M R I G I P R E R L T N E T R V A A T P K T V E Q L L K L G F T V A V E S G A G Q L A S F D D K A F V Q A G A E I V E G - - N S V W Q S E I I L K V N A P L D D - - - - - - E I A L L N P G T T L V S F I W P A Q - - N P E L M Q K L A E R N V T V M A M D S V P R I S R A Q S L D A L S S M A N I A G Y R A I V E A A H E F G R F F T G Q I T A A G K V P P A K V M V I G A G V A G L A A I G A A N S L G A I V R A F D T R P E V K E Q V Q S M G A E F L E L D F K E E A G S G D G - Y A K V M S D A F I K A E M E L F A A Q A K E V D I I V T T A L I P G K P A P K L I T R E M V D S M K A G S V I V D L A A Q N G G N C E Y T V P G E I F T T E N G V K V I G Y T D L P G R L P T Q S S Q L Y G T N L V N L L K L L C K E K D G N I T V D F D D V V I R G V T V I R A G E I ..................................................................................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 54.3 Len: 219 Query Start:30 Query End:248 Subject Strand: null Subject Start: 438 Subject End: 508 ............................. G Y K L I K N V P S L L H T P L M S G M N A L S G I T I L X X X X X X X X X X X T G S K I F G C I G I I C A T I N V V A G F G L T D R M L K M F K .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................. G Y Y V V W N V S H A L H T P L M S V T N A I S G I I V V G A L L Q I G Q G G W V S F L S F - - I A V L I A S I N I F G G F T V T Q R M L K M F R .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: TDE1188:TDE1190|TDE1188:TDE1190:NAD(P) transhydrogenase, beta subunit:hypothetical protein:<-->:1216713..1218362 1650 tttgtatcctctttagattcattgcctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttgtatcctctttagattcattgcctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Predict ORF larger than 30AA ================================================ Protein_Len: 58 Strand: + Start: 6 End: 179 ..... M L F R F I A C F K H F K H S V R K T E A C N Y V Y C C T N D A Y T A E N L A A C C N C I C R S G H C S Q N S N A G ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 22 End: 243 ..................... M P V L N I L S I L S V R P K P A T T F I V A Q M M P I Q P K I L L P V V T A Y A V A V I V A K I V M P D K A F I P D I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 186 End: 326 ......................................................................................................................................................................................... M H T R H K R G M Q K T W Y I L D Q F V A Y K G R Y N K D K N Q Y Q F Q T H M P I A S L A P L ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 250 End: 345 ......................................................................................................................................................................................................................................................... M R V V T T K T R T S I N S R L I C P L P P W L P Y E R F H R Q ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: + Start: 287 End: 460 .............................................................................................................................................................................................................................................................................................. M P D S Y A H C L P G S L M N D F T V N S G K N T F D N V I I S V K L D F S V L D K I A G K V A N I L S K H P C R A ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 507 End: 686 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M C F L T T S P G G V N S Q F P P W S I E I S T I T E P G F M V F T I S S V I I T G A S F P G T R A E R K I M S I S L I .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 572 End: 730 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N D Y R A G F H G L Y H F F G D Y N R S E F S R N K G R K E D Y V H I L N M R S K Q L S F V F E G L F F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: + Start: 796 End: 927 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M H Q G T E P V H G L Q A G Y R L H R L L L Q V F W Q L R E P V S L L H L F R L L R H S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 870 End: 959 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A V A R A C K P P T P V P T T K T F I G L I I P T A Q K I ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 1026 End: 1148 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E V R A S M F C A L E I R G T P S R V K E I T P F F A I F L T I S W L T G A A G ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 1112 End: 1237 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F N H F V V N R S C R V N K S D K I L S F V H H I Y F V A A H C I I I K G F F Y L ............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 1253 End: 1351 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G K K L F N I G N Y F R S G L F I F R I M E I G A F T G P F F H ........................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 1361 End: 1465 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M S V L N Q K L A C F R S S G N T V F S M H D F L R N T N N H K I L L ......................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 1359 End: 1649 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M C P S L T K S S H V S G V A A T R S S P C M I S L G I P I I I K S S Y K A Q L L Y S H T E L L I S I D Y I I V R H C R . Protein_Len: 31 Strand: - Start: 1354 End: 1446 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R T D T R L W F S A H K R L L P L V T K E M C S K R L F V M ............................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 299 End: 1453 .......................................................................................................................................................................................................................................................................................................... D S V I E A G A K E Y E P D H F Y A G E G A G K E V L V K H G D K V L L E C T E P T A A V R D E G H M I E K P I G I I M ..................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 43 End: 444 .......................................... C L C S G T D I G S E Y A W Q R G P E R I F S K V T L L P L F V K S L T M M E T L S S K E T R S L I A P L T A F I K L M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 3 End: 299 .. S G T T V A Y A T A T M T A L I T I G S L A N M G S M L P T H L L S P V N K I L K Y G I L T T V V F V L V L I L E L S M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttgtatcctctttagattcattgcctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 87 Start: 1513 End: 1542 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACGGCAATGTCTTACTATGATATAAT............................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 1576 End: 1605 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACATCTAATTTATTTTAAGCTCTTAT............................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 82 Start: 973 End: 989 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAAGAGATTTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttgtatcctctttagattcattgcctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 74 HP_score: -9.5 Tail_Score: -3.25823 Start: 739 End: 752 Full_Region: tgaggccatcggaga gggcg gcta cgccc ttcatctaaaaaaag ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gggcggctacgccc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 59 HP_score: -4.1 Tail_Score: -3.92641 Start: 971 End: 993 Full_Region: ataaaggaatattaa ttgctgcaa atctc ttgccgcga tttatccctcaaatt ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgctgcaaatctcttgccgcga................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 71 HP_score: -6.9 Tail_Score: -4.11216 Start: 1243 End: 1263 Full_Region: ccgatgttaaaaagc ttttttccg att cggaaataa ttttaaaggtaaaag ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttttccgattcggaaataa................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TDE1188:TDE1190|TDE1188:TDE1190:NAD(P) transhydrogenase, beta subunit:hypothetical protein:<-->:1216713..1218362 1650 tttgtatcctctttagattcattgcctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa Intra-Species Hit: Count: 1 Min: 1 Max: 1650 Len: 1650 Subject: NC_002967_TDE1188_TDE1190|NAD(P) transhydrogenase, beta subunit:hypothetical protein|NEGATIVE:POSITIVE|[1216713,1218362]|1650 HSP 1 e-value: 1.0E-92 bit: 343.0 Len: 197 Query Start:1454 Query End:1650 Subject Strand: POSITIVE Subject Start: 1454 Subject End: 1650 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatannnnnnnnaattgtgataaaatgacgttcataggagaaaaaa .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaatcctcctataaagcacagcttttatatagccatactgaactcttaatttcaatcgattatatcatagtaagacattgccgtcaaggttcggttttagtgttgtggtttcctgaaatttgtttacatctaatttattttaagctcttatatattttttttaattgtgataaaatgacgttcataggagaaaaaa HSP 2 e-value: 6.0E-39 bit: 165.0 Len: 83 Query Start:249 Query End:331 Subject Strand: POSITIVE Subject Start: 249 Subject End: 331 ........................................................................................................................................................................................................................................................tataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................tataagggtcgttacaacaaagacaagaaccagtatcaattccagactcatatgcccattgcctccctggctcccttatgaac....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 1.0E-6 bit: 58.0 Len: 29 Query Start:1 Query End:29 Subject Strand: POSITIVE Subject Start: 1 Subject End: 29 tttgtatcctctttagattcattgcctgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tttgtatcctctttagattcattgcctgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUAUCCUCUUUAGAUUCAUUGCCUGUUUUAAACAUUUUAAGCAUUCUGUCCGUAAGACCGAAGCCUGCAACUACGUUUAUUGUUGCACAAAUGAUGCCUAUACAGCCGAAAAUCUUGCUGCCUGUUGUAACUGCAUAUGCCGUAGCGGUCAUUGUAGCCAAAAUAGUAAUGCCGGAUAAGGCAUUCAUACCCGACAUAAGAGGGGUAUGCAAAAGACUUGGUACAUUCUUGAUCAGUUUGUAGCCUAUAAGGGUCGUUACAACAAAGACAAGAACCAGUAUCAAUUCCAGACUCAUAUGCCCAUUGCCUCCCUGGCUCCCUUAUGAACGAUUUCACCGUCAAUAGUGGUAAGAAUACCUUUGACAAUGUCAUCAUUUCGGUCAAGCUCGAUUUUUCCGUCCUUGAUAAGAUAGCGGGUAAGGUUGCAAAUAUUUUGAGCAAACAUCCAUGUAGAGCUUGAGGGAAGAAGUCCGGGGAUGUUUUUAAUACCUACAAGGUGAACAUUGUGCUUUUUGACAACUUCGCCCGGAGGUGUUAACUCACAGUUUCCGCCUUGGUCGAUUGAAAUAUCAACGAUUACCGAGCCGGGUUUCAUGGUCUUUACCAUUUCUUCGGUGAUUAUAACCGGAGCGAGUUUUCCCGGAACAAGGGCCGAAAGGAAGAUUAUGUCCAUAUCCUUAAUAUGAGGAGCAAGCAGCUUUCUUUCGUUUUCGAGGGUCUCUUUUUUUAGAUGAAGGGCGUAGCCGCCCUCUCCGAUGGCCUCAUUUUCGGGAACGCCUAAGUCGAUAAUCUUUGCACCAAGGGACUGAGCCUGUUCACGGGCUGCAGGCCGGAUAUCGGCUGCAUAGGUUACUGCUCCAAGUCUUUUGGCAGUUGCGAGAGCCUGUAAGCCUCCUACACCUGUUCCGACUACUAAGACAUUCAUAGGUUUAAUCAUACCUACGGCACAGAAAAUUUGAGGGAUAAAUCGCGGCAAGAGAUUUGCAGCAAUUAAUAUUCCUUUAUAACCUGCACAGGUACUCAUCGAAGUAAGAGCAUCCAUGUUUUGUGCUCUUGAAAUUCGAGGAACUCCGUCGAGGGUUAAAGAAAUAACGCCUUUUUUUGCCAUAUUUUUAACCAUUUCGUGGUUAACCGGAGCUGCAGGGUGAAUAAAAGUGAUAAGAUACUGUCCUUUGUGCAUCAUAUCUAUUUCGUGGCAGCCCAUUGCAUCAUUAUAAAGGGGUUCUUUUACCUUUAAAAUUAUUUCCGAAUCGGAAAAAAGCUUUUUAACAUCGGAAACUAUUUCCGCUCCGGCCUUUUCAUAUUCCGGAUCAUGGAAAUAGGCGCCUUCACCGGCCCCUUUUUCCACUAAAACCUUGUGUCCGUCCUUAACCAAAAGCUCGCAUGUUUCCGGAGUAGCGGCAACACGGUCUUCUCCAUGCAUGAUUUCCUUAGGAAUACCAAUAAUCAUAAAAUCCUCCUAUAAAGCACAGCUUUUAUAUAGCCAUACUGAACUCUUAAUUUCAAUCGAUUAUAUCAUAGUAAGACAUUGCCGUCAAGGUUCGGUUUUAGUGUUGUGGUUUCCUGAAAUUUGUUUACAUCUAAUUUAUUUUAAGCUCUUAUAUAUUUUUUUUAAUUGUGAUAAAAUGACGUUCAUAGGAGAAAAAA ..............(((((..(((.((((..((..((((....((.(((.(((.....))).))))).((((((..........)))))).....))))..)).)))).))).)))))....(((((((((..((((....((((.(((((...((((((((......(.((((((......))))))).((((((.((((((..(((((((.....((.(((((((.((((((.((...(((((((((....))))...)))))....))))))))...))))))).))........)))))))...(((.....)))...))))))...(((..((..(((((....((((....)))).)))))..))..)))......((((((..((.......))..)))))).......)))))).))))))))................((((((((((((((..(((((((.((((((.((((((((.(((.....(((((((...((((((....((((((.((((....)))).))))))..))))))...)))))))....)))))))))))...(((((((((...(((....(((((....))))).))))))))))))....))))).)...))))))).....((((..((((((((((....(((.....(((((.....)))))....))).)))))))))).....(((..(((((((.....((((..((((...(((((......((((((((((......)))...)))...))))........(((((.(((((((.....((..((((.(((((((((((......(((((((.((((..(((......)))..)))))))))))...).)))))).)))).....(((((((((((................(((((........))))).((((.(((((....(((((((((((.((.(((((...))))).)).)))..))))))))..((((((.....((...((.(((((.(((((((((.........)))))))))...))))).))...)).....)))))).............))))).))))......((((((((...)))))))).))))))....))))).......))))..)).....)))))))))))).............))))).))))....)))).....)))))))..)))...))))........((((((...)))))).)))))))...)))).)))........))))).))))..........((((((...((((((.(((.(((......))).))).))))))....(((..((((..(..............)..)))).)))))))))))))..)))))).))).(((((((((.(((......(((((((.((((((((((...........(((((((((...))))...)))))......((((........))))...))))))...(((.((((((...(((.....)))...)))))).)))..)))))))))))..................((((((((.((..(((...........)))..))..))))))))))).))).)))))).... (-469.46) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUUUCUCCUAUGAACGUCAUUUUAUCACAAUUAAAAAAAAUAUAUAAGAGCUUAAAAUAAAUUAGAUGUAAACAAAUUUCAGGAAACCACAACACUAAAACCGAACCUUGACGGCAAUGUCUUACUAUGAUAUAAUCGAUUGAAAUUAAGAGUUCAGUAUGGCUAUAUAAAAGCUGUGCUUUAUAGGAGGAUUUUAUGAUUAUUGGUAUUCCUAAGGAAAUCAUGCAUGGAGAAGACCGUGUUGCCGCUACUCCGGAAACAUGCGAGCUUUUGGUUAAGGACGGACACAAGGUUUUAGUGGAAAAAGGGGCCGGUGAAGGCGCCUAUUUCCAUGAUCCGGAAUAUGAAAAGGCCGGAGCGGAAAUAGUUUCCGAUGUUAAAAAGCUUUUUUCCGAUUCGGAAAUAAUUUUAAAGGUAAAAGAACCCCUUUAUAAUGAUGCAAUGGGCUGCCACGAAAUAGAUAUGAUGCACAAAGGACAGUAUCUUAUCACUUUUAUUCACCCUGCAGCUCCGGUUAACCACGAAAUGGUUAAAAAUAUGGCAAAAAAAGGCGUUAUUUCUUUAACCCUCGACGGAGUUCCUCGAAUUUCAAGAGCACAAAACAUGGAUGCUCUUACUUCGAUGAGUACCUGUGCAGGUUAUAAAGGAAUAUUAAUUGCUGCAAAUCUCUUGCCGCGAUUUAUCCCUCAAAUUUUCUGUGCCGUAGGUAUGAUUAAACCUAUGAAUGUCUUAGUAGUCGGAACAGGUGUAGGAGGCUUACAGGCUCUCGCAACUGCCAAAAGACUUGGAGCAGUAACCUAUGCAGCCGAUAUCCGGCCUGCAGCCCGUGAACAGGCUCAGUCCCUUGGUGCAAAGAUUAUCGACUUAGGCGUUCCCGAAAAUGAGGCCAUCGGAGAGGGCGGCUACGCCCUUCAUCUAAAAAAAGAGACCCUCGAAAACGAAAGAAAGCUGCUUGCUCCUCAUAUUAAGGAUAUGGACAUAAUCUUCCUUUCGGCCCUUGUUCCGGGAAAACUCGCUCCGGUUAUAAUCACCGAAGAAAUGGUAAAGACCAUGAAACCCGGCUCGGUAAUCGUUGAUAUUUCAAUCGACCAAGGCGGAAACUGUGAGUUAACACCUCCGGGCGAAGUUGUCAAAAAGCACAAUGUUCACCUUGUAGGUAUUAAAAACAUCCCCGGACUUCUUCCCUCAAGCUCUACAUGGAUGUUUGCUCAAAAUAUUUGCAACCUUACCCGCUAUCUUAUCAAGGACGGAAAAAUCGAGCUUGACCGAAAUGAUGACAUUGUCAAAGGUAUUCUUACCACUAUUGACGGUGAAAUCGUUCAUAAGGGAGCCAGGGAGGCAAUGGGCAUAUGAGUCUGGAAUUGAUACUGGUUCUUGUCUUUGUUGUAACGACCCUUAUAGGCUACAAACUGAUCAAGAAUGUACCAAGUCUUUUGCAUACCCCUCUUAUGUCGGGUAUGAAUGCCUUAUCCGGCAUUACUAUUUUGGCUACAAUGACCGCUACGGCAUAUGCAGUUACAACAGGCAGCAAGAUUUUCGGCUGUAUAGGCAUCAUUUGUGCAACAAUAAACGUAGUUGCAGGCUUCGGUCUUACGGACAGAAUGCUUAAAAUGUUUAAAACAGGCAAUGAAUCUAAAGAGGAUACAAA ....(((((((((...(((((((.((......((((((.........((((((((.............((....)).......((((((.....((((((((((...((((((((((((((((((.(((((..(((((((..(((((((....((..(((((((((.......)))))))))..)).....))))))))))))))((((.((((...))))))))..)))))..)))))...))))))(((.....(....).....))).....)))))))..(....)..)))))))))).....(((.(((......))).)))((((((....(((((....(....)..)))))..)))))).)))))).........))))))))(((((...)))))....)))))).(((......)))....)).)))))))..))))((((((..((((..((((.(((((..........))))).)))).(((((((....((((((((((((.(((((((.....)))))))...............(((.((((......)))))))...))))))((.(((((....((((((((........).)))))))..))))).)).......))))))..)))))))......((((((.((((.....)))).))))))............)))).(((((((((.((((........))))...(((...(((((((((((((.((..((((.(.....).))))..)).))).((((((((((((..(((((.....((((((((.....))).))))).........((((((((..(((....(((...((((((.((((..((((((((((..((..(((((...((((..(((((((.((....((.(((......)))))....))....(....)..)))))))..)))).......(((((...(((.....))))))))..)).)))..)).))))))....))))..)))))))))).........(((((....))))).....(((.((.(((....(((((....)))))..))).)).))).....((...((((.(((((.(((.((((((((........))))).))).))).).)))).))))..)).((((.((.((((((...((((((((.....((((((((.....))))))))..........(((...((((....))))))).......))))))))..(((.((((..(((((((((.((((....))))....)))))))))..)))))))...)))))))).)))).)))..)))....)))))))).......)))))(((((((((....(((((..(.((......))))))))...)).)))))))...))))))))))))(((((((..(....)..)))))))((((((......))))))....))))))))))...)))..)))))))))..............)))))).((((((..(.((((.(((((((......((((((..........)))))).(((((.(((.....))).))).)).....)))))))..)))).)...))))))...)))))...... (-477.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 942 110 61 201 152 NC_002967:TDE1188|5end_NAD(P)_transhydrogenase,_beta_subunit_1216622..1216852_NEGATIVE 492 877 834 53 7 NC_002967:TDE0239|5end_glycine_reductase_complex_protein_GrdD_272982..273212_NEGATIVE 429 847 801 169 109 NC_002967:TDE2268|5end_hypothetical_protein_2304959..2305189_NEGATIVE 415 860 814 70 15 NC_002967:TDE1540|5end_hypothetical_protein_1584422..1584652_POSITIVE 412 904 864 192 153 NC_002967:TDE1930|5end_hypothetical_protein_1948556..1948786_NEGATIVE 411 1362 1322 227 190 NC_002967:TDE2155|5end_50S_ribosomal_protein_L35_2190165..2190395_NEGATIVE 403 879 833 203 150 NC_002967:TDE2607|5end_hypothetical_protein_2648586..2648816_POSITIVE 402 846 801 48 1 NC_002967:TDE0046|5end_formiminotransferase-cyclodeaminase_family_protein_55849..56079_NEGATIVE 401 898 851 103 46 NC_002967:TDE2181|5end_PAP2_family_protein_2213035..2213265_NEGATIVE 397 1340 1292 60 15 NC_002967:TDE2572|5end_CDP-diacylglycerol--glycerol-3-phosphate_3-phosphatidyltransferase_2598738..2598968_NEGATIVE 392 847 803 231 173 NC_002967:TDE2056|5end_outer_membrane_hemin-binding_protein_A_2085070..2085300_NEGATIVE 391 759 717 82 30 NC_002967:TDE0103|5end_aminotransferase,_class-V_123686..123916_NEGATIVE 386 799 753 87 45 NC_002967:TDE1914|5end_Holliday_junction_DNA_helicase_RuvB_1931920..1932150_NEGATIVE 378 1330 1287 64 18 NC_002967:TDE1042|5end_deoxyuridine_5'triphosphate_nucleotidohydrolase_1070492..1070722_POSITIVE 377 562 523 135 97 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 375 802 761 113 71 NC_002967:TDE1362|5end_hypothetical_protein_1400992..1401222_POSITIVE 373 790 741 79 9 NC_002967:TDE1629|5end_dihydrolipoamide_dehydrogenase_1678514..1678744_NEGATIVE 373 847 801 169 102 NC_002967:TDE0946|5end_hypothetical_protein_968212..968442_POSITIVE 371 352 313 225 188 NC_002967:TDE2583|5end_hypothetical_protein_2616322..2616552_POSITIVE 371 864 821 63 17 NC_002967:TDE0743|5end_thioredoxin_reductase_778718..778948_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 435 845 801 151 96 NC_002967:TDE2423|3end_ribosomal_protein_L10_2453417..2453567_NEGATIVE 425 877 840 40 1 NC_002967:TDE0240|3end_glycine_reductase_complex_protein_GrdC_272995..273145_NEGATIVE 421 890 842 58 5 NC_002967:TDE1277|3end_Fe-hydrogenase_large_subunit_family_protein_1312242..1312392_POSITIVE 420 880 831 149 102 NC_002967:TDE0490|3end_hypothetical_protein_546272..546422_NEGATIVE 406 859 813 130 88 NC_002967:TDE0742|3end_hypothetical_protein_778450..778600_NEGATIVE 403 879 833 88 35 NC_002967:TDE2606|3end_urocanate_hydratase_2648551..2648701_POSITIVE 403 914 873 79 27 NC_002967:TDE1396|3end_hypothetical_protein_1436127..1436277_POSITIVE 401 898 851 103 46 NC_002967:TDE2182|3end_hypothetical_protein_2213035..2213185_NEGATIVE 400 657 616 131 99 NC_002967:TDE0642|3end_hypothetical_protein_678460..678610_NEGATIVE 394 1338 1292 64 27 NC_002967:TDE1252|3end_lipoprotein,_putative_1287094..1287244_POSITIVE 393 887 841 60 15 NC_002967:TDE1982|3end_hypothetical_protein_1992511..1992661_NEGATIVE 392 847 803 143 85 NC_002967:TDE2057|3end_hypothetical_protein_2085158..2085308_NEGATIVE 391 759 717 85 33 NC_002967:TDE0104|3end_3-dehydroquinate_synthase_123683..123833_NEGATIVE 386 799 753 79 37 NC_002967:TDE1915|3end_alcohol_dehydrogenase,_iron-containing_1931928..1932078_NEGATIVE 383 1419 1373 138 86 NC_002967:TDE0813|3end_ABC_transporter,_ATP-binding_protein/permease_835707..835857_POSITIVE 375 802 761 147 105 NC_002967:TDE1361|3end_hypothetical_protein_1401106..1401256_POSITIVE 367 564 522 64 16 NC_002967:TDE0099|3end_adenine-specific_DNA_modification_methyltransferase_117014..117164_POSITIVE 364 856 813 147 105 NC_002967:TDE2622|3end_ABC_transporter,_ATP-binding_protein_2662178..2662328_NEGATIVE 360 910 865 50 3 NC_002967:TDE2763|3end_flagellar_motor_switch_protein_2817737..2817887_NEGATIVE 360 780 731 135 79 NC_002967:TDE0133|3end_transcriptional_regulator,_GntR_family_153202..153352_POSITIVE