Origin IGS:
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
acattctccaataatatctctaatttattttactataatacataaaaaataagaaaaagtcgataggaaggcaaatttatattttaattaaggaaaacgtttttatagaaaaataccctcaagccggatttttttttcgacgttgaggatatttttaaataatttgttcattttttacctcttgtaaaaattatttaactaaggaagaaaaattcccccttttcataattattgtacgaaaagtttgcaataaatagcaaaattctattgatttcaaactcaattagagaattgacctttcttctgttttaatctcgacttaaagaataaaatagaaactttttaataatgccggattccaaagggcggcaagccctttggcagcgcgagtacaaccagcgtagcttcgaggtaaaagagagggggttatagggggagagaaaaccctgctctgacttgaaaagcccgtaagggaacggggtgttctctccccctaaaccattgtattgacaaaaagataagacggctatataattaacaaattttgtcgagggagccccatt

Mask Tandem Repeat Region ================================================
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt

Find is-nt database================================================
Query_seq: TDE0469:TDE0470|TDE0469:TDE0470:hypothetical protein:cell division protein FtsH:<-->:524078..524640 563
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: TDE0469:TDE0470|TDE0469:TDE0470:hypothetical protein:cell division protein FtsH:<-->:524078..524640 563
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: TDE0469:TDE0470|TDE0469:TDE0470:hypothetical protein:cell division protein FtsH:<-->:524078..524640 563
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Predict ORF larger than 30AA ================================================
Protein_Len: 30	Strand: +	Start: 45	End: 134
............................................ M  F  L  S  I  Q  W  F  R  G  R  E  H  P  V  P  L  R  A  F  Q  V  R  A  G  F  S  L  P  L .............................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 36	Strand: +	Start: 134	End: 241
..................................................................................................................................... M  T  P  S  L  L  P  R  S  Y  A  G  C  T  R  A  A  K  G  L  A  A  L  W  N  P  A  L  L  K  S  F  Y  F  I  L ..................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 34	End: 252
................................. M  A  V  L  S  F  C  Q  Y  N  G  L  G  G  E  N  T  P  F  P  Y  G  L  F  K  S  E  Q  G  F  L  S  P  Y  N  P  L  S  F  T  S  K  L  R  W  L  Y  S  R  C  Q  R  A  C  R  P  L  E  S  G .......................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: +	Start: 281	End: 370
........................................................................................................................................................................................................................................................................................ M  S  L  K  S  I  E  F  C  Y  L  L  Q  T  F  R  T  I  I  M  K  R  G  N  F  S  S  L  V  K .................................................................................................................................................................................................
Protein_Len: 34	Strand: -	Start: 421	End: 522
.................................................................................................................................................................................................................................................................................................................................................................................................................................... R  R  F  F  F  G  A  Q  P  Y  K  E  I  F  V  N  E  K  I  L  I  Y  I  Q  R  G  I  S  K  K  K  N  K  M .........................................
Protein_Len: 32	Strand: -	Start: 310	End: 405
..................................................................................................................................................................................................................................................................................................................... K  N  C  V  K  R  V  I  I  I  F  L  P  F  K  E  E  K  T  L  Y  N  K  C  S  T  F  F  S  C  I  M ..............................................................................................................................................................

aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 91	Start: 29	End: 58
............................ATTGACAAAAAGATAAGACGGCTATATAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
PromScan Matrix: RpoD-17	Strand: +	Score: 82	Start: 489	End: 518
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCTTCCTATCGACTTTTTCTTATTTT.............................................
PromScan Matrix: RpoD-17	Strand: +	Score: 82	Start: 500	End: 529
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTTTTTCTTATTTTTTATGTATTAT..................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 47	HP_score: -2.0	Tail_Score: -3.64283	Start: 172	End: 214	Full_Region: AAGCTACGCTGGTTG TACTCGCGCTGCCAAAGGGC TTGCC GCCCTTTGGAATCCGGCA TTATTAAAAAGTTTC
...........................................................................................................................................................................TACTCGCGCTGCCAAAGGGCTTGCCGCCCTTTGGAATCCGGCA.............................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 41	HP_score: -2.8	Tail_Score: -2.66962	Start: 227	End: 262	Full_Region: gagaattgacctttc ttctgttttaatct cgacttaa agaataaaatagaa actttttaataatgc
..................................................................................................................................................................................................................................ttctgttttaatctcgacttaaagaataaaatagaa.............................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 65	HP_score: -2.1	Tail_Score: -4.96848	Start: 413	End: 450	Full_Region: CAAATTATTTAAAAA TATCCTCAACGTCGAA AAAAAAA TCCGGCTTGAGGGTA TTTTTCTATAAAAAC
............................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTCAACGTCGAAAAAAAAATCCGGCTTGAGGGTA.................................................................................................................

Find igs database================================================
Query_seq: TDE0469:TDE0470|TDE0469:TDE0470:hypothetical protein:cell division protein FtsH:<-->:524078..524640 563
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
Intra-Species Hit: Count: 3	Min: 1	Max: 563	Len: 563
Subject: NC_002967_TDE0469_TDE0470|hypothetical protein:cell division protein FtsH|NEGATIVE:POSITIVE|[524078,524640]|563
HSP  1	e-value: 0.0	bit: 1063.0	Len: 563	Query Start:1	Query End:563	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 563
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgnnnnnnnnntccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt
aatggggctccctcgacaaaatttgttaattatatagccgtcttatctttttgtcaatacaatggtttagggggagagaacaccccgttcccttacgggcttttcaagtcagagcagggttttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaagggcttgccgccctttggaatccggcattattaaaaagtttctattttattctttaagtcgagattaaaacagaagaaaggtcaattctctaattgagtttgaaatcaatagaattttgctatttattgcaaacttttcgtacaataattatgaaaagggggaatttttcttccttagttaaataatttttacaagaggtaaaaaatgaacaaattatttaaaaatatcctcaacgtcgaaaaaaaaatccggcttgagggtatttttctataaaaacgttttccttaattaaaatataaatttgccttcctatcgactttttcttattttttatgtattatagtaaaataaattagagatattattggagaatgt

Subject: NC_002967_TDE2259_TDE2260|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[2297328,2297477]|150
HSP  1	e-value: 5.0E-28	bit: 127.0	Len: 108	Query Start:83	Query End:190	Subject Strand: POSITIVE	Subject Start: 32	Subject End: 141
..................................................................................ccccgttcccttacgggcttttcaagtcagagcag-ggtt--ttctctccccctataaccccctctcttttacctcgaagctacgctggttgtactcgcgctgccaaaggg.....................................................................................................................................................................................................................................................................................................................................................................................
..................................................................................ccccgttcccttacgggcttttcaagtcagagcggtggttgtttccctccccctatgaccccctct-tttgacctcgaagctccgctggttgtactcgcgctgccaaaggg.....................................................................................................................................................................................................................................................................................................................................................................................

Subject: NC_002967_TDE2136_TDE2137|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[2165750,2166264]|515
HSP  1	e-value: 9.0E-11	bit: 69.9	Len: 78	Query Start:67	Query End:144	Subject Strand: NEGATIVE	Subject Start: 320	Subject End: 398
..................................................................ttagggggagagaacaccccgttcccttacgggcttttcaagtcaga-gcagggttttctctccccctataaccccctc...................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................................ttagggggagaggacaacttgttcccttacgggcttttcaggtcagacgcaagtttccctctccccctataaccccctc...................................................................................................................................................................................................................................................................................................................................................................................................................................
HSP  2	e-value: 6.0E-9	bit: 63.9	Len: 44	Query Start:300	Query End:343	Subject Strand: NEGATIVE	Subject Start: 45	Subject End: 88
...........................................................................................................................................................................................................................................................................................................aattttgctatttattgcaaacttttcgtacaataattatgaaa............................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................aattttactatttattgcaaactcttcatacaataattatgaaa............................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAUGGGGCUCCCUCGACAAAAUUUGUUAAUUAUAUAGCCGUCUUAUCUUUUUGUCAAUACAAUGGUUUAGGGGGAGAGAACACCCCGUUCCCUUACGGGCUUUUCAAGUCAGAGCAGGGUUUUCUCUCCCCCUAUAACCCCCUCUCUUUUACCUCGAAGCUACGCUGGUUGUACUCGCGCUGCCAAAGGGCUUGCCGCCCUUUGGAAUCCGGCAUUAUUAAAAAGUUUCUAUUUUAUUCUUUAAGUCGAGAUUAAAACAGAAGAAAGGUCAAUUCUCUAAUUGAGUUUGAAAUCAAUAGAAUUUUGCUAUUUAUUGCAAACUUUUCGUACAAUAAUUAUGAAAAGGGGGAAUUUUUCUUCCUUAGUUAAAUAAUUUUUACAAGAGGUAAAAAAUGAACAAAUUAUUUAAAAAUAUCCUCAACGUCGAAAAAAAAAUCCGGCUUGAGGGUAUUUUUCUAUAAAAACGUUUUCCUUAAUUAAAAUAUAAAUUUGCCUUCCUAUCGACUUUUUCUUAUUUUUUAUGUAUUAUAGUAAAAUAAAUUAGAGAUAUUAUUGGAGAAUGU
...((((.......(((((((...........................)))))))........(((((((((((((((((.((((.((((.......((((.....)))).)))).)))).))))))))))))).)))).))))..(((((((((((((((..((.((.....)).))(((((((((((((.....)))))))))....))))..........))))))...............((.(((((((.(((..(((.((((..((((((((....(((((((.(((.(((((.......))))).))).)))))))((((((.......))))))...))))))))..)))).))).)))...))))))).))..)))))))))..........((((..((((((((((((((.((((...........))))))))))))))))))..))))..(((((((((.......((((....)))).............((((...((((((((((((...))))).)))))))...))))........))))))))) (-149.93)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
ACAUUCUCCAAUAAUAUCUCUAAUUUAUUUUACUAUAAUACAUAAAAAAUAAGAAAAAGUCGAUAGGAAGGCAAAUUUAUAUUUUAAUUAAGGAAAACGUUUUUAUAGAAAAAUACCCUCAAGCCGGAUUUUUUUUUCGACGUUGAGGAUAUUUUUAAAUAAUUUGUUCAUUUUUUACCUCUUGUAAAAAUUAUUUAACUAAGGAAGAAAAAUUCCCCCUUUUCAUAAUUAUUGUACGAAAAGUUUGCAAUAAAUAGCAAAAUUCUAUUGAUUUCAAACUCAAUUAGAGAAUUGACCUUUCUUCUGUUUUAAUCUCGACUUAAAGAAUAAAAUAGAAACUUUUUAAUAAUGCCGGAUUCCAAAGGGCGGCAAGCCCUUUGGCAGCGCGAGUACAACCAGCGUAGCUUCGAGGUAAAAGAGAGGGGGUUAUAGGGGGAGAGAAAACCCUGCUCUGACUUGAAAAGCCCGUAAGGGAACGGGGUGUUCUCUCCCCCUAAACCAUUGUAUUGACAAAAAGAUAAGACGGCUAUAUAAUUAACAAAUUUUGUCGAGGGAGCCCCAUU
....((((........(((((((((((((((..............)))))).....((((((((((((.......((..(((..((((((.(((((..(((.((((..(((((((.(((((((.((((.......)))).).)))))).)))))))..)))).........(((((((.....)))))))......)))...((((......))))...))))).))))))..)))..))...(((((........))))).)))))))))))).......)))))))))....(((((..((((((((((.(((........))).))))))))))...........((((.((...(((((((((.....)))))))))..((....))....)).))))......)))))....)))).((((((.(((((((((((((.((((((.((......))....(((....)))..)))))).)))))))))))))..((.((((....))))...(((((((..(.((......)).)...)))))))..)).))))))... (-154.54)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1072	120	71	211	162	NC_002967:TDE0469|5end_hypothetical_protein_523987..524217_NEGATIVE
964	117	71	191	145	NC_002967:TDE0570|5end_hypothetical_protein_600169..600399_POSITIVE
921	189	141	231	182	NC_002967:TDE2259|5end_hypothetical_protein_2297237..2297467_NEGATIVE
713	160	111	189	145	NC_002967:TDE1058|5end_hypothetical_protein_1086366..1086596_NEGATIVE
630	350	301	179	130	NC_002967:TDE0402|5end_hypothetical_protein_454352..454582_NEGATIVE
609	167	124	200	166	NC_002967:TDE2735|5end_surface_antigen,_putative_2790154..2790384_POSITIVE
545	210	174	135	100	NC_002967:TDE2265|5end_hypothetical_protein_2302165..2302395_POSITIVE
525	220	174	130	85	NC_002967:TDE1892|5end_hypothetical_protein_1912065..1912295_POSITIVE
516	160	111	207	158	NC_002967:TDE0401|5end_adenylate/guanylate_cyclase_catalytic_domain_protein_454230..454460_NEGATIVE
512	359	314	56	8	NC_002967:TDE2099|5end_hypothetical_protein_2125027..2125257_POSITIVE
507	200	152	231	180	NC_002967:TDE2311|5end_hypothetical_protein_2348238..2348468_POSITIVE
450	350	301	214	166	NC_002967:TDE0670|5end_ATP-dependent_protease_La_707938..708168_POSITIVE
441	199	151	173	124	NC_002967:TDE2268|5end_hypothetical_protein_2304959..2305189_NEGATIVE
424	199	153	228	180	NC_002967:TDE0573|5end_hypothetical_protein_604681..604911_POSITIVE
409	148	108	209	167	NC_002967:TDE2024|5end_hypothetical_protein_2051021..2051251_NEGATIVE
407	191	152	51	8	NC_002967:TDE2310|5end_hypothetical_protein_2348042..2348272_POSITIVE
407	200	152	71	26	NC_002967:TDE1629|5end_dihydrolipoamide_dehydrogenase_1678514..1678744_NEGATIVE
404	205	163	221	176	NC_002967:TDE2583|5end_hypothetical_protein_2616322..2616552_POSITIVE
389	150	110	169	129	NC_002967:TDE0741|5end_hypothetical_protein_778158..778388_NEGATIVE
384	198	154	179	124	NC_002967:TDE1588|5end_tryptophanyl-tRNA_synthetase_1635813..1636043_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
966	210	163	61	14	NC_002967:TDE1981|3end_hypothetical_protein_1992437..1992587_POSITIVE
964	117	71	104	58	NC_002967:TDE0569|3end_hypothetical_protein_600162..600312_POSITIVE
713	160	111	57	13	NC_002967:TDE1059|3end_hypothetical_protein_1086498..1086648_NEGATIVE
530	199	152	59	10	NC_002967:TDE2312|3end_hypothetical_protein_2349049..2349199_POSITIVE
509	110	67	130	91	NC_002967:TDE1892|3end_hypothetical_protein_1912237..1912387_POSITIVE
453	197	152	151	109	NC_002967:TDE0977|3end_hypothetical_protein_1001640..1001790_POSITIVE
436	140	96	114	53	NC_002967:TDE1914|3end_Holliday_junction_DNA_helicase_RuvB_1930889..1931039_NEGATIVE
430	199	152	143	95	NC_002967:TDE2310|3end_hypothetical_protein_2348256..2348406_POSITIVE
429	90	47	139	98	NC_002967:TDE0402|3end_hypothetical_protein_454248..454398_NEGATIVE
421	200	152	85	34	NC_002967:TDE2135|3end_hypothetical_protein_2165418..2165568_POSITIVE
406	210	162	146	88	NC_002967:TDE2527|3end_hypothetical_protein_2555449..2555599_NEGATIVE
405	200	154	62	14	NC_002967:TDE0617|3end_hypothetical_protein_650093..650243_NEGATIVE
384	143	108	150	113	NC_002967:TDE2025|3end_hypothetical_protein_2051075..2051225_NEGATIVE
382	200	154	61	6	NC_002967:TDE1546|3end_hypothetical_protein_1591204..1591354_POSITIVE
355	210	175	42	1	NC_002967:TDE0240|3end_glycine_reductase_complex_protein_GrdC_272995..273145_NEGATIVE
353	210	165	147	102	NC_002967:TDE0956|3end_hypothetical_protein_980330..980480_POSITIVE
349	142	110	120	87	NC_002967:TDE1665|3end_hypothetical_protein_1718908..1719058_NEGATIVE
344	134	97	86	49	NC_002967:TDE2420|3end_DNA-directed_RNA_polymerase_beta'_subunit_2444960..2445110_NEGATIVE
344	335	297	151	112	NC_002967:TDE2099|3end_hypothetical_protein_2125229..2125379_POSITIVE
342	198	152	59	1	NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE