Origin IGS: gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aaaaattctccttaaatataataatttttaatcgttgagacagaaccccatctcaacgattagctatgctaccctatattaaggactaggactttctggatctttctttcctgaaccaggcctaggaggtcgtattattttacccccacctccttcatcaggcaatggacatgaaggatctttacctttttgcggcccattatcacctgctcctccctcaaccatcagcatctctctttcagacactatatttaatcttaacatacttttgtaatctgtcaagtgtttcttttggaaatttgcaatttgtatttttttaataaccgcaaggaacgcaaagggaaaagattattaagaaaaaccgtaggtttgtcttaatgacaatccatacctctaacttaggggagatttttaagaggggagctaaaaaatgttcccctcttaaatggcgttttgaaaagatgaggggttataggggagaagaaaaacttttgctccatcaaaagtttgtcctctccc Mask Tandem Repeat Region ================================================ gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Find is-nt database================================================ Query_seq: TDE0722:TDE0723|TDE0722:TDE0723:lipoprotein, putative:hypothetical protein:->->:759925..760443 519 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE0722:TDE0723|TDE0722:TDE0723:lipoprotein, putative:hypothetical protein:->->:759925..760443 519 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE0722:TDE0723|TDE0722:TDE0723:lipoprotein, putative:hypothetical protein:->->:759925..760443 519 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 17 End: 118 ................ M M E Q K F F F S P I T P H L F K T P F K R G T F F S S P L K N L P ................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 57 End: 200 ........................................................ M F S K R H L R G E H F L A P L L K I S P K L E V W I V I K T N L R F F L I I F S L C V P C G Y ............................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 199 End: 438 ...................................................................................................................................................................................................... M K K I Q I A N F Q K K H L T D Y K S M L R L N I V S E R E M L M V E G G A G D N G P Q K G K D P S C P L P D E G G G G ................................................................................. Protein_Len: 46 Strand: - Start: 249 End: 386 ........................................................................................................................................................................................................................................................ L L I N L N F I T D S L S I S I T S P P A P S L P G C F P L S G E H G N G S S P P P P L I M ..................................................................................................................................... Protein_Len: 51 Strand: - Start: 203 End: 355 .......................................................................................................................................................................................................... F F V F Q L N G F S V S S L N C F Y T L I L Y L T Q F L S A S P Q P L L L H Y H A A F L Y L D K M D M .................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 145 End: 246 ................................................................................................................................................ S L G V T K R L L R K G K R E K R N N F F Y L N C I E L L F V Q C M ................................................................................................................................................................................................................................................................................. Protein_Len: 57 Strand: - Start: 2 End: 172 . S L V F K Q H L L L K E E G R Y G R M K E F R W K L P S C K K A G R K F I E G L N S T H I T M L V F R R N K K I M ........................................................................................................................................................................................................................................................................................................................................................... gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 86 Start: 354 End: 383 .................................................................................................................................................................................................................................................................................................................................................................ATTGCCTGATGAAGGAGGTGGGGGTAAAAT........................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 56 HP_score: -3.3 Tail_Score: -4.08767 Start: 69 End: 114 Full_Region: cctctaacttagggg agatttttaagaggggagc taaaaaat gttcccctcttaaatggcg ttttgaaaagatgag ....................................................................agatttttaagaggggagctaaaaaatgttcccctcttaaatggcg..................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 68 HP_score: -8.3 Tail_Score: -3.09681 Start: 79 End: 104 Full_Region: aggggagatttttaa gaggggagc taaaaaat gttcccctc ttaaatggcgttttg ..............................................................................gaggggagctaaaaaatgttcccctc............................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -7.9 Tail_Score: -3.78026 Start: 139 End: 171 Full_Region: TAGAGGTATGGATTG TCATTAAGACAAACC TAC GGTTTTTCTTAATAA TCTTTTCCCTTTGCG ..........................................................................................................................................TCATTAAGACAAACCTACGGTTTTTCTTAATAA............................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 72 HP_score: -9.6 Tail_Score: -2.96755 Start: 142 End: 168 Full_Region: AGGTATGGATTGTCA TTAAGACAAACC TAC GGTTTTTCTTAA TAATCTTTTCCCTTT .............................................................................................................................................TTAAGACAAACCTACGGTTTTTCTTAA............................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TDE0722:TDE0723|TDE0722:TDE0723:lipoprotein, putative:hypothetical protein:->->:759925..760443 519 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Intra-Species Hit: Count: 5 Min: 1 Max: 519 Len: 519 Subject: NC_002967_TDE0722_TDE0723|lipoprotein, putative:hypothetical protein|POSITIVE:POSITIVE|[759925,760443]|519 HSP 1 e-value: 0.0 bit: 987.0 Len: 519 Query Start:1 Query End:519 Subject Strand: POSITIVE Subject Start: 1 Subject End: 519 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattnnnnnnntacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgttccttgcggttattaaaaaaatacaaattgcaaatttccaaaagaaacacttgacagattacaaaagtatgttaagattaaatatagtgtctgaaagagagatgctgatggttgagggaggagcaggtgataatgggccgcaaaaaggtaaagatccttcatgtccattgcctgatgaaggaggtgggggtaaaataatacgacctcctaggcctggttcaggaaagaaagatccagaaagtcctagtccttaatatagggtagcatagctaatcgttgagatggggttctgtctcaacgattaaaaattattatatttaaggagaattttt Subject: NC_002967_TDE0715_TDE0716|hypothetical protein:CAAX amino terminal protease family protein|POSITIVE:POSITIVE|[750611,750967]|357 HSP 1 e-value: 6.0E-92 bit: 339.0 Len: 179 Query Start:8 Query End:186 Subject Strand: POSITIVE Subject Start: 8 Subject End: 186 .......gacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcg............................................................................................................................................................................................................................................................................................................................................. .......gacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaacattttttagctcccctcttaaaaatctcccctgatttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcg............................................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE0724_TDE0725|hypothetical protein:exopolysaccharide biosynthesis protein|POSITIVE:POSITIVE|[763298,763604]|307 HSP 1 e-value: 3.0E-84 bit: 313.0 Len: 188 Query Start:1 Query End:188 Subject Strand: POSITIVE Subject Start: 1 Subject End: 190 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaaga-ggggaacattttttag-ctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgcgtt........................................................................................................................................................................................................................................................................................................................................... gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagagggggaacattttttagccccccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctgcggtttttcttaataatcttttcgcttggcgtt........................................................................................................................................................................................................................................................................................................................................... Subject: NC_002967_TDE0723_TDE0724|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[761722,761992]|271 HSP 1 e-value: 1.0E-68 bit: 262.0 Len: 162 Query Start:21 Query End:182 Subject Strand: POSITIVE Subject Start: 1 Subject End: 163 ....................tggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagagggg-aacattttttagct-cccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctt................................................................................................................................................................................................................................................................................................................................................. ....................tggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagaggggaaacattttttagctccccctcttaaaaatctcccctaagtta-aggtgtggattatcattaagacaaacctacggtttttcttaataatcttttccctt................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002967_TDE0969_TDE0970|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[994636,994908]|273 HSP 1 e-value: 8.0E-45 bit: 182.0 Len: 100 Query Start:86 Query End:185 Subject Strand: POSITIVE Subject Start: 170 Subject End: 269 .....................................................................................acattttttagctcccctcttaaaaatctcccctaagttagaggtatggattgtcattaagacaaacctacggtttttcttaataatcttttccctttgc.............................................................................................................................................................................................................................................................................................................................................. .....................................................................................acattttttagctcccctcttaaaaatctcccctaagttagaggcatggattgtcattaagacaaacctgcggtttttcttaataatcttttccctttgc.............................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-40 bit: 167.0 Len: 84 Query Start:1 Query End:84 Subject Strand: POSITIVE Subject Start: 1 Subject End: 84 gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagagggg................................................................................................................................................................................................................................................................................................................................................................................................................................................... gggagaggacaaacttttgatggagcaaaagtttttcttctcccctataacccctcatcttttcaaaacgccatttaagagggg................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGGAGAGGACAAACUUUUGAUGGAGCAAAAGUUUUUCUUCUCCCCUAUAACCCCUCAUCUUUUCAAAACGCCAUUUAAGAGGGGAACAUUUUUUAGCUCCCCUCUUAAAAAUCUCCCCUAAGUUAGAGGUAUGGAUUGUCAUUAAGACAAACCUACGGUUUUUCUUAAUAAUCUUUUCCCUUUGCGUUCCUUGCGGUUAUUAAAAAAAUACAAAUUGCAAAUUUCCAAAAGAAACACUUGACAGAUUACAAAAGUAUGUUAAGAUUAAAUAUAGUGUCUGAAAGAGAGAUGCUGAUGGUUGAGGGAGGAGCAGGUGAUAAUGGGCCGCAAAAAGGUAAAGAUCCUUCAUGUCCAUUGCCUGAUGAAGGAGGUGGGGGUAAAAUAAUACGACCUCCUAGGCCUGGUUCAGGAAAGAAAGAUCCAGAAAGUCCUAGUCCUUAAUAUAGGGUAGCAUAGCUAAUCGUUGAGAUGGGGUUCUGUCUCAACGAUUAAAAAUUAUUAUAUUUAAGGAGAAUUUUU (((((((((.(((((((((......))))))))).))))))))).....(((((.((((((((((...((((.((((((((((((.(........).))))))))))))..((((((....((.(((((...(((((((...(((((.(((((...))))).))))))))))))....))))))).....((((((((..............))))))))....(((.........(((((((.(((.....))).)))))))........((((((((.......)))))))).)))....))))))....)))).((((((((......((((.......))))...)))))))).....)))).)))))))))))................(((((.((..(((.(((........))).))))).)))))(((((((.(((..((((......(((((((((((((((....)))))))))))))))....))))..))))))))))........ (-160.34) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAAUUCUCCUUAAAUAUAAUAAUUUUUAAUCGUUGAGACAGAACCCCAUCUCAACGAUUAGCUAUGCUACCCUAUAUUAAGGACUAGGACUUUCUGGAUCUUUCUUUCCUGAACCAGGCCUAGGAGGUCGUAUUAUUUUACCCCCACCUCCUUCAUCAGGCAAUGGACAUGAAGGAUCUUUACCUUUUUGCGGCCCAUUAUCACCUGCUCCUCCCUCAACCAUCAGCAUCUCUCUUUCAGACACUAUAUUUAAUCUUAACAUACUUUUGUAAUCUGUCAAGUGUUUCUUUUGGAAAUUUGCAAUUUGUAUUUUUUUAAUAACCGCAAGGAACGCAAAGGGAAAAGAUUAUUAAGAAAAACCGUAGGUUUGUCUUAAUGACAAUCCAUACCUCUAACUUAGGGGAGAUUUUUAAGAGGGGAGCUAAAAAAUGUUCCCCUCUUAAAUGGCGUUUUGAAAAGAUGAGGGGUUAUAGGGGAGAAGAAAAACUUUUGCUCCAUCAAAAGUUUGUCCUCUCCC ........(((((((.((((...((..(((((((((((((..(....)..)))))))))))))..)).......))))))))))).((.((((((((((..(((((......)))..))..)))))))))).)).(((...(((((((..((((((((((.....))...)))))))).......(((((((..(((((((...........((((((..............((((((...((((.((((...................))))...))))..((((((((((((((((..(((.....)))..))))))).......))))))))).)))))).....(((((((((.(((((...))))).)))))))))....................)))))).....((((((((((((........))))))))))))))))).))..))))))).)).))))).))).((((((.((.(((((((((......))))))))).)).)))))) (-148.92) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 436 71 34 213 170 NC_002967:TDE2097|5end_hypothetical_protein_2124741..2124971_NEGATIVE 393 79 34 226 179 NC_002967:TDE2024|5end_hypothetical_protein_2051021..2051251_NEGATIVE 384 46 1 60 15 NC_002967:TDE0402|5end_hypothetical_protein_454352..454582_NEGATIVE 384 46 1 182 137 NC_002967:TDE0401|5end_adenylate/guanylate_cyclase_catalytic_domain_protein_454230..454460_NEGATIVE 381 83 41 200 160 NC_002967:TDE1982|5end_hypothetical_protein_1992984..1993214_NEGATIVE 367 73 31 180 137 NC_002967:TDE0741|5end_hypothetical_protein_778158..778388_NEGATIVE 362 199 172 205 176 NC_002967:TDE2436|5end_hypothetical_protein_2466602..2466832_POSITIVE 359 85 41 118 76 NC_002967:TDE2265|5end_hypothetical_protein_2302165..2302395_POSITIVE 358 84 41 208 169 NC_002967:TDE2735|5end_surface_antigen,_putative_2790154..2790384_POSITIVE 350 376 334 124 87 NC_002967:TDE0759|5end_hypothetical_protein_799499..799729_NEGATIVE 348 336 291 62 14 NC_002967:TDE2543|5end_hypothetical_protein_2570950..2571180_NEGATIVE 348 336 291 186 138 NC_002967:TDE2542|5end_antigen,_putative_2570826..2571056_NEGATIVE 339 328 282 51 1 NC_002967:TDE2710|5end_MATE_efflux_family_protein_2766530..2766760_POSITIVE 337 84 41 102 62 NC_002967:TDE1892|5end_hypothetical_protein_1912065..1912295_POSITIVE 334 63 22 220 182 NC_002967:TDE0570|5end_hypothetical_protein_600169..600399_POSITIVE 330 340 295 173 126 NC_002967:TDE2571|5end_hypothetical_protein_2598152..2598382_NEGATIVE 328 220 180 135 94 NC_002967:TDE2311|5end_hypothetical_protein_2348238..2348468_POSITIVE 328 345 310 228 184 NC_002967:TDE1392|5end_hypothetical_protein_1432002..1432232_POSITIVE 326 49 1 170 126 NC_002967:TDE1058|5end_hypothetical_protein_1086366..1086596_NEGATIVE 321 327 284 202 146 NC_002967:TDE1500|5end_hypothetical_protein_1548070..1548300_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 471 47 1 93 47 NC_002967:TDE0969|3end_hypothetical_protein_994575..994725_POSITIVE 471 47 1 93 47 NC_002967:TDE0724|3end_hypothetical_protein_763237..763387_POSITIVE 471 47 1 93 47 NC_002967:TDE0722|3end_lipoprotein,_putative_759864..760014_POSITIVE 468 46 1 51 7 NC_002967:TDE0664|3end_OmpA_family_protein_699728..699878_POSITIVE 402 47 1 93 47 NC_002967:TDE0715|3end_hypothetical_protein_750550..750700_POSITIVE 383 45 1 83 43 NC_002967:TDE2420|3end_DNA-directed_RNA_polymerase_beta'_subunit_2444960..2445110_NEGATIVE 375 198 151 114 77 NC_002967:TDE2261|3end_hypothetical_protein_2297915..2298065_NEGATIVE 373 196 155 117 82 NC_002967:TDE0974|3end_hypothetical_protein_998875..999025_POSITIVE 369 45 1 82 41 NC_002967:TDE0665|3end_pyruvate_ferredoxin/flavodoxin_oxidoreductase_family_protein_699792..699942_NEGATIVE 359 50 1 143 95 NC_002967:TDE2025|3end_hypothetical_protein_2051075..2051225_NEGATIVE 348 336 291 77 29 NC_002967:TDE2544|3end_hypothetical_protein_2570935..2571085_NEGATIVE 337 219 180 79 42 NC_002967:TDE1977|3end_hypothetical_protein_1991348..1991498_POSITIVE 334 63 22 133 95 NC_002967:TDE0569|3end_hypothetical_protein_600162..600312_POSITIVE 328 220 180 73 32 NC_002967:TDE2310|3end_hypothetical_protein_2348256..2348406_POSITIVE 322 339 291 73 27 NC_002967:TDE0696|3end_hypothetical_protein_734210..734360_POSITIVE 318 84 41 68 29 NC_002967:TDE1059|3end_hypothetical_protein_1086498..1086648_NEGATIVE 317 410 364 68 26 NC_002967:TDE1451|3end_hypothetical_protein_1497850..1498000_NEGATIVE 316 359 313 130 85 NC_002967:TDE2460|3end_aminotransferase,_class_V_2487229..2487379_POSITIVE 315 64 24 108 69 NC_002967:TDE0157|3end_KHG/KDPG_family_aldolase/carbohydrate_kinase,_PfkB_family_185711..185861_POSITIVE 314 406 366 91 57 NC_002967:TDE2582|3end_GGDEF_domain_protein_2616164..2616314_POSITIVE