Origin IGS: tatccggcacctattatcctaatattctcattacgcaaggtaaaacgtaccgtcaatattttatcttcaactttaccaagacaaaaatatcttttctctttatccgaatgtctttcatcatataatataactctatttttatcaaaaaaaagcttcctgagcttcttcaaatgaaacattatgttttcttatatttatttcatttttattcttatcccattcaaatgtcatagtatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagacgcctaacaccgttttcaaagccggcaagttgctgctgcaactttcggtttaaaacaatgttagcttgacaagctaatcgcttgcggaaaagtatacggaagcgacctatgatgtttgcttctattgaaaaatattgttaggaagccaagtattataaagcagcagaataactatataaaatattattttctaaaatagaaatatatgtattgaaaatattgcaaaaagtatgtataatatactatgacatttgaatgggataagaataaaaatgaaataaatataagaaaacataatgtttcatttgaagaagctcaggaagcttttttttgataaaaatagagttatattatatgatgaaagacattcggataaagagaaaagatatttttgtcttggtaaagttgaagataaaatattgacggtacgttttaccttgcgtaatgagaatattaggataataggtgccggata Mask Tandem Repeat Region ================================================ tatccggcacctattatcctaatattctcattacgcaaggtaaaacgtaccgtcaatattttatcttcaactttaccaagacaaaaatatcttttctctttatccgaatgtctttcatcatataatataactctatttttatcaaaaaaaagcttcctgagcttcttcaaatgaaacattatgttttcttatatttatttcatttttattcttatcccattcaaatgtcatagtatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Find is-nt database================================================ Query_seq: TDE0264:TDE0266|TDE0264:TDE0266:ribbon-helix-helix protein, CopG family:hypothetical protein:<-<-:297378..297856 479 tatccggcacctattatcctaatattctcattacgcaaggtaaaacgtaccgtcaatattttatcttcaactttaccaagacaaaaatatcttttctctttatccgaatgtctttcatcatataatataactctatttttatcaaaaaaaagcttcctgagcttcttcaaatgaaacattatgttttcttatatttatttcatttttattcttatcccattcaaatgtcatagtatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE0264:TDE0266|TDE0264:TDE0266:ribbon-helix-helix protein, CopG family:hypothetical protein:<-<-:297378..297856 479 tatccggcacctattatcctaatattctcattacgcaaggtaaaacgtaccgtcaatattttatcttcaactttaccaagacaaaaatatcttttctctttatccgaatgtctttcatcatataatataactctatttttatcaaaaaaaagcttcctgagcttcttcaaatgaaacattatgttttcttatatttatttcatttttattcttatcccattcaaatgtcatagtatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE0264:TDE0266|TDE0264:TDE0266:ribbon-helix-helix protein, CopG family:hypothetical protein:<-<-:297378..297856 479 tatccggcacctattatcctaatattctcattacgcaaggtaaaacgtaccgtcaatattttatcttcaactttaccaagacaaaaatatcttttctctttatccgaatgtctttcatcatataatataactctatttttatcaaaaaaaagcttcctgagcttcttcaaatgaaacattatgttttcttatatttatttcatttttattcttatcccattcaaatgtcatagtatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 8 Min: 3 Max: 234 Len: 232 Subject: UniRef90_Q1RIR5 Cluster: Hypothetical protein; n=1; Rickettsia bellii RML369-C|Rep: Hypothetical protein - Rickettsia bellii (strain RML369-C) HSP 1 e-value: 1.0E-16 bit: 72.4 Len: 183 Query Start:3 Query End:185 Subject Strand: null Subject Start: 20 Subject End: 78 .. N I M F H L K K L R K L F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G ...................................................................................................................................................................................................................................................................................................... .. N V N F Y - - E A Q K A F L D I N R I I L E D I D H S I I E K R Y F C L G K I E D N I L T V R F M F R N H R I R I F G A G ...................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-16 bit: 35.8 Len: 57 Query Start:172 Query End:228 Subject Strand: null Subject Start: 4 Subject End: 22 ........................................................................................................................................................................... T F E W D K N K N E I N I R K H N V S ........................................................................................................................................................................................................................................................... ........................................................................................................................................................................... S F E W D E E K N K I N I Q K H N V N ........................................................................................................................................................................................................................................................... Subject: UniRef90_Q4UN39 Cluster: Hypothetical protein; n=1; Rickettsia felis|Rep: Hypothetical protein - Rickettsia felis (Rickettsia azadi) HSP 1 e-value: 3.0E-14 bit: 64.3 Len: 183 Query Start:3 Query End:185 Subject Strand: null Subject Start: 20 Subject End: 78 .. N I M F H L K K L R K L F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G ...................................................................................................................................................................................................................................................................................................... .. N V S F Y - - E A Q K A F L D I K R I I L E D I D H S I T E K R Y F C L G Q V D G N I L T V R F M F R G N H I R I F G A G ...................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 36.2 Len: 57 Query Start:172 Query End:228 Subject Strand: null Subject Start: 4 Subject End: 22 ........................................................................................................................................................................... T F E W D K N K N E I N I R K H N V S ........................................................................................................................................................................................................................................................... ........................................................................................................................................................................... S F E W D E E K N N I N I E K H N V S ........................................................................................................................................................................................................................................................... Subject: UniRef90_A1IFG5 Cluster: Hypothetical protein; n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep: Hypothetical protein - Candidatus Desulfococcus oleovorans Hxd3 HSP 1 e-value: 2.0E-11 bit: 62.4 Len: 147 Query Start:3 Query End:149 Subject Strand: null Subject Start: 32 Subject End: 80 .. F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... .. F L D P D R V I L E D L E H G V E E K R Y Y C L G K V S G G I M T V R F T Y R K S K I R I F G A G .......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 28.5 Len: 54 Query Start:172 Query End:225 Subject Strand: null Subject Start: 7 Subject End: 24 ........................................................................................................................................................................... F E W D K N K N E I N I R K H N V S .............................................................................................................................................................................................................................................................. ........................................................................................................................................................................... F D W D V N K D K L N Q E K H G V S .............................................................................................................................................................................................................................................................. Subject: UniRef90_Q1NNK3 Cluster: Hypothetical protein; n=1; delta proteobacterium MLMS-1|Rep: Hypothetical protein - delta proteobacterium MLMS-1 HSP 1 e-value: 4.0E-11 bit: 63.5 Len: 147 Query Start:3 Query End:149 Subject Strand: null Subject Start: 31 Subject End: 79 .. F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... .. F A D P H R V I A E D L N H S D Q E Q R Y Y C F G K V G G G I L T V R F T F R D Q V I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-11 bit: 26.2 Len: 51 Query Start:175 Query End:225 Subject Strand: null Subject Start: 6 Subject End: 22 .............................................................................................................................................................................. F E W D K N K N E I N I R K H N V .............................................................................................................................................................................................................................................................. .............................................................................................................................................................................. F E W D P S K D R E N Q R K H G V .............................................................................................................................................................................................................................................................. Subject: UniRef90_Q3ARL0 Cluster: Hypothetical protein; n=1; Chlorobium chlorochromatii CaD3|Rep: Hypothetical protein - Chlorobium chlorochromatii (strain CaD3) HSP 1 e-value: 5.0E-11 bit: 58.9 Len: 147 Query Start:3 Query End:149 Subject Strand: null Subject Start: 31 Subject End: 79 .. F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... .. F L D P K R I I A E D I K H S N E E N R F Y C V G R V N E E I M T V R F T Y R G N V I R I F G A G .......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-11 bit: 30.4 Len: 63 Query Start:172 Query End:234 Subject Strand: null Subject Start: 3 Subject End: 23 ........................................................................................................................................................................... T M T F E W D K N K N E I N I R K H N V S ..................................................................................................................................................................................................................................................... ........................................................................................................................................................................... S V R F E W D E E K N K A N Q K K H Q V S ..................................................................................................................................................................................................................................................... Subject: UniRef90_Q2ITK1 Cluster: Hypothetical protein; n=1; Rhodopseudomonas palustris HaA2|Rep: Hypothetical protein - Rhodopseudomonas palustris (strain HaA2) HSP 1 e-value: 7.0E-11 bit: 62.4 Len: 156 Query Start:3 Query End:158 Subject Strand: null Subject Start: 26 Subject End: 77 .. R K L F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K I L T V R F T L R N E N I R I I G A G ................................................................................................................................................................................................................................................................................................................................. .. Q R A F L D P H R V I A E D L D H S R D E R R Y F C F G K V E G G I V T V R F T M R S G R I R I F G A G ................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-11 bit: 26.6 Len: 51 Query Start:175 Query End:225 Subject Strand: null Subject Start: 4 Subject End: 20 .............................................................................................................................................................................. F E W D K N K N E I N I R K H N V .............................................................................................................................................................................................................................................................. .............................................................................................................................................................................. F E W D D A K N R L N Q T K H G V .............................................................................................................................................................................................................................................................. Subject: UniRef90_A3J7Z0 Cluster: Hypothetical protein; n=1; Marinobacter sp. ELB17|Rep: Hypothetical protein - Marinobacter sp. ELB17 HSP 1 e-value: 4.0E-9 bit: 56.6 Len: 147 Query Start:3 Query End:149 Subject Strand: null Subject Start: 31 Subject End: 81 .. F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D K - - I L T V R F T L R N E N I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... .. F K D D R R V I A E D V V H S Q D E K R Y F C F G L N Q E N S G I L T V R F T Y R N N Q I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-9 bit: 26.2 Len: 54 Query Start:172 Query End:225 Subject Strand: null Subject Start: 6 Subject End: 23 ........................................................................................................................................................................... F E W D K N K N E I N I R K H N V S .............................................................................................................................................................................................................................................................. ........................................................................................................................................................................... F E W D E A K N L E N Q E K H G V S .............................................................................................................................................................................................................................................................. Subject: UniRef90_Q3JEX5 Cluster: Hypothetical protein; n=1; Nitrosococcus oceani ATCC 19707|Rep: Hypothetical protein - Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) HSP 1 e-value: 6.0E-9 bit: 52.8 Len: 147 Query Start:3 Query End:149 Subject Strand: null Subject Start: 37 Subject End: 87 .. F F D K N R V I L Y D E R H S D K E K R Y F C L G K V E D - - K I L T V R F T L R N E N I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... .. F L D P K R V I A E D L S H S Q N E K R Y Y C F G T N R E G T G I I T V R F T Y R S G R I R I I G A G .......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-9 bit: 29.6 Len: 54 Query Start:172 Query End:225 Subject Strand: null Subject Start: 12 Subject End: 29 ........................................................................................................................................................................... F E W D K N K N E I N I R K H N V S .............................................................................................................................................................................................................................................................. ........................................................................................................................................................................... F E W D E A K N T A N Q R K H G V S .............................................................................................................................................................................................................................................................. tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 24 End: 122 ....................... M L I T Q G K T Y R Q Y F I F N F T K T K I S F L F I R M S F I I ..................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 53 Strand: + Start: 13 End: 171 ............ M I L I F S L R K V K R T V N I L S S T L P R Q K Y L F S L S E C L S S Y N I T L F L S K K S F L S F F K .................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 135 End: 230 ...................................................................................................................................... M F I K K K L P E L L Q M K H Y V F L Y L F H F Y S Y P I Q M S ......................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 178 End: 282 ................................................................................................................................................................................. M M F S Y I Y F I F I L I P F K C H S I L Y I L F A I F S I H I F L F ..................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 191 End: 289 .............................................................................................................................................................................................. M F I S F L F L S H S N V I V Y Y T Y F L Q Y F Q Y I Y F Y F R K .............................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 320 End: 412 ............................................................................................................................................................................................................................................................................................................................... M I L G F L T I F F N R S K H H R S L P Y T F P Q A I S L S S ................................................................... Protein_Len: 43 Strand: + Start: 351 End: 479 .............................................................................................................................................................................................................................................................................................................................................................. M E A N I I G R F R I L F R K R L A C Q A N I V L N R K L Q Q Q L A G F E N G V R R L Protein_Len: 30 Strand: - Start: 56 End: 145 ....................................................... Y K I K L K V L V F I D K R K I R I D K M M Y Y L E I K I M .............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 3 End: 182 .. G A G I I R I N E N R L T F R V T L I K D E V K G L C F Y R K E K D S H R E D Y L I V R N K D F F L K R L K K L H F M M ......................................................................................................................................................................................................................................................................................................... tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 88 Start: 237 End: 266 ............................................................................................................................................................................................................................................ATTGAAAATATTGCAAAAAGTATGTATAAT..................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 117 End: 146 ....................................................................................................................TTTGATAAAAATAGAGTTATATTATATGAT............................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 295 End: 324 ......................................................................................................................................................................................................................................................................................................TTTTATATAGTTATTCTGCTGCTTTATAAT........................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 44 HP_score: -3.1 Tail_Score: -3.04248 Start: 354 End: 377 Full_Region: gcggaaaagtatacg gaagcgacc tatgat gtttgcttc tattgaaaaatattg .................................................................................................................................................................................................................................................................................................................................................................gaagcgacctatgatgtttgcttc...................................................................................................... Find igs database================================================ Query_seq: TDE0264:TDE0266|TDE0264:TDE0266:ribbon-helix-helix protein, CopG family:hypothetical protein:<-<-:297378..297856 479 tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatattatacatactttttgcaatattttcaatacatatatttctattttagaaaataatattttatatagttattctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Intra-Species Hit: Count: 1 Min: 310 Max: 479 Len: 170 Subject: NC_002967_TDE0264_TDE0266|ribbon-helix-helix protein, CopG family:hypothetical protein|NEGATIVE:NEGATIVE|[297378,297856]|479 HSP 1 e-value: 2.0E-91 bit: 337.0 Len: 170 Query Start:310 Query End:479 Subject Strand: POSITIVE Subject Start: 310 Subject End: 479 .....................................................................................................................................................................................................................................................................................................................ctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt .....................................................................................................................................................................................................................................................................................................................ctgctgctttataatacttggcttcctaacaatatttttcaatagaagcaaacatcataggtcgcttccgtatacttttccgcaagcgattagcttgtcaagctaacattgttttaaaccgaaagttgcagcagcaacttgccggctttgaaaacggtgttaggcgtctt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGCUGCUUUAUAAUACUUGGCUUCCUAACAAUAUUUUUCAAUAGAAGCAAACAUCAUAGGUCGCUUCCGUAUACUUUUCCGCAAGCGAUUAGCUUGUCAAGCUAACAUUGUUUUAAACCGAAAGUUGCAGCAGCAACUUGCCGGCUUUGAAAACGGUGUUAGGCGUCUU ...................(((..(((((((....(((((((..(((((((.........(((((((.((.(......).)).)))))))(((((.....)))))...)))))))...(((.(((((((....)))))))..)))..)))))))...))))))).))).. (-45.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGACGCCUAACACCGUUUUCAAAGCCGGCAAGUUGCUGCUGCAACUUUCGGUUUAAAACAAUGUUAGCUUGACAAGCUAAUCGCUUGCGGAAAAGUAUACGGAAGCGACCUAUGAUGUUUGCUUCUAUUGAAAAAUAUUGUUAGGAAGCCAAGUAUUAUAAAGCAGCAG .....((.(((((..(((((..(((((((.(((((((....)))))))))))))))))))..))))))).......(((..((((((.((..........)).))))))..(((((((((((((((((((....))).......))))).)))))))))))....))).. (-49.81) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 454 165 123 184 134 NC_002967:TDE1816|5end_hypothetical_protein_1851673..1851903_NEGATIVE 378 170 125 184 142 NC_002967:TDE0268|5end_hypothetical_protein_300049..300279_NEGATIVE 357 166 125 185 125 NC_002967:TDE0279|5end_hypothetical_protein_309782..310012_NEGATIVE 346 167 127 46 2 NC_002967:TDE1463|5end_hypothetical_protein_1513072..1513302_NEGATIVE 327 166 124 48 5 NC_002967:TDE1541|5end_metallo-beta-lactamase_family_protein_1584898..1585128_POSITIVE 324 100 53 167 116 NC_002967:TDE1926|5end_hypothetical_protein_1942495..1942725_POSITIVE 317 166 126 200 160 NC_002967:TDE1769|5end_hypothetical_protein_1814377..1814607_NEGATIVE 317 168 130 37 2 NC_002967:TDE0852|5end_50S_ribosomal_protein_L13_875019..875249_POSITIVE 313 169 125 64 12 NC_002967:TDE2586|5end_DNA_polymerase_III_subunits_gamma_and_tau_2622089..2622319_NEGATIVE 313 168 124 64 20 NC_002967:TDE0135|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_154927..155157_POSITIVE 308 164 124 157 114 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 308 168 126 69 25 NC_002967:TDE0740|5end_hypothetical_protein_775987..776217_POSITIVE 305 158 120 46 8 NC_002967:TDE0317|5end_hypothetical_protein_350656..350886_POSITIVE 304 165 124 149 95 NC_002967:TDE2516|5end_hypothetical_protein_2542021..2542251_POSITIVE 302 98 54 194 137 NC_002967:TDE2635|5end_acetyltransferase,_GNAT_family_2675453..2675683_POSITIVE 302 160 119 185 149 NC_002967:TDE0023|5end_acetyltransferase,_GNAT_family_29419..29649_NEGATIVE 301 120 73 139 96 NC_002967:TDE1825|5end_hypothetical_protein_1858344..1858574_NEGATIVE 300 130 82 193 151 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 300 160 120 227 186 NC_002967:TDE0944|5end_hypothetical_protein_966247..966477_POSITIVE 299 88 44 227 185 NC_002967:TDE1595|5end_cobalamin_biosynthesis_protein_CbiD_1646039..1646269_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 454 165 123 91 41 NC_002967:TDE1817|3end_hypothetical_protein_1851766..1851916_NEGATIVE 436 120 80 40 1 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 357 166 125 72 12 NC_002967:TDE0280|3end_PIN_domain_protein_309895..310045_NEGATIVE 348 168 124 119 77 NC_002967:TDE2459|3end_hypothetical_protein_2485764..2485914_NEGATIVE 325 160 111 144 88 NC_002967:TDE2423|3end_ribosomal_protein_L10_2453417..2453567_NEGATIVE 316 167 127 42 2 NC_002967:TDE1464|3end_SsrA-binding_protein_1513076..1513226_NEGATIVE 313 168 124 67 23 NC_002967:TDE0134|3end_oxidoreductase,_FAD-dependent_155010..155160_POSITIVE 311 149 109 140 96 NC_002967:TDE0407|3end_glutamate_synthase_(NADPH),_homotetrameric_459011..459161_NEGATIVE 310 170 130 37 2 NC_002967:TDE0269|3end_hypothetical_protein_300196..300346_NEGATIVE 308 164 124 64 21 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 295 166 124 86 24 NC_002967:TDE1803|3end_hypothetical_protein_1838395..1838545_NEGATIVE 291 91 55 75 31 NC_002967:TDE0544|3end_hypothetical_protein_584866..585016_POSITIVE 290 164 127 69 19 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 290 164 125 64 13 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 290 166 127 86 38 NC_002967:TDE0263|3end_spermidine_N1-acetyltransferase,_putative_296400..296550_NEGATIVE 288 168 125 61 20 NC_002967:TDE2499|3end_hypothetical_protein_2523191..2523341_NEGATIVE 288 168 125 84 43 NC_002967:TDE0710|3end_hypothetical_protein_745667..745817_POSITIVE 287 149 110 146 104 NC_002967:TDE2057|3end_hypothetical_protein_2085158..2085308_NEGATIVE 287 170 124 100 30 NC_002967:TDE1783|3end_hypothetical_protein_1823438..1823588_NEGATIVE 285 164 122 73 16 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE