Origin IGS: aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attccttaaaagtttttgactcgcatgtccatagttctccgtaaggtttcaatcgctgtccgggggagatagttaagctgtgaataaatgcaaacctctactttcatttcatcatttatctcaattcaataattttttgtaaaaatattgtcaaattgtatattcgattttatacaacaatttaataaaatattttacgtgtctcttcctttataaaattaccattgatatcatataagtcagaagtatatgtatcaacaacttctaacatataatttattttcataaaataatgtcttttaccttcatgcgttatatggaaccatatcataaaattaggatcatcaggtctgcttacatcacttataaagtgcaaagtaatattatcaacttcatagtaatgacaggatattactccacgttttggaggttgttgatacacaagataatatatagtttcaagaatatcacgaaaatcaggatcataattaacttctgaccatccattcgacttcatatattttttaaaattttcatatttttttctttgggaaaatgtagagcatgaaataatcataaatcctaacacaacaattaatagcaaactaaatttctttctcacttttttatctcccatattatttatacctgtaactataataaaaactcaaaatcacatctcaattttatttaatatttaaattgttttaatttttattctctcctataaaaatatacaatccccatataataaaaatccggcaaggctttgataaaccatgccggttaaaagtctatatcctt Mask Tandem Repeat Region ================================================ aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Find is-nt database================================================ Query_seq: TDE0949:TDE0950|TDE0949:TDE0950:enolase:hypothetical protein:-><-:973452..974255 804 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE0949:TDE0950|TDE0949:TDE0950:enolase:hypothetical protein:-><-:973452..974255 804 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE0949:TDE0950|TDE0949:TDE0950:enolase:hypothetical protein:-><-:973452..974255 804 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 298 End: 390 ......................................................................................................................................................................................................................................................................................................... M D G Q K L I M I L I F V I F L K L Y I I L C I N N L Q N V E .............................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 144 End: 620 ............................................................................................................................................... M I V T G I N N M G D K K V R K K F S L L L I V V L G F M I I S C S T F S Q R K K Y E N F K K Y M K S N G W S E V N Y D ........................................................................................................................................................................................ Protein_Len: 39 Strand: + Start: 680 End: 796 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M E I N D E M K V E V C I Y S Q L N Y L P R T A I E T L R R T M D M R V K N F ........ Protein_Len: 33 Strand: - Start: 623 End: 721 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I T T Y F R I Y L K V I N K C F I I S N L Y I I F H F Y L N A N M ................................................................................... Protein_Len: 60 Strand: - Start: 309 End: 533 .................................................................................................................................................................................................................................................................................................................... I I K H I L L R W F T S Y Y G T M V I F N I I N S Q V K Y T I Y A S R I I R I K H Y P E M Y R M F T F S M I K H F Y I M ............................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 107 End: 289 .......................................................................................................... N F L I S I H N Q T K I I T V P I F L I P S L F T L F F N L K S N I T T N P N I I I E H E V N E W L F F Y S F K L F Y M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 87 Start: 546 End: 575 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATACATATACTTCTGACTTATATGAT..................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 342 End: 371 .....................................................................................................................................................................................................................................................................................................................................................CTTGAAACTATATATTATCTTGTGTATCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 629 End: 658 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAATTGTATATTCGATTTTATACA.................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 47 HP_score: -2.2 Tail_Score: -3.71848 Start: 375 End: 391 Full_Region: taatgacaggatatt actcca cgttt tggagg ttgttgatacacaag ......................................................................................................................................................................................................................................................................................................................................................................................actccacgttttggagg............................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TDE0949:TDE0950|TDE0949:TDE0950:enolase:hypothetical protein:-><-:973452..974255 804 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagagaataaaaattaaaacaatttaaatattaaataaaattgagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttcccaaagaaaaaaatatgaaaattttaaaaaatatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat Intra-Species Hit: Count: 1 Min: 1 Max: 804 Len: 804 Subject: NC_002967_TDE0949_TDE0950|enolase:hypothetical protein|POSITIVE:NEGATIVE|[973452,974255]|804 HSP 1 e-value: 0.0 bit: 1031.0 Len: 520 Query Start:285 Query End:804 Subject Strand: POSITIVE Subject Start: 285 Subject End: 804 ............................................................................................................................................................................................................................................................................................tatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat ............................................................................................................................................................................................................................................................................................tatatgaagtcgaatggatggtcagaagttaattatgatcctgattttcgtgatattcttgaaactatatattatcttgtgtatcaacaacctccaaaacgtggagtaatatcctgtcattactatgaagttgataatattactttgcactttataagtgatgtaagcagacctgatgatcctaattttatgatatggttccatataacgcatgaaggtaaaagacattattttatgaaaataaattatatgttagaagttgttgatacatatacttctgacttatatgatatcaatggtaattttataaaggaagagacacgtaaaatattttattaaattgttgtataaaatcgaatatacaatttgacaatatttttacaaaaaattattgaattgagataaatgatgaaatgaaagtagaggtttgcatttattcacagcttaactatctcccccggacagcgattgaaaccttacggagaactatggacatgcgagtcaaaaacttttaaggaat HSP 2 e-value: 4.0E-69 bit: 264.0 Len: 133 Query Start:123 Query End:255 Subject Strand: POSITIVE Subject Start: 123 Subject End: 255 ..........................................................................................................................gagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttccc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................gagatgtgattttgagtttttattatagttacaggtataaataatatgggagataaaaaagtgagaaagaaatttagtttgctattaattgttgtgttaggatttatgattatttcatgctctacattttccc..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-40 bit: 168.0 Len: 85 Query Start:1 Query End:85 Subject Strand: POSITIVE Subject Start: 1 Subject End: 85 aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aaggatatagacttttaaccggcatggtttatcaaagccttgccggatttttattatatggggattgtatatttttataggagag............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGGAUAUAGACUUUUAACCGGCAUGGUUUAUCAAAGCCUUGCCGGAUUUUUAUUAUAUGGGGAUUGUAUAUUUUUAUAGGAGAGAAUAAAAAUUAAAACAAUUUAAAUAUUAAAUAAAAUUGAGAUGUGAUUUUGAGUUUUUAUUAUAGUUACAGGUAUAAAUAAUAUGGGAGAUAAAAAAGUGAGAAAGAAAUUUAGUUUGCUAUUAAUUGUUGUGUUAGGAUUUAUGAUUAUUUCAUGCUCUACAUUUUCCCAAAGAAAAAAAUAUGAAAAUUUUAAAAAAUAUAUGAAGUCGAAUGGAUGGUCAGAAGUUAAUUAUGAUCCUGAUUUUCGUGAUAUUCUUGAAACUAUAUAUUAUCUUGUGUAUCAACAACCUCCAAAACGUGGAGUAAUAUCCUGUCAUUACUAUGAAGUUGAUAAUAUUACUUUGCACUUUAUAAGUGAUGUAAGCAGACCUGAUGAUCCUAAUUUUAUGAUAUGGUUCCAUAUAACGCAUGAAGGUAAAAGACAUUAUUUUAUGAAAAUAAAUUAUAUGUUAGAAGUUGUUGAUACAUAUACUUCUGACUUAUAUGAUAUCAAUGGUAAUUUUAUAAAGGAAGAGACACGUAAAAUAUUUUAUUAAAUUGUUGUAUAAAAUCGAAUAUACAAUUUGACAAUAUUUUUACAAAAAAUUAUUGAAUUGAGAUAAAUGAUGAAAUGAAAGUAGAGGUUUGCAUUUAUUCACAGCUUAACUAUCUCCCCCGGACAGCGAUUGAAACCUUACGGAGAACUAUGGACAUGCGAGUCAAAAACUUUUAAGGAAU ...((((.((((((....((((((.(((((....))))).))))))..(((((((((((..(((((((..((((((((........))))))))....)))))))..))))..)))))))...............)))))).))))...(((...((............((((((((....((..(.(((....)))...)..)).......((((((.((((...(((((.....)))))((((((.((((((........(((((......))))).((((.(((.(((.((((.(((...((((((((((..(((((((.........))))))).......................((((((((((((((.((......(..(((((((((..(((((..(((....)))))))))))))))))..)..((((((((((((((......((((.(((..............(((((....)))))....)))..)))).....)))))).))))))))................)).)))))))))))))).))))))))))))).)))).)))...))).)))).....))))))...........((((((((((....((((((((........))))))))....(((((.((((....)))).)))))............))))))))))...)))))).......))))..)))))).....)))))))))).)))...........(((((.((((.......(((......))).....)))))))))... (-171.17) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUCCUUAAAAGUUUUUGACUCGCAUGUCCAUAGUUCUCCGUAAGGUUUCAAUCGCUGUCCGGGGGAGAUAGUUAAGCUGUGAAUAAAUGCAAACCUCUACUUUCAUUUCAUCAUUUAUCUCAAUUCAAUAAUUUUUUGUAAAAAUAUUGUCAAAUUGUAUAUUCGAUUUUAUACAACAAUUUAAUAAAAUAUUUUACGUGUCUCUUCCUUUAUAAAAUUACCAUUGAUAUCAUAUAAGUCAGAAGUAUAUGUAUCAACAACUUCUAACAUAUAAUUUAUUUUCAUAAAAUAAUGUCUUUUACCUUCAUGCGUUAUAUGGAACCAUAUCAUAAAAUUAGGAUCAUCAGGUCUGCUUACAUCACUUAUAAAGUGCAAAGUAAUAUUAUCAACUUCAUAGUAAUGACAGGAUAUUACUCCACGUUUUGGAGGUUGUUGAUACACAAGAUAAUAUAUAGUUUCAAGAAUAUCACGAAAAUCAGGAUCAUAAUUAACUUCUGACCAUCCAUUCGACUUCAUAUAUUUUUUAAAAUUUUCAUAUUUUUUUCUUUGGGAAAAUGUAGAGCAUGAAAUAAUCAUAAAUCCUAACACAACAAUUAAUAGCAAACUAAAUUUCUUUCUCACUUUUUUAUCUCCCAUAUUAUUUAUACCUGUAACUAUAAUAAAAACUCAAAAUCACAUCUCAAUUUUAUUUAAUAUUUAAAUUGUUUUAAUUUUUAUUCUCUCCUAUAAAAAUAUACAAUCCCCAUAUAAUAAAAAUCCGGCAAGGCUUUGAUAAACCAUGCCGGUUAAAAGUCUAUAUCCUU ..........(((((((((((.(((((...........((....))..((((..(((..(((((((((((((..(((.((.(((.((((............(((((((((..(((((.((((((..(((((.((((....)))).))))).....(((((((........)))))))...(((((.(((((((.......(((......................((....)).....(((((((((...((((((((((((((((((..(((((.....(((((((.(((.(((...........)))..))).)))))))................(((((....)))))...........)))))..(((...(((((((((.((((((....)))..)))...))))))))).)))...))))))))))))))))))...(((.........((((...........))))......))).......))))))))).........))).....))))))))))))..................)))))))))))..))).))))))............................(((....))).))))..))).)))))..))))))))).((((((((((....))))..))))))......................(((((((..((((....(((((....((((((((........))))))))..)))))....)))))))))))..))))...))).)))).....))))).))))))))).))........ (-141.36) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 306 779 737 191 151 NC_002967:TDE0991|5end_ribosomal_protein_L28_1018065..1018295_NEGATIVE 293 50 20 52 17 NC_002967:TDE0740|5end_hypothetical_protein_775987..776217_POSITIVE 289 53 15 98 63 NC_002967:TDE2548|5end_hypothetical_protein_2573198..2573428_NEGATIVE 289 45 16 30 1 NC_002967:TDE2052|5end_aminotransferase,_class_V_2080402..2080632_POSITIVE 288 787 749 170 127 NC_002967:TDE2133|5end_cobalt_transport_protein,_putative_2164323..2164553_NEGATIVE 284 46 20 109 86 NC_002967:TDE1139|5end_hypothetical_protein_1168615..1168845_NEGATIVE 280 57 20 227 179 NC_002967:TDE1214|5end_flagellar_basal_body_protein_1246307..1246537_POSITIVE 276 47 17 36 2 NC_002967:TDE1499|5end_adenylosuccinate_lyase,_putative_1545266..1545496_POSITIVE 273 768 722 57 9 NC_002967:TDE0464|5end_NifU_domain_protein_518175..518405_NEGATIVE 273 46 17 51 16 NC_002967:TDE0078|5end_glycine_reductase_complex_selenoprotein_GrdB1_90076..90306_NEGATIVE 271 51 20 65 25 NC_002967:TDE2178|5end_hypothetical_protein_2208758..2208988_NEGATIVE 270 58 12 125 79 NC_002967:TDE2028|5end_OmpA_family_protein_2052923..2053153_POSITIVE 270 70 24 80 32 NC_002967:TDE1726|5end_polyA_polymerase_family_protein_1779546..1779776_POSITIVE 269 750 702 224 168 NC_002967:TDE1153|5end_hypothetical_protein_1190858..1191088_NEGATIVE 268 748 702 71 13 NC_002967:TDE0999|5end_formate/nitrite_transporter_1025870..1026100_POSITIVE 267 90 43 189 136 NC_002967:TDE0009|5end_hypothetical_protein_14545..14775_NEGATIVE 265 46 19 113 85 NC_002967:TDE2616|5end_cyclic_nucleotide-binding_protein_2658339..2658569_NEGATIVE 264 47 3 167 122 NC_002967:TDE2779|5end_hypothetical_protein_2830425..2830655_NEGATIVE 264 782 742 82 36 NC_002967:TDE2766|5end_motility_protein_A_2820874..2821104_NEGATIVE 264 83 41 129 74 NC_002967:TDE0692|5end_hypothetical_protein_729712..729942_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 288 769 735 34 3 NC_002967:TDE2715|3end_hypothetical_protein_2772936..2773086_POSITIVE 282 46 19 72 45 NC_002967:TDE0949|3end_enolase_973391..973541_POSITIVE 274 749 705 130 79 NC_002967:TDE0350|3end_MATE_efflux_family_protein_395019..395169_POSITIVE 274 43 9 74 39 NC_002967:TDE0009|3end_hypothetical_protein_13724..13874_NEGATIVE 272 46 2 127 72 NC_002967:TDE2609|3end_MiaB-like_tRNA_modifying_enzyme_YliG,_TIGR01125_2651904..2652054_POSITIVE 270 58 12 120 74 NC_002967:TDE2027|3end_hypothetical_protein_2052998..2053148_POSITIVE 265 46 19 109 81 NC_002967:TDE2617|3end_cyclic_nucleotide-binding_protein_2658343..2658493_NEGATIVE 265 50 1 122 76 NC_002967:TDE1487|3end_conserved_hypothetical_protein_TIGR01033_1531528..1531678_POSITIVE 265 55 20 80 45 NC_002967:TDE0933|3end_acetate_kinase_959336..959486_POSITIVE 264 47 3 84 39 NC_002967:TDE2780|3end_hypothetical_protein_2830508..2830658_NEGATIVE 264 782 742 60 14 NC_002967:TDE2767|3end_flagellar_protein-related_protein_2820896..2821046_NEGATIVE 264 83 41 65 10 NC_002967:TDE0691|3end_ABC_transporter,_ATP-binding/permease_protein_729728..729878_POSITIVE 259 44 2 98 60 NC_002967:TDE2542|3end_antigen,_putative_2569441..2569591_NEGATIVE 258 343 309 109 76 NC_002967:TDE2015|3end_lipoprotein,_putative_2036411..2036561_NEGATIVE 257 47 11 39 5 NC_002967:TDE2254|3end_hypothetical_protein_2291445..2291595_NEGATIVE 254 789 743 108 42 NC_002967:TDE2515|3end_hypothetical_protein_2540972..2541122_NEGATIVE 253 79 34 95 56 NC_002967:TDE2204|3end_Na+/H+_antiporter_family_protein_2242550..2242700_POSITIVE 253 789 743 108 42 NC_002967:TDE0945|3end_hypothetical_protein_968320..968470_POSITIVE 252 60 11 76 34 NC_002967:TDE1241|3end_HD_domain_protein_1274652..1274802_POSITIVE 252 46 19 32 9 NC_002967:TDE0079|3end_DNA-binding_protein_90095..90245_NEGATIVE