Origin IGS: ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttataatgaataactatttcgttaggcgtgcgttattgattattcctaccttatataggaattactctggttgtttttgcaattacacgtgccgtacccggtggtcctgttgagcagaccttaaatcagcttatcttcggtcaagagggtaagaataataacaaagacgtaaaaaataccagtgctctcaaagcggaaattgaaaaagagcttagagcttattacggttttgataaaccatggtatatttcttatgttcaatggatgggtaaggtgcttagaggtgacttaggccgttcaaccaaatacggtgataaggtcatagatatggtcggatcccgtatccctatttcgttgcgtttcggtcttatctcgctgatattaacctattccgtttgtattcccttgggtatgtccaaggcccttaagcataaaaccgtatcggataacatttcatcatttattataataataacctatgccttaccgagctatgttgtagctattattatccttaccgtattttcttttaggctcaatatcttcccttcaggcggtttgtattccagaaactatgcagaactttcgtttttcggtaagctcggtgataattttatgcacatgttcctgcctatggtcgcctataccttgggaagctttgcgactcttacaatagccaccaaaaactatctcatggaaaatatggcctcggactatgttaagacagccgttgcaaagggtagaacctttagggatgctctttggaaacatgcttttagaaacagtatgattcctgtagctgcaggactcggcggtatattgggtatcttctttgcaggtgccttccttatcgagaagatatttaatataaacggcatgggctttttaggttttaaggccttggaagaaagagattatgctattgttttaggaacccttgttataacttctcttgtttcaatggtttcaaacatattaagcgattttatagtatcacttgttgatccgcgaattaaacttggaaagtaattggaaggtaaagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 actttaccttccaattactttccaagtttaattcgcggatcaacaagtgatactataaaatcgcttaatatgtttgaaaccattgaaacaagagaagttataacaagggttcctaaaacaatagcataatctctttcttccaaggccttaaaacctaaaaagcccatgccgtttatattaaatatcttctcgataaggaaggcacctgcaaagaagatacccaatataccgccgagtcctgcagctacaggaatcatactgtttctaaaagcatgtttccaaagagcatccctaaaggttctaccctttgcaacggctgtcttaacatagtccgaggccatattttccatgagatagtttttggtggctattgtaagagtcgcaaagcttcccaaggtataggcgaccataggcaggaacatgtgcataaaattatcaccgagcttaccgaaaaacgaaagttctgcatagtttctggaatacaaaccgcctgaagggaagatattgagcctaaaagaaaatacggtaaggataataatagctacaacatagctcggtaaggcataggttattattataataaatgatgaaatgttatccgatacggttttatgcttaagggccttggacatacccaagggaatacaaacggaataggttaatatcagcgagataagaccgaaacgcaacgaaatagggatacgggatccgaccatatctatgaccttatcaccgtatttggttgaacggcctaagtcacctctaagcaccttacccatccattgaacataagaaatataccatggtttatcaaaaccgtaataagctctaagctctttttcaatttccgctttgagagcactggtattttttacgtctttgttattattcttaccctcttgaccgaagataagctgatttaaggtctgctcaacaggaccaccgggtacggcacgtgtaattgcaaaaacaaccagagtaattcctatataaggtaggaataatcaataacgcacgcctaacgaaatagttattcattataaagctccataaaaccaagatactaaatatgcgacacagcctaaccgaattatatcagcttgattatcttatatgaggtaagggatatgcatacttagacatttggcattttagcataatgtaaaaaaaaagtctagagtatcaagtaaaattccataggataatttgcaataagggcag Mask Tandem Repeat Region ================================================ ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttataatgaataactatttcgttaggcgtgcgttattgattattcctaccttatataggaattactctggttgtttttgcaattacacgtgccgtacccggtggtcctgttgagcagaccttaaatcagcttatcttcggtcaagagggtaagaataataacaaagacgtaaaaaataccagtgctctcaaagcggaaattgaaaaagagcttagagcttattacggttttgataaaccatggtatatttcttatgttcaatggatgggtaaggtgcttagaggtgacttaggccgttcaaccaaatacggtgataaggtcatagatatggtcggatcccgtatccctatttcgttgcgtttcggtcttatctcgctgatattaacctattccgtttgtattcccttgggtatgtccaaggcccttaagcataaaaccgtatcggataacatttcatcatttattataataataacctatgccttaccgagctatgttgtagctattattatccttaccgtattttcttttaggctcaatatcttcccttcaggcggtttgtattccagaaactatgcagaactttcgtttttcggtaagctcggtgataattttatgcacatgttcctgcctatggtcgcctataccttgggaagctttgcgactcttacaatagccaccaaaaactatctcatggaaaatatggcctcggactatgttaagacagccgttgcaaagggtagaacctttagggatgctctttggaaacatgcttttagaaacagtatgattcctgtagctgcaggactcggcggtatattgggtatcttctttgcaggtgccttccttatcgagaagatatttaatataaacggcatgggctttttaggttttaaggccttggaagaaagagattatgctattgttttaggaacccttgttataacttctcttgtttcaatggtttcaaacatattaagcgattttatagtatcacttgttgatccgcgaattaaacttggaaagtaattggaaggtaaagt Find is-nt database================================================ Query_seq: TDE0982:TDE0984|TDE0982:TDE0984:dihydroorotate dehydrogenase/oxidoreductase, FAD-binding:oligopeptide/dipeptide ABC transporter, permease protein, putative:->->:1008393..1009613 1221 ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttataatgaataactatttcgttaggcgtgcgttattgattattcctaccttatataggaattactctggttgtttttgcaattacacgtgccgtacccggtggtcctgttgagcagaccttaaatcagcttatcttcggtcaagagggtaagaataataacaaagacgtaaaaaataccagtgctctcaaagcggaaattgaaaaagagcttagagcttattacggttttgataaaccatggtatatttcttatgttcaatggatgggtaaggtgcttagaggtgacttaggccgttcaaccaaatacggtgataaggtcatagatatggtcggatcccgtatccctatttcgttgcgtttcggtcttatctcgctgatattaacctattccgtttgtattcccttgggtatgtccaaggcccttaagcataaaaccgtatcggataacatttcatcatttattataataataacctatgccttaccgagctatgttgtagctattattatccttaccgtattttcttttaggctcaatatcttcccttcaggcggtttgtattccagaaactatgcagaactttcgtttttcggtaagctcggtgataattttatgcacatgttcctgcctatggtcgcctataccttgggaagctttgcgactcttacaatagccaccaaaaactatctcatggaaaatatggcctcggactatgttaagacagccgttgcaaagggtagaacctttagggatgctctttggaaacatgcttttagaaacagtatgattcctgtagctgcaggactcggcggtatattgggtatcttctttgcaggtgccttccttatcgagaagatatttaatataaacggcatgggctttttaggttttaaggccttggaagaaagagattatgctattgttttaggaacccttgttataacttctcttgtttcaatggtttcaaacatattaagcgattttatagtatcacttgttgatccgcgaattaaacttggaaagtaattggaaggtaaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE0982:TDE0984|TDE0982:TDE0984:dihydroorotate dehydrogenase/oxidoreductase, FAD-binding:oligopeptide/dipeptide ABC transporter, permease protein, putative:->->:1008393..1009613 1221 ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttataatgaataactatttcgttaggcgtgcgttattgattattcctaccttatataggaattactctggttgtttttgcaattacacgtgccgtacccggtggtcctgttgagcagaccttaaatcagcttatcttcggtcaagagggtaagaataataacaaagacgtaaaaaataccagtgctctcaaagcggaaattgaaaaagagcttagagcttattacggttttgataaaccatggtatatttcttatgttcaatggatgggtaaggtgcttagaggtgacttaggccgttcaaccaaatacggtgataaggtcatagatatggtcggatcccgtatccctatttcgttgcgtttcggtcttatctcgctgatattaacctattccgtttgtattcccttgggtatgtccaaggcccttaagcataaaaccgtatcggataacatttcatcatttattataataataacctatgccttaccgagctatgttgtagctattattatccttaccgtattttcttttaggctcaatatcttcccttcaggcggtttgtattccagaaactatgcagaactttcgtttttcggtaagctcggtgataattttatgcacatgttcctgcctatggtcgcctataccttgggaagctttgcgactcttacaatagccaccaaaaactatctcatggaaaatatggcctcggactatgttaagacagccgttgcaaagggtagaacctttagggatgctctttggaaacatgcttttagaaacagtatgattcctgtagctgcaggactcggcggtatattgggtatcttctttgcaggtgccttccttatcgagaagatatttaatataaacggcatgggctttttaggttttaaggccttggaagaaagagattatgctattgttttaggaacccttgttataacttctcttgtttcaatggtttcaaacatattaagcgattttatagtatcacttgttgatccgcgaattaaacttggaaagtaattggaaggtaaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 184 Max: 1201 Len: 1018 Subject: gi|89108996|ref|AP_002776.1| predicted oligopeptide transporter subunit [Escherichia coli W3110] HSP 1 e-value: 6.0E-52 bit: 197.0 Len: 954 Query Start:239 Query End:1192 Subject Strand: null Subject Start: 19 Subject End: 359 .............................................................................................................................................................................................................................................. I T L V V F A I T R A V P G G P V E Q T L N Q L I F G - - - - - - - - - - - - - - - - - - Q E G K N N N K D - - V K N T S A L K A E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S - - F R L N I F P S G G L Y S R N Y A E L S F F G K L G D N F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M - I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I ............................. .............................................................................................................................................................................................................................................. I I T I N F F I V Q I A P G G P V D Q A I A A I E F G N A G V L P G A G G E G V R A S H A Q T G V G N I S D S N Y R G G R G L D P E V I A E I T H R Y G F D K P I H E R Y F K M L W D Y I R F D F G D S L F R S A S V L T L I K D S L P V S I T L G L W S T L I I Y L V S I P L G I R K A V Y N G S R F D V W S S A F I I I G Y A I P A F L F A I L L I V F F A G G S Y F D L F P L R G L V S A N F D S L P W Y Q K I T D Y L W H I T L P V L A T V I G G F A A L T M L T K N S F L D E V R K Q Y V V T A R A K G V S E K N I L W K H V F R N A M L L V I A G F P A T F I S M F F T G S L L I E V M F S L N G L G L L G Y E A T V S R D Y P V M F G T L Y I F T L I G L L L N I V S D I S Y T L V D P R I ............................. HSP 2 e-value: 6.0E-52 bit: 25.8 Len: 51 Query Start:184 Query End:234 Subject Strand: null Subject Start: 1 Subject End: 17 ....................................................................................................................................................................................... M N N Y F V R R A L L I I P T L Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................... M G A Y L I R R L L L V I P T L W ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|89110470|ref|AP_004250.1| dipeptide transporter [Escherichia coli W3110] HSP 1 e-value: 3.0E-31 bit: 133.0 Len: 966 Query Start:230 Query End:1195 Subject Strand: null Subject Start: 16 Subject End: 336 ..................................................................................................................................................................................................................................... Y I G I T L V V F A I T R A V P G G P V E Q T L N Q L I F G Q E G K N N N K D V K N T S A L K A E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G - - - - - - - - - - - - - L Y S R N Y A E L S F F G K L G - - - D N F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I K .......................... ..................................................................................................................................................................................................................................... F I G I T L L T F A F V H M I P G D P V - - - - - M I M A G E R G - - - - - - - - - - - - I S P E R H A Q L L A E L G L D K P M W Q Q Y L H Y I W G V M H G D L G I S M K S R I P V W E E F V P R F Q A T L E L G V C A M I F A T A V G I P V G V L A A V K R G S I F D H T A V G L A L T G Y S M P I F W W G M M L I M L V S V H W N L T P V S G R V S D M V F L D D S N P L T G F M L I D T A I W G E D G N F I D A V A H M I L P A I V L G T I P L A V I V R M T R S S M L E V L G E D Y I R T A R A K G L T R M R V I I V H A L R N A M L P V V T V I G L Q V G T L L A G A I L T E T I F S W P G L G R W L I D A L Q R R D Y P V V Q G G V L L V A T M I I L V N L L V D L L Y G V V N P R I R .......................... Subject: gi|89108090|ref|AP_001870.1| oligopeptide transporter subunit [Escherichia coli W3110] HSP 1 e-value: 6.0E-28 bit: 122.0 Len: 831 Query Start:365 Query End:1195 Subject Strand: null Subject Start: 41 Subject End: 305 ............................................................................................................................................................................................................................................................................................................................................................................ L K A E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D - K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G L Y S R N Y A E L S F F G K L G D N F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I K .......................... ............................................................................................................................................................................................................................................................................................................................................................................ L P P E V M A N I E A K Y H L N D P I M T Q Y F S Y L K Q L A H G D F G P S F K Y K D Y S V N D L V A S S F P V S A K L G A A A F F L A V I L G V S A G V I A A L K Q N T K W D Y T V M G L A M T G V V I P S F V V A P L L V M I F A I I L H W L P G G G W - - - N G G A L K F - - - - - - - - - - M I L P M V A L S L A Y I A S I A R I T R G S M I E V L H S N F I R T A R A K G L P M R R I I L R H A L K P A L L P V L S Y M G P A F V G I I T G S M V I E T I Y G L P G I G Q L F V N G A L N R D Y S L V L S L T I L V G A L T I L F N A I V D V L Y A V I D P K I R .......................... Subject: gi|89107682|ref|AP_001462.1| predicted peptide transporter subunit [Escherichia coli W3110] HSP 1 e-value: 5.0E-24 bit: 106.0 Len: 957 Query Start:239 Query End:1195 Subject Strand: null Subject Start: 19 Subject End: 304 .............................................................................................................................................................................................................................................. I T L V V F A I T R A V P G G P V E Q T L N Q L I F G Q E G K N N N K D V K N T S A L K A E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G L Y S R N Y A E L S F F G K L G D N F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I K .......................... .............................................................................................................................................................................................................................................. V S V L V F L F V H M L P G D P A - - - - - R L I A G P E A D - - - - - - - - - - - - - A Q V I E L V R Q Q L G L D Q P L Y H Q F W H Y I S N A V Q G D F G L S M V S R R P V A D E I A S R F M P T L W L T I T S M V W A V I F G M A A G I I A A V W R N R W P D R L S M T I A V S G I S F P A F A L G M L L I Q V F S V E L G W L P T V G - - - - - - - - - - - - - - - A D S W Q H Y I L P S L T L G A A V A A V M A R F T R A S F V D V L S E D Y M R T A R A K G V S E T W V V L K H G L R N A M I P V V T M M G L Q F G F L L G G S I V V E K V F N W P G L G R L L V D S V E M R D Y P V I Q A E I L L F S L E F I L I N L V V D V L Y A A I N P A I R .......................... HSP 2 e-value: 5.0E-24 bit: 23.1 Len: 51 Query Start:184 Query End:234 Subject Strand: null Subject Start: 1 Subject End: 17 ....................................................................................................................................................................................... M N N Y F V R R A L L I I P T L Y ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................... M L N Y V I K R L L G L I P T L F ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|89108329|ref|AP_002109.1| D-Ala-D-Ala transporter subunit [Escherichia coli W3110] HSP 1 e-value: 2.0E-21 bit: 100.0 Len: 984 Query Start:218 Query End:1201 Subject Strand: null Subject Start: 14 Subject End: 337 ......................................................................................................................................................................................................................... L F L P Y I G I T L V V F A I T R A V P G G P V E Q T L N Q L I F G Q E G K N N N K D V K N T S A L K A E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G L - - - - - - - - - - - - - Y S R N Y A E L S F F G K L G D N - F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I K L G .................... ......................................................................................................................................................................................................................... L V L V V A G V C V I T F I I S H L I P G D P A - - - - - R L L A G D R A S D - - - - - - - - - - - - - A I V E N I R Q Q L G L D Q P L Y V Q F Y R Y V S D L F H G D L G T S I R T G R P V L E E L R I F F P A T L E L A F G A L L L A L L I G I P L G I L S A V W R N R W L D H L V R I M A I T G I S T P A F W L G L G V I V L F Y G H L Q I L P G G G R L D D W L D P P T H V T G F Y L L D A L L E G N G E V F F N A L Q H L I L P A L T L A F V H L G I V A R Q I R S A M L E Q L S E D Y I R T A R A S G L P G W Y I V L C Y A L P N A L I P S I T V L G L A L G D L L Y G A V L T E T V F A W P G M G A W V V T S I Q A L D F P A V M G F A V V V S F A Y V L V N L V V D L L Y L W I D P R I G R G .................... Subject: gi|89110535|ref|AP_004315.1| nickel transporter subunit [Escherichia coli W3110] HSP 1 e-value: 9.0E-18 bit: 88.2 Len: 822 Query Start:374 Query End:1195 Subject Strand: null Subject Start: 49 Subject End: 307 ..................................................................................................................................................................................................................................................................................................................................................................................... E I E K E L R A Y Y G F D K P W Y I S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G L Y S R N Y A E L S F F G K L G D N F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P R I K .......................... ..................................................................................................................................................................................................................................................................................................................................................................................... E M L A S T R T M L G L D Q P L Y V Q Y G T W L W K A L H L D F G I S F A S Q R P V L D D M L N F L P A T L E L A G A A L V L I L L T S V P L G I W A A R H R D R L P D F A V R F I A F L G V S M P N F W L A F L L V M A F S V Y L Q W L P A M G Y - - - - - - - - - - - - - - - G G W Q H I I L P A V S I A F M S L A I N A R L L R A S M L D V A G Q R H V T W A R L R G L N D K Q T E R R H I L R N A S L P M I T A V G M H I G E L I G G T M I I E N I F A W P G V G R Y A V S A I F N R D Y P V I Q C F T L M M V V V F V V C N L I V D L L N A A L D P R I R .......................... Subject: gi|89108139|ref|AP_001919.1| predicted antimicrobial peptide transporter subunit [Escherichia coli W3110] HSP 1 e-value: 5.0E-14 bit: 75.9 Len: 759 Query Start:428 Query End:1186 Subject Strand: null Subject Start: 43 Subject End: 311 ........................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y V Q W M G K V L R G D L G R S T K Y G D K V I D M V G S R I P I S L R F G L I S L I L T Y S V C I P L G M S K A L K H K T V S D N I S S F I I I I T Y A L P S Y V V A I I I L T V F S F R L N I F P S G G L Y S R N Y A E L S F F G - - - - - - K L G D N - - - - - - - - - - F M H M F L P M V A Y T L G S F A T L T I A T K N Y L M E N M A S D Y V K T A V A K G R T F R D A L W K H A F R N S M I P V X X X X X X X X X X X X X X X X X X E K I F N I N G M G F L G F K A L E E R D Y A I V L G T L V I T S L V S M V S N I L S D F I V S L V D P ................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................... A W V F W F N G L I H W D F G V S S I N G Q P I A E Q L K E V F P A T M E L C I L A F G F A L I V G I P V G M I A G I T R H K W Q D N L I N A I A L L G F S I P V F W L A L L L T L F C S L T L G W L P V S G R F D L L Y E V K P I T G F A L I D A W L S D S P W R D E M I M S A I R H M I L P V I T L S V A P T T E V I R L M R I S T I E V Y D Q N Y V K A A A T R G L S R F T I L R R H V L H N A L P P V I P R L G L Q F S T M L T L A M I T E M V F S W P G L G R W L I N A I R Q Q D Y A A I S A G V M V C G S L V I I V N V I S D I L G A M A N P ................................... Find nr database================================================ Query_seq: TDE0982:TDE0984|TDE0982:TDE0984:dihydroorotate dehydrogenase/oxidoreductase, FAD-binding:oligopeptide/dipeptide ABC transporter, permease protein, putative:->->:1008393..1009613 1221 ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaattggaaggtaaagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaattggaaggtaaagt Predict ORF larger than 30AA ================================================ Protein_Len: 49 Strand: + Start: 142 End: 288 ............................................................................................................................................. M C R I F S I L V L W S F I M N N Y F V R R A L L I I P T L Y R N Y S G C F C N Y T C R T R W S C ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 354 End: 467 ................................................................................................................................................................................................................................................................................................................................................................. M P V L S K R K L K K S L E L I T V L I N H G I F L M F N G W V R C L E V T .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 30 Strand: + Start: 514 End: 603 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M P Y P Y F V A F R S Y L A D I N L F R L Y S L G Y V Q G P .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 45 Strand: + Start: 717 End: 851 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M S S L Q A V C I P E T M Q N F R F S V S S V I I L C T C S C L W S P I P W E A L R L L Q .................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 867 End: 965 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S W K I W P R T M L R Q P L Q R V E P L G M L F G N M L L E T V ................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 233 End: 1204 ........................................................................................................................................................................................................................................ M G I T L V V F A I T R A V P G G P V E Q T L N Q L I F G Q E G K N N N K D V K N T S A L K A E I E K E L R A Y Y G F D ................. Protein_Len: 32 Strand: - Start: 1096 End: 1191 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A I T K P V R T I V E R T E I T E F M N L S K I T D S T S G R M .............................. Protein_Len: 54 Strand: - Start: 895 End: 1056 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. T L V A T A F P L V K L S A R Q F C A K L F L I I G T A A P S P P I N P I K K A P A K R I S F I N L I F P M ..................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 731 End: 1045 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... I E H F I H G R V I N L C G N C L T S G K P I S K P F M S K S V T H N R Y S C S E A T Y Q T D E K C T G E K D L L Y K M ................................................................................................................................................................................ Protein_Len: 40 Strand: - Start: 439 End: 558 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... H I P L T S L P S K P R E V L Y P S L T M S I T P D R I G I E N R K P R I E S M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 46 Strand: - Start: 302 End: 439 ............................................................................................................................................................................................................................................................................................................. I L K D E T L L T L I I V F V Y F I G T S E F R F N F F L K S S I V T K I F W P I N R I N M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaattggaaggtaaagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 44 End: 73 ...........................................CTAGACTTTTTTTTTACATTATGCTAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 407 End: 436 ......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATAAACCATGGTATATTTCTTATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaattggaaggtaaagt Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: TDE0982:TDE0984|TDE0982:TDE0984:dihydroorotate dehydrogenase/oxidoreductase, FAD-binding:oligopeptide/dipeptide ABC transporter, permease protein, putative:->->:1008393..1009613 1221 ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagtaattggaaggtaaagt Intra-Species Hit: Count: 1 Min: 1 Max: 183 Len: 183 Subject: NC_002967_TDE0982_TDE0984|dihydroorotate dehydrogenase/oxidoreductase, FAD-binding:oligopeptide/dipeptide ABC transporter, permease protein, putative|POSITIVE:POSITIVE|[1008393,1009613]|1221 HSP 1 e-value: 1.0E-82 bit: 309.0 Len: 183 Query Start:1 Query End:183 Subject Strand: POSITIVE Subject Start: 1 Subject End: 183 ctgcccttattgcaaattatcctatggaattttacttgatactctagacnnnnnnnnnacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttata.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ctgcccttattgcaaattatcctatggaattttacttgatactctagactttttttttacattatgctaaaatgccaaatgtctaagtatgcatatcccttacctcatataagataatcaagctgatataattcggttaggctgtgtcgcatatttagtatcttggttttatggagctttata.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGCCCUUAUUGCAAAUUAUCCUAUGGAAUUUUACUUGAUACUCUAGACUUUUUUUUUACAUUAUGCUAAAAUGCCAAAUGUCUAAGUAUGCAUAUCCCUUACCUCAUAUAAGAUAAUCAAGCUGAUAUAAUUCGGUUAGGCUGUGUCGCAUAUUUAGUAUCUUGGUUUUAUGGAGCUUUAUA .(((.......))).....(((.((((((((......(((((................(((((..((......))..))))).(((((((((......((((.......))))(((..(.((((((......)))))).)..)))...))))))))))))))..)))))))))))........ (-30.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAUAAAGCUCCAUAAAACCAAGAUACUAAAUAUGCGACACAGCCUAACCGAAUUAUAUCAGCUUGAUUAUCUUAUAUGAGGUAAGGGAUAUGCAUACUUAGACAUUUGGCAUUUUAGCAUAAUGUAAAAAAAAAGUCUAGAGUAUCAAGUAAAAUUCCAUAGGAUAAUUUGCAAUAAGGGCAG ......((.((..........((((((...((((((......(((.(((...((((((.((.........)).))))))))).)))....))))))..(((((.(((.(((((.......))))).....))).))))).))))))..(((((..(((...)))...))))).....)))).. (-34.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 359 170 122 69 34 NC_002967:TDE0144|5end_thiamine_ABC_transporter,_permease_protein_165007..165237_POSITIVE 268 155 117 164 125 NC_002967:TDE0502|5end_ankyrin_repeat_protein_556558..556788_NEGATIVE 259 178 132 53 5 NC_002967:TDE1893|5end_GTP-binding_protein_LepA_1914017..1914247_NEGATIVE 257 179 132 59 10 NC_002967:TDE0075|5end_sorbitol_dehydrogenase,_putative_86573..86803_NEGATIVE 254 150 107 67 25 NC_002967:TDE1445|5end_hypothetical_protein_1491927..1492157_NEGATIVE 249 45 1 216 170 NC_002967:TDE0828|5end_glucose-inhibited_division_protein_A_850169..850399_NEGATIVE 249 180 132 142 87 NC_002967:TDE0379|5end_hypothetical_protein_432458..432688_POSITIVE 248 139 91 204 153 NC_002967:TDE1899|5end_hypothetical_protein_1921088..1921318_NEGATIVE 245 105 62 225 173 NC_002967:TDE0152|5end_amino_acid_permease_family_protein_174477..174707_NEGATIVE 240 176 133 95 45 NC_002967:TDE2231|5end_internalin-related_protein_2269638..2269868_POSITIVE 240 69 35 117 84 NC_002967:TDE0110|5end_M23/M37_peptidase_domain_protein_130581..130811_POSITIVE 238 164 122 63 23 NC_002967:TDE2174|5end_hypothetical_protein_2204034..2204264_NEGATIVE 236 167 122 180 136 NC_002967:TDE0272|5end_hypothetical_protein_302870..303100_NEGATIVE 234 123 82 117 74 NC_002967:TDE1631|5end_citrate_lyase,_alpha_subunit_1681556..1681786_NEGATIVE 234 180 134 50 10 NC_002967:TDE1312|5end_hypothetical_protein_1349088..1349318_POSITIVE 233 176 134 167 124 NC_002967:TDE2777|5end_hypothetical_protein_2828312..2828542_POSITIVE 233 125 81 55 4 NC_002967:TDE2170|5end_hypothetical_protein_2201749..2201979_NEGATIVE 232 149 113 216 179 NC_002967:TDE2059|5end_hypothetical_protein_2086509..2086739_NEGATIVE 232 166 128 227 185 NC_002967:TDE1251|5end_batB_protein,_putative_1285448..1285678_POSITIVE 231 180 131 216 151 NC_002967:TDE2340|5end_FMN-binding_domain_protein_2377855..2378085_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 359 170 122 85 50 NC_002967:TDE0143|3end_thiamine_ABC_transporter,_thiamine-binding_protein_165103..165253_POSITIVE 332 43 3 92 38 NC_002967:TDE1857|3end_hypothetical_protein_1883929..1884079_NEGATIVE 268 155 117 142 103 NC_002967:TDE0503|3end_hypothetical_protein_556580..556730_NEGATIVE 258 166 121 151 100 NC_002967:TDE1499|3end_adenylosuccinate_lyase,_putative_1546788..1546938_POSITIVE 252 177 132 49 5 NC_002967:TDE0323|3end_hypothetical_protein_355750..355900_NEGATIVE 250 151 119 128 94 NC_002967:TDE0142|3end_hypothetical_protein_163979..164129_NEGATIVE 249 180 132 120 65 NC_002967:TDE0378|3end_hypothetical_protein_432516..432666_POSITIVE 248 142 107 151 111 NC_002967:TDE1066|3end_hypothetical_protein_1094335..1094485_NEGATIVE 246 180 134 79 33 NC_002967:TDE0433|3end_hypothetical_protein_488553..488703_NEGATIVE 243 176 134 140 88 NC_002967:TDE0463|3end_purine_nucleoside_phosphorylase_517964..518114_POSITIVE 241 180 131 76 12 NC_002967:TDE2038|3end_UVR_domain_protein_2067704..2067854_NEGATIVE 234 177 134 95 43 NC_002967:TDE2517|3end_DNA_repair_protein_RadA_2542454..2542604_NEGATIVE 234 123 82 104 61 NC_002967:TDE1632|3end_citrate_lyase,_beta_subunit_1681569..1681719_NEGATIVE 232 161 121 42 1 NC_002967:TDE0359|3end_ABC_transporter,_ATP-binding/permease_protein_402193..402343_NEGATIVE 231 175 133 51 5 NC_002967:TDE1767|3end_hypothetical_protein_1812926..1813076_NEGATIVE 230 180 132 69 9 NC_002967:TDE2154|3end_50S_ribosomal_protein_L20_2189575..2189725_NEGATIVE 229 170 121 134 94 NC_002967:TDE0012|3end_carbon_starvation_protein_CstA,_putative_17702..17852_POSITIVE 226 177 133 126 81 NC_002967:TDE2492|3end_hypothetical_protein_2515509..2515659_NEGATIVE 226 169 130 71 24 NC_002967:TDE1072|3end_lipoprotein,_putative_1103436..1103586_POSITIVE 225 175 134 135 98 NC_002967:TDE1707|3end_hypothetical_protein_1762775..1762925_NEGATIVE