Origin IGS:
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
gcgtttttctatcattatttacattatagcccgtttttatgcggatttcaatgttttttttttaaatatacgggcatcttgctgcgttgcttcaaaaaaaaacaatcctcgacgtatcagtaccgccaggatggcggtggctccaagcagaatcgagttcgcactgcgaactcgcagctaaagaatgaacacggacgttcattctttagcgtgcctgcgggtgtttttttcttgcgccttgaatctgctccgcctatttgcaaaagtgctcatactatataaccgcaaagatgctaagagcgcaaaggaatttttaatgatgttttgatgacatatcctttcatttacccttggcgggcttggcggttttttttgaatctgcgctgctggaaaagtcctgttgtcccaagtcagaaatatcgctgtttctcggaaaagttctgcatcaggggtgttgattacatcataaattagtatctcgtttttt

Mask Tandem Repeat Region ================================================
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc

Find is-nt database================================================
Query_seq: TDE0568:TDE0569|TDE0568:TDE0569:hypothetical protein:hypothetical protein:->->:599289..599775 487
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TDE0568:TDE0569|TDE0568:TDE0569:hypothetical protein:hypothetical protein:->->:599289..599775 487
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TDE0568:TDE0569|TDE0568:TDE0569:hypothetical protein:hypothetical protein:->->:599289..599775 487
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Predict ORF larger than 30AA ================================================
Protein_Len: 60	Strand: +	Start: 11	End: 286
.......... M  L  I  Y  D  V  I  N  T  P  D  A  E  L  F  R  E  T  A  I  F  L  T  W  D  N  R  T  F  P  A  A  Q  I  Q  K  K  P  P  S  P  P  R  V  N  E  R  I  C  H  Q  N  I  I  K  N  S  F  A  L .........................................................................................................................................................................................................
Protein_Len: 48	Strand: +	Start: 225	End: 368
................................................................................................................................................................................................................................ M  Q  I  G  G  A  D  S  R  R  K  K  K  T  P  A  G  T  L  K  N  E  R  P  C  S  F  F  S  C  E  F  A  V  R  T  R  F  C  L  E  P  P  P  S  W  R  Y .......................................................................................................................
Protein_Len: 36	Strand: +	Start: 286	End: 393
............................................................................................................................................................................................................................................................................................. M  N  V  R  V  H  S  L  A  A  S  S  Q  C  E  L  D  S  A  W  S  H  R  H  P  G  G  T  D  T  S  R  I  V  F  F ..............................................................................................
Protein_Len: 46	Strand: +	Start: 311	End: 448
...................................................................................................................................................................................................................................................................................................................... M  R  V  R  S  A  N  S  I  L  L  G  A  T  A  I  L  A  V  L  I  R  R  G  L  F  F  F  E  A  T  Q  Q  D  A  R  I  F  K  K  K  T  L  K  S  A .......................................
Protein_Len: 56	Strand: -	Start: 310	End: 477
..................................................................................................................................................................................................................................................................................................................... S  R  T  R  L  A  F  E  I  R  S  P  A  V  A  M  R  A  T  S  I  R  R  P  N  N  K  K  S  A  V  C  C  S  A  R  I  N  L  F  F  V  N  F  D  A  Y  F  R  A  I  I  Y  I  I  M ..........
Protein_Len: 40	Strand: -	Start: 303	End: 422
.............................................................................................................................................................................................................................................................................................................. E  K  A  A  L  E  C  H  S  S  S  E  A  Q  L  W  R  W  G  P  P  V  S  V  D  L  I  T  K  K  Q  L  L  A  A  L  H  G  Y  M .................................................................
Protein_Len: 60	Strand: -	Start: 209	End: 412
................................................................................................................................................................................................................ P  P  A  S  E  L  R  L  F  F  V  G  A  P  V  S  F  F  S  R  G  H  E  N  K  L  Q  S  N  A  T  R  V  R  N  Q  K  S  G  G  G  D  Q  R  Y  Q  Y  T  S  S  Q  K  K  K  F  C  R  L  L  M ...........................................................................
Protein_Len: 47	Strand: -	Start: 163	End: 303
.................................................................................................................................................................. F  M  M  L  F  E  K  A  S  K  A  D  K  R  N  Y  L  I  L  V  K  A  F  L  R  L  L  N  L  A  C  S  F  F  V  R  L  C  A  L  S  H  V  D  T  N  M ........................................................................................................................................................................................
Protein_Len: 41	Strand: -	Start: 33	End: 155
................................ C  G  Q  H  L  V  K  G  L  F  L  S  I  E  S  K  P  C  C  S  K  E  L  L  A  S  E  F  F  V  A  L  G  A  L  P  L  H  F  S  M ............................................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: -	Start: 22	End: 111
..................... S  T  I  L  V  G  S  A  S  S  K  R  S  V  A  I  N  R  V  Q  S  L  L  V  K  G  A  A  C  M ........................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 54	Strand: -	Start: 17	End: 178
................ N  I  I  Y  D  V  G  R  I  C  F  K  E  S  F  C  R  Y  K  Q  S  P  V  V  P  S  K  W  C  R  L  N  L  F  F  R  W  A  R  W  P  Y  I  F  P  Y  T  M  L  V  D  N  F  M .....................................................................................................................................................................................................................................................................................................................

aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 88	Start: 436	End: 465
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAATCCGCATAAAAACGGGCTATAAT......................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 63	HP_score: -3.1	Tail_Score: -4.54306	Start: 267	End: 323	Full_Region: gaatcgagttcgcac tgcgaactcgcagctaaagaatgaac acggac gttcattctttagcgtgcctgcggg tgtttttttcttgcg
..........................................................................................................................................................................................................................................................................tgcgaactcgcagctaaagaatgaacacggacgttcattctttagcgtgcctgcggg....................................................................................................................................................................
TransTerm Strand: +	Conf: 70	HP_score: -8.1	Tail_Score: -3.65827	Start: 284	End: 305	Full_Region: CGCAGGCACGCTAAA GAATGAACG TCCG TGTTCATTC TTTAGCTGCGAGTTC
...........................................................................................................................................................................................................................................................................................GAATGAACGTCCGTGTTCATTC......................................................................................................................................................................................
TransTerm Strand: -	Conf: 68	HP_score: -7.4	Tail_Score: -3.61178	Start: 284	End: 305	Full_Region: gaactcgcagctaaa gaatgaac acggac gttcattc tttagcgtgcctgcg
...........................................................................................................................................................................................................................................................................................gaatgaacacggacgttcattc......................................................................................................................................................................................
TransTerm Strand: -	Conf: 56	HP_score: -3.3	Tail_Score: -3.94188	Start: 287	End: 302	Full_Region: ctcgcagctaaagaa tgaac acggac gttca ttctttagcgtgcct
..............................................................................................................................................................................................................................................................................................tgaacacggacgttca.........................................................................................................................................................................................
TransTerm Strand: +	Conf: 91	HP_score: -12.0	Tail_Score: -3.50853	Start: 313	End: 335	Full_Region: GTTCATTCTTTAGCT GCGAGTTCGC AGT GCGAACTCGA TTCTGCTTGGAGCCA
........................................................................................................................................................................................................................................................................................................................GCGAGTTCGCAGTGCGAACTCGA........................................................................................................................................................
TransTerm Strand: +	Conf: 100	HP_score: -15.5	Tail_Score: -2.70298	Start: 314	End: 334	Full_Region: TTCATTCTTTAGCTG CGAGTTCGC AGT GCGAACTCG ATTCTGCTTGGAGCC
.........................................................................................................................................................................................................................................................................................................................CGAGTTCGCAGTGCGAACTCG.........................................................................................................................................................

Find igs database================================================
Query_seq: TDE0568:TDE0569|TDE0568:TDE0569:hypothetical protein:hypothetical protein:->->:599289..599775 487
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
Intra-Species Hit: Count: 2	Min: 1	Max: 487	Len: 487
Subject: NC_002967_TDE0568_TDE0569|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[599289,599775]|487
HSP  1	e-value: 0.0	bit: 763.0	Len: 487	Query Start:1	Query End:487	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 487
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcnnnnnnnnccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagnnnnnnncacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgnnnnnnnnngaagcaacgcagcaagatgcccgtatatttnnnnnnnnnncattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc
aaaaaacgagatactaatttatgatgtaatcaacacccctgatgcagaacttttccgagaaacagcgatatttctgacttgggacaacaggacttttccagcagcgcagattcaaaaaaaaccgccaagcccgccaagggtaaatgaaaggatatgtcatcaaaacatcattaaaaattcctttgcgctcttagcatctttgcggttatatagtatgagcacttttgcaaataggcggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattgtttttttttgaagcaacgcagcaagatgcccgtatatttaaaaaaaaaacattgaaatccgcataaaaacgggctataatgtaaataatgatagaaaaacgc

Subject: NC_002967_TDE0975_TDE0976|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[999940,1000165]|226
HSP  1	e-value: 4.0E-62	bit: 240.0	Len: 150	Query Start:236	Query End:385	Subject Strand: POSITIVE	Subject Start: 9	Subject End: 158
...........................................................................................................................................................................................................................................cggagcagattcaaggcgcaagnnnnnnncacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattctgcttggagccaccgccatcctggcggtactgatacgtcgaggattg......................................................................................................
...........................................................................................................................................................................................................................................cggagcagattcaaggcgcaagaaaaaaacacccgcaggcacgctaaagaatgaacgtccgtgttcattctttagctgcgagttcgcagtgcgaactcgattttgcttggagccaccgccatcctggcggtactgatacgtcgaagattg......................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAAAAACGAGAUACUAAUUUAUGAUGUAAUCAACACCCCUGAUGCAGAACUUUUCCGAGAAACAGCGAUAUUUCUGACUUGGGACAACAGGACUUUUCCAGCAGCGCAGAUUCAAAAAAAACCGCCAAGCCCGCCAAGGGUAAAUGAAAGGAUAUGUCAUCAAAACAUCAUUAAAAAUUCCUUUGCGCUCUUAGCAUCUUUGCGGUUAUAUAGUAUGAGCACUUUUGCAAAUAGGCGGAGCAGAUUCAAGGCGCAAGAAAAAAACACCCGCAGGCACGCUAAAGAAUGAACGUCCGUGUUCAUUCUUUAGCUGCGAGUUCGCAGUGCGAACUCGAUUCUGCUUGGAGCCACCGCCAUCCUGGCGGUACUGAUACGUCGAGGAUUGUUUUUUUUUGAAGCAACGCAGCAAGAUGCCCGUAUAUUUAAAAAAAAAACAUUGAAAUCCGCAUAAAAACGGGCUAUAAUGUAAAUAAUGAUAGAAAAACGC
..............(((((..(((((((.(((......(((.(((.......(((((((...(((........))).))))))).....(((....))).)))...)))...............((((((..(((..((((.(((((...(((.....)))......))))).........(((((((.(((.(.((((((.((.((((...(((.((....)).)))..)))).)).)).)))).)))))))))))........))))...)))..(((((((((((((((....)))))))))))))))..(((((((((...))))))))).....))))))....((((((.....))))))..))))))))))..))))).(((((((((((...(((..((.....)).)))...))))))))))).((((((.(..(((........)))..).)))))).................... (-132.50)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
GCGUUUUUCUAUCAUUAUUUACAUUAUAGCCCGUUUUUAUGCGGAUUUCAAUGUUUUUUUUUUAAAUAUACGGGCAUCUUGCUGCGUUGCUUCAAAAAAAAACAAUCCUCGACGUAUCAGUACCGCCAGGAUGGCGGUGGCUCCAAGCAGAAUCGAGUUCGCACUGCGAACUCGCAGCUAAAGAAUGAACACGGACGUUCAUUCUUUAGCGUGCCUGCGGGUGUUUUUUUCUUGCGCCUUGAAUCUGCUCCGCCUAUUUGCAAAAGUGCUCAUACUAUAUAACCGCAAAGAUGCUAAGAGCGCAAAGGAAUUUUUAAUGAUGUUUUGAUGACAUAUCCUUUCAUUUACCCUUGGCGGGCUUGGCGGUUUUUUUUGAAUCUGCGCUGCUGGAAAAGUCCUGUUGUCCCAAGUCAGAAAUAUCGCUGUUUCUCGGAAAAGUUCUGCAUCAGGGGUGUUGAUUACAUCAUAAAUUAGUAUCUCGUUUUUU
(((.....(((...................((((......)))).......(((((((((((.......((((((.....))).)))......)))))))))))......((.(((((((((((.((.(((..((((.(((((((.((((...(((((((((...)))))))))..((((((((((((((......))))))))))))))..(((((((((((...(((..((((((((((.((((((...((......))...((((....))))........))..))))..)))).))))))..))).........(((((.....)))))...........)))))...))))))...((((.(((....))).)))).))))))))...)))))))..)))...(.(((((......(((.....))).....))))))....)))))))))).))).))......))).....)))..... (-143.02)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
629	280	231	100	51	NC_002967:TDE0827|5end_hypothetical_protein_848053..848283_NEGATIVE
565	420	372	228	182	NC_002967:TDE2010|5end_hypothetical_protein_2031318..2031548_POSITIVE
482	366	321	222	175	NC_002967:TDE1095|5end_alanine_racemase_1129826..1130056_POSITIVE
466	381	343	46	1	NC_002967:TDE2238|5end_hypothetical_protein_2276337..2276567_POSITIVE
459	340	294	210	165	NC_002967:TDE1935|5end_hypothetical_protein_1952994..1953224_POSITIVE
431	367	325	156	108	NC_002967:TDE2100|5end_hypothetical_protein_2125370..2125600_POSITIVE
430	169	121	197	128	NC_002967:TDE2315|5end_conserved_hypothetical_protein_TIGR00044_2352272..2352502_POSITIVE
429	333	291	213	167	NC_002967:TDE1612|5end_phosphoribosyl_transferase_domain_protein_1660549..1660779_POSITIVE
428	319	277	230	188	NC_002967:TDE1933|5end_hypothetical_protein_1952611..1952841_NEGATIVE
386	319	272	225	178	NC_002967:TDE0970|5end_hypothetical_protein_994769..994999_POSITIVE
383	349	302	197	127	NC_002967:TDE2640|5end_hypothetical_protein_2680034..2680264_POSITIVE
378	208	163	136	86	NC_002967:TDE0161|5end_hypothetical_protein_187829..188059_NEGATIVE
370	365	324	204	146	NC_002967:TDE2601|5end_surface_antigen,_putative_2638490..2638720_POSITIVE
370	340	291	69	11	NC_002967:TDE0353|5end_lipase/acylhydrolase,_GDSL_family_398338..398568_NEGATIVE
367	387	342	88	33	NC_002967:TDE1999|5end_DNA_polymerase_III_domain_protein_2017063..2017293_POSITIVE
366	359	311	65	19	NC_002967:TDE2505|5end_hypothetical_protein_2530125..2530355_POSITIVE
363	319	272	198	149	NC_002967:TDE2549|5end_methyl-accepting_chemotaxis_protein_2573285..2573515_POSITIVE
362	334	291	231	192	NC_002967:TDE0976|5end_hypothetical_protein_1000026..1000256_POSITIVE
361	355	311	70	22	NC_002967:TDE1629|5end_dihydrolipoamide_dehydrogenase_1678514..1678744_NEGATIVE
360	146	101	143	88	NC_002967:TDE2103|5end_glycosyl_transferase,_group_2_family_protein_2128393..2128623_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
565	420	372	77	31	NC_002967:TDE2009|3end_hypothetical_protein_2031247..2031397_POSITIVE
469	408	361	64	16	NC_002967:TDE2011|3end_hypothetical_protein_2033482..2033632_POSITIVE
458	377	331	52	5	NC_002967:TDE1094|3end_hypothetical_protein_1129722..1129872_POSITIVE
435	364	325	151	106	NC_002967:TDE2238|3end_hypothetical_protein_2276545..2276695_POSITIVE
427	318	274	52	4	NC_002967:TDE0975|3end_hypothetical_protein_999879..1000029_POSITIVE
418	348	301	135	88	NC_002967:TDE0616|3end_hypothetical_protein_650079..650229_POSITIVE
402	348	310	68	29	NC_002967:TDE1982|3end_hypothetical_protein_1992511..1992661_NEGATIVE
389	348	305	138	89	NC_002967:TDE0742|3end_hypothetical_protein_778450..778600_NEGATIVE
380	366	325	72	25	NC_002967:TDE2547|3end_hypothetical_protein_2573184..2573334_POSITIVE
380	369	321	81	26	NC_002967:TDE2312|3end_hypothetical_protein_2349049..2349199_POSITIVE
375	370	321	51	1	NC_002967:TDE2493|3end_hypothetical_protein_2516745..2516895_NEGATIVE
369	257	221	90	51	NC_002967:TDE0923|3end_ABC_transporter,_ATP-binding/permease_protein_943920..944070_NEGATIVE
367	387	342	88	33	NC_002967:TDE1998|3end_phosphohexose_mutase_family_protein_2017143..2017293_POSITIVE
365	375	338	89	44	NC_002967:TDE2482|3end_hypothetical_protein_2505822..2505972_POSITIVE
362	207	162	81	36	NC_002967:TDE1642|3end_hypothetical_protein_1692771..1692921_NEGATIVE
353	379	331	136	83	NC_002967:TDE0621|3end_MATE_efflux_family_protein_654776..654926_POSITIVE
351	385	341	100	52	NC_002967:TDE2736|3end_hypothetical_protein_2791702..2791852_NEGATIVE
345	207	166	142	96	NC_002967:TDE0769|3end_ribosomal_protein_L23_807998..808148_POSITIVE
344	370	321	124	75	NC_002967:TDE0977|3end_hypothetical_protein_1001640..1001790_POSITIVE
340	376	337	70	25	NC_002967:TDE2766|3end_motility_protein_A_2820095..2820245_NEGATIVE