Origin IGS: ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatatttcaacatacctttatccgtgctcaaaagatagtcacatttcatcatttcagcacaaactatgtgacaagaatccttcatctttactcccgttgccatcactatttctgcctttgtaatgacttcttccgatttttcactacagacataatcagaaacattgtcgcttaaaaaattctttatggcagtttttctatccatatagggattacaagaattttcataatccaaaataaacgaagaagctagttccagatgtttttcttttataagcaactgaacaagcaactttgcctgtgtttcaagtgaaatcgacaaataattttggtcgtcatatggccgattgtaacaacagttatcaagataaactttcatggtcataattatatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gtgatattttaacatcaataagtacggttattactgtaattgcaatactgtatagtctatggtatcaagatattgagaaagctattgcggaggaactaccagaacacaaagatgatcaaattgaaccaaagaagagaataaaaactacattgataaataaagccattccattgttttttgtgagttttttattctttattatatatattccagaatcaattggaattgttaagcaaagtatagcttctgtccaatcatctagttggaactataattcaactatgctcgcaattatatttataaatatactaagtttactaatttcagttattttaatagtaaaatgtattaagctaattaaaaaactatgaaattgcatatagcacccgcttcaaactgacattgcagacaatctacaaatacaggttaagcaagtattatgcaaatactctctgtgtatgtagaataaaaacatgaaaatttctaagctaaaccctgctctgacttgaaaagcccgtaagggaacggggggctctcctcctaattatagagcctctatttctttaatgcttaaacctgtagcttttacaatattttgaatatgaagagtttgcaataaatagcaaaatttgaaaaaaggaatttcgatacgagatataataattttctatattatcagactttattctagaaaaatggcggacaccagataacgttcaatctaatatagtgcaagaattttcaaaatgtgatataattatgaccatgaaagtttatcttgataactgttgttacaatcggccatatgacgaccaaaattatttgtcgatttcacttgaaacacaggcaaagttgcttgttcagttgcttataaaagaaaaacatctggaactagcttcttcgtttattttggattatgaaaattcttgtaatccctatatggatagaaaaactgccataaagaattttttaagcgacaatgtttctgattatgtctgtagtgaaaaatcggaagaagtcattacaaaggcagaaatagtgatggcaacgggagtaaagatgaaggattcttgtcacatagtttgtgctgaaatgatgaaatgtgactatcttttgagcacggataaaggtatgttgaaatataaaattacttaatccgatagaattcatagatttattaaatggaggtaataaaa Mask Tandem Repeat Region ================================================ ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatatttcaacatacctttatccgtgctcaaaagatagtcacatttcatcatttcagcacaaactatgtgacaagaatccttcatctttactcccgttgccatcactatttctgcctttgtaatgacttcttccgatttttcactacagacataatcagaaacattgtcgcttaaaaaattctttatggcagtttttctatccatatagggattacaagaattttcataatccaaaataaacgaagaagctagttccagatgtttttcttttataagcaactgaacaagcaactttgcctgtgtttcaagtgaaatcgacaaataattttggtcgtcatatggccgattgtaacaacagttatcaagataaactttcatggtcataattatatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Find is-nt database================================================ Query_seq: TDE0158:TDE0160|TDE0158:TDE0160:hypothetical protein:hypothetical protein:<-<-:186039..187234 1196 ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatatttcaacatacctttatccgtgctcaaaagatagtcacatttcatcatttcagcacaaactatgtgacaagaatccttcatctttactcccgttgccatcactatttctgcctttgtaatgacttcttccgatttttcactacagacataatcagaaacattgtcgcttaaaaaattctttatggcagtttttctatccatatagggattacaagaattttcataatccaaaataaacgaagaagctagttccagatgtttttcttttataagcaactgaacaagcaactttgcctgtgtttcaagtgaaatcgacaaataattttggtcgtcatatggccgattgtaacaacagttatcaagataaactttcatggtcataattatatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TDE0158:TDE0160|TDE0158:TDE0160:hypothetical protein:hypothetical protein:<-<-:186039..187234 1196 ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatatttcaacatacctttatccgtgctcaaaagatagtcacatttcatcatttcagcacaaactatgtgacaagaatccttcatctttactcccgttgccatcactatttctgcctttgtaatgacttcttccgatttttcactacagacataatcagaaacattgtcgcttaaaaaattctttatggcagtttttctatccatatagggattacaagaattttcataatccaaaataaacgaagaagctagttccagatgtttttcttttataagcaactgaacaagcaactttgcctgtgtttcaagtgaaatcgacaaataattttggtcgtcatatggccgattgtaacaacagttatcaagataaactttcatggtcataattatatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TDE0158:TDE0160|TDE0158:TDE0160:hypothetical protein:hypothetical protein:<-<-:186039..187234 1196 ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatatttcaacatacctttatccgtgctcaaaagatagtcacatttcatcatttcagcacaaactatgtgacaagaatccttcatctttactcccgttgccatcactatttctgcctttgtaatgacttcttccgatttttcactacagacataatcagaaacattgtcgcttaaaaaattctttatggcagtttttctatccatatagggattacaagaattttcataatccaaaataaacgaagaagctagttccagatgtttttcttttataagcaactgaacaagcaactttgcctgtgtttcaagtgaaatcgacaaataattttggtcgtcatatggccgattgtaacaacagttatcaagataaactttcatggtcataattatatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 14 Min: 57 Max: 443 Len: 387 Subject: UniRef90_Q3VPA7 Cluster: Hypothetical protein; n=1; Pelodictyon phaeoclathratiforme BU-1|Rep: Hypothetical protein - Pelodictyon phaeoclathratiforme BU-1 HSP 1 e-value: 8.0E-25 bit: 117.0 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 122 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M R V Y L D N C C F N R P F D D Q S L L S V R L E T E A K L G I Q E Q I K S G R F S L G W S Y I L D F E N N A N P F P E K R I E I Q R W - - K D V A D L F V N E - T E E I L Q K M N E L T A I G L K S L D A L H V A C A C S L Q C Q Y F L T V D K G L L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q3VNL7 Cluster: Hypothetical protein; n=1; Pelodictyon phaeoclathratiforme BU-1|Rep: Hypothetical protein - Pelodictyon phaeoclathratiforme BU-1 HSP 1 e-value: 2.0E-23 bit: 113.0 Len: 384 Query Start:57 Query End:440 Subject Strand: null Subject Start: 13 Subject End: 138 ........................................................ I M T M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................ L L M M K I Y L D M C C F N R P Y D I Q T A A R I K L E T E A K L F I Q N A V L D S K L I L V W S F I L D Y E N S A N P Y P D H R E A I V E W - - K T L S K H Y I S A L D S I R E L G A T I A I K T G I K S K D A L H L A C A V E A K C D Y F I T T D R V F L K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A1WA79 Cluster: Hypothetical protein; n=1; Acidovorax sp. JS42|Rep: Hypothetical protein - Acidovorax sp. (strain JS42) HSP 1 e-value: 4.0E-15 bit: 85.5 Len: 369 Query Start:57 Query End:425 Subject Strand: null Subject Start: 4 Subject End: 123 ........................................................ V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K - - N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................ I Y L D M C C F N R P Y D D Q T Q T R I R L E T Q A K L E L Q D H V K A G S C H L L W S A A L D Y E C S R N P Y P D N Q L A I T Q W R W L A K K I - - - - - I E A G P E V V A L A K P M L E N G I K S Y D A L H V A S A I A G G A D F F V T T D D R L L K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q3AS80 Cluster: Hypothetical protein; n=1; Chlorobium chlorochromatii CaD3|Rep: Hypothetical protein - Chlorobium chlorochromatii (strain CaD3) HSP 1 e-value: 3.0E-14 bit: 82.4 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 5 Subject End: 126 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M K I Y L D V C C L N R P F D D Q T Q D K I H L E S E A V L T I I R H L E K K D W E W I S S S V V L Y E V Q K I P N R D R K Q R I L R - L C D K S S E V I L L N K - - E I Y R F A E I L N K K G I A S Y D A L H L A C A H F A N V D F F L S T D E R L I K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1PVT2 Cluster: Hypothetical protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep: Hypothetical protein - Candidatus Kuenenia stuttgartiensis HSP 1 e-value: 3.0E-13 bit: 79.0 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 2 Subject End: 123 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ I K V Y F D N C V Y N R P F D D Q G N E R V L I E A R A F Y I I L K W I E D G K I M S I N S D A L E Y E N S M T P D P D R R I R I K T Y L A M T K A H - - - A R F S E S L A E R A K E I V G L G M R G M D A V H I A M A E H E N A E Y F V T C D D G I I K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q0B0L4 Cluster: Hypothetical protein; n=1; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: Hypothetical protein - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) HSP 1 e-value: 7.0E-13 bit: 77.8 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 122 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E - - N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M K I Y M D V C C Y N R P F D D Q N Q D R I R L E A E A V M V I L F N C Q K G E W N L V S S D I V D I E L R K T Q N P I K K Q K A S L L A S I A D S - R V Y L - - - - N E G I E L K S N E Y Q R L G I D L F D S L H I A C A E E S R A D I M L S T D D V L I K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_P74671 Cluster: Sll1543 protein; n=1; Synechocystis sp. PCC 6803|Rep: Sll1543 protein - Synechocystis sp. (strain PCC 6803) HSP 1 e-value: 3.0E-12 bit: 75.9 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 122 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M K L Y L D T S V L N R V F D D Q T Q A R I A L K T Q A L R M I L Q L V E T E E V E F L N S A V L E F E A Q K N P Y P P R Q R W V Q Q C L A - L A K A Y V - - P M D E E I V A R G Q S L E Q M G V K S I D A L H M A S A E K G G C D Y F L A C D D R L L R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1F7N8 Cluster: Hypothetical protein; n=1; Roseiflexus sp. RS-1|Rep: Hypothetical protein - Roseiflexus sp. RS-1 HSP 1 e-value: 2.0E-11 bit: 73.2 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 122 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M R V Y L D N C C F Q R P L D N K S Q V R V R L E S E A V L A L L S L W E Q H Q I E V I S S E A L E F E L A Q N P D P V R R A Y V A E I V S G A A - - - I R V Q V D H A I S M R A K E L E A G G L R G M D A L H I A C A E A A G A D Y F C S C D D R L L R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q0AZM2 Cluster: Hypothetical protein; n=1; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: Hypothetical protein - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) HSP 1 e-value: 2.0E-11 bit: 72.8 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 123 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M K I Y F D M N I Y N R V F D D Q T Q M R I R F E S M A I D I L F E L V E K G D Y E L V W S F I L E Y E N N R N F F I E R K P Y I R Q - I S T L C K E T I K P D D E I K L I A K - E I V K G S N T K D K D A L H L A S A V Y S D C D Y F I T C D D K F I R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q2FL86 Cluster: Hypothetical protein; n=1; Methanospirillum hungatei JF-1|Rep: Hypothetical protein - Methanospirillum hungatei (strain JF-1 / DSM 864) HSP 1 e-value: 3.0E-10 bit: 69.3 Len: 360 Query Start:72 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 117 ....................................................................... M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................... M R E Y L D V C C Y C R P F D N K T H E R I S L E V D A V L A I L E L C K N G K H T L I G S V V I D E E I S Y I L E Y E R K T A V S N Y I - E L I Q E Y I P I D - - S D I I S Q A N V F E Q L G M H L F D A L H C A C A R I A H A T F L T T D D ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1X0K0 Cluster: Archaeal/vacuolar-type H+-ATPase subunit I; n=1; Pelotomaculum thermopropionicum SI|Rep: Archaeal/vacuolar-type H+-ATPase subunit I - Pelotomaculum thermopropionicum SI HSP 1 e-value: 2.0E-8 bit: 62.8 Len: 375 Query Start:57 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 122 ........................................................ M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S - - - E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M L I Y L D V C C L N R P F D D Q F Q E R I R L E S E A V L T I L N G G E K E K W R L L N S E A I E F E I S A I P E E E R K K K V A A L T A - - - - - - I A Q E K T K M D E K I K L R A R E L E K I G M K A Y D A L H L A C A E Y G G A E V F L T T D D K L L R ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_A0ZE15 Cluster: Hypothetical protein; n=1; Nodularia spumigena CCY9414|Rep: Hypothetical protein - Nodularia spumigena CCY9414 HSP 1 e-value: 2.0E-6 bit: 56.6 Len: 387 Query Start:57 Query End:443 Subject Strand: null Subject Start: 1 Subject End: 126 ........................................................ I I M T M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D K G M L K ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ........................................................ M I Q Q Y K L Y L D A C C L N R P F D D Q T Q S R I Y L E A Q A I I T I L N N C Q S A T W K L I N S S A L I A E L N Q T P D L E R L Q N V K K L L L I A K I R V I H S P F I E D - - - R A A E L Q K L G F S S Y D A T H I A S A E R S Q A D V F L T T D D R L F R ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q1FBQ6 Cluster: Hypothetical protein; n=1; Roseiflexus sp. RS-1|Rep: Hypothetical protein - Roseiflexus sp. RS-1 HSP 1 e-value: 2.0E-6 bit: 56.2 Len: 360 Query Start:72 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 117 ....................................................................... M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I V C A E M M K C D Y L L S T D ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ....................................................................... M R I Y L D T C T L H R P L D D R T Q L R I A L E A D A V L T L L T L C A Q G T L T L V V S A V N A F E T A R N P R P Q R A L F V Q A I M A - R A A E Y I - - P L T D E I E A R A Q E L E R A G V K A I D A L H W A T A E A A G V D R F C T C D ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: UniRef90_Q0B0D8 Cluster: Hypothetical protein; n=1; Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep: Hypothetical protein - Syntrophomonas wolfei subsp. wolfei (strain Goettingen) HSP 1 e-value: 2.0E-6 bit: 56.2 Len: 315 Query Start:117 Query End:431 Subject Strand: null Subject Start: 1 Subject End: 102 .................................................................................................................... M K V Y L D N C C Y N R P Y D D Q N Y L S I S L E T Q A K L L V Q L L I K E K H L E L A S S F I L D Y E N S C N P Y M D R K T A I K N F L S D N V S D Y V C S E K S E E V I T K A E I V M A T G V K M K D S C H I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................... M K I Y L D V C C L N R P F D D Q T Q N K I R I E S D A I L A I L S K C I S G E W K L I S S E V L D I E I K N T P D K W R R N K V Y Q L Y K P A K E K I M L N D K - - - I I N R A I E I Q S F G I K S F D S L H I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 56 End: 172 ....................................................... M S T Y L Y P C S K D S H I S S F Q H K L C D K N P S S L L P L P S L F L P L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 27 End: 224 .......................... M N S I G L S N F I F Q H T F I R A Q K I V T F H H F S T N Y V T R I L H L Y S R C H H Y F C L C N D F F R F F T T D I ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 188 End: 289 ........................................................................................................................................................................................... M F H Y R H N Q K H C R L K N S L W Q F F Y P Y R D Y K N F H N P K ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 347 End: 436 .......................................................................................................................................................................................................................................................................................................................................................... M P V F Q V K S T N N F G R H M A D C N N S Y Q D K L S W S ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 40 Strand: + Start: 511 End: 630 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K S D N I E N Y Y I S Y R N S F F Q I L L F I A N S S Y S K Y C K S Y R F K H ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 533 End: 649 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I I S R I E I P F F K F C Y L L Q T L H I Q N I V K A T G L S I K E I E A L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 818 End: 925 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q F H S F L I S L I H F T I K I T E I S K L S I F I N I I A S I V E L ............................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 956 End: 1078 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L C L T I P I D S G I Y I I K N K K L T K N N G M A L F I N V V F I L F F G S I ...................................................................................................................... Protein_Len: 33 Strand: - Start: 1059 End: 1157 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. E R R Q N L K I M K T N Q Y N R R L L K R L I K I G Y V I C Y Q M ....................................... Protein_Len: 60 Strand: - Start: 829 End: 1191 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ S V F F L P I A K N I L T T K I R K K P E I Q D D K H E P L E E A I A K E I D Q Y W L S Y L I A I V T I V T S I S T L M ..... Protein_Len: 34 Strand: - Start: 723 End: 824 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. T K I R C V C L T N A Y Y K S L R Y K Y I T Q L T L K F R T S Y A M .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 326 End: 421 ..................................................................................................................................................................................................................................................................................................................................... L C S F L C S Q R H K L H F R C I I K T T M H G I T V V T I L M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 45 End: 527 ............................................ A Q T E L S I S L Y N Q D D Y P R N Y C C N D L Y V K M T M I I D C K S F E Q V I N S Q V N D P T R W K E L I F D S L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 922 End: 951 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCAATCATCTAGTTGGAACTATAAT..................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 439 End: 468 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAAGAATTTTCAAAATGTGATATAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 605 End: 634 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGCTTAAACCTGTAGCTTTTACAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1129 End: 1158 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAATACTGTATAGTCTATGGTATCAA...................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -3.1 Tail_Score: -2.84878 Start: 369 End: 387 Full_Region: caatcggccatatga cgaccaa aatta tttgtcg atttcacttgaaaca ................................................................................................................................................................................................................................................................................................................................................................................cgaccaaaattatttgtcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 42 HP_score: -3.1 Tail_Score: -2.62933 Start: 369 End: 387 Full_Region: TGTTTCAAGTGAAAT CGACAAA TAATT TTGGTCG TCATATGGCCGATTG ................................................................................................................................................................................................................................................................................................................................................................................CGACAAATAATTTTGGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: TDE0158:TDE0160|TDE0158:TDE0160:hypothetical protein:hypothetical protein:<-<-:186039..187234 1196 ttttattacctccatttaataaatctatgaattctatcggattaagtaattttatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac Intra-Species Hit: Count: 1 Min: 1 Max: 1196 Len: 1196 Subject: NC_002967_TDE0158_TDE0160|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[186039,187234]|1196 HSP 1 e-value: 0.0 bit: 1493.0 Len: 753 Query Start:444 Query End:1196 Subject Strand: POSITIVE Subject Start: 444 Subject End: 1196 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................atcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................atcacattttgaaaattcttgcactatattagattgaacgttatctggtgtccgccatttttctagaataaagtctgataatatagaaaattattatatctcgtatcgaaattccttttttcaaattttgctatttattgcaaactcttcatattcaaaatattgtaaaagctacaggtttaagcattaaagaaatagaggctctataattaggaggagagccccccgttcccttacgggcttttcaagtcagagcagggtttagcttagaaattttcatgtttttattctacatacacagagagtatttgcataatacttgcttaacctgtatttgtagattgtctgcaatgtcagtttgaagcgggtgctatatgcaatttcatagttttttaattagcttaatacattttactattaaaataactgaaattagtaaacttagtatatttataaatataattgcgagcatagttgaattatagttccaactagatgattggacagaagctatactttgcttaacaattccaattgattctggaatatatataataaagaataaaaaactcacaaaaaacaatggaatggctttatttatcaatgtagtttttattctcttctttggttcaatttgatcatctttgtgttctggtagttcctccgcaatagctttctcaatatcttgataccatagactatacagtattgcaattacagtaataaccgtacttattgatgttaaaatatcac HSP 2 e-value: 6.0E-23 bit: 111.0 Len: 56 Query Start:1 Query End:56 Subject Strand: POSITIVE Subject Start: 1 Subject End: 56 ttttattacctccatttaataaatctatgaattctatcggattaagtaattttata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ttttattacctccatttaataaatctatgaattctatcggattaagtaattttata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUAUUACCUCCAUUUAAUAAAUCUAUGAAUUCUAUCGGAUUAAGUAAUUUUAUAUUUCAACAUACCUUUAUCCGUGCUCAAAAGAUAGUCACAUUUCAUCAUUUCAGCACAAACUAUGUGACAAGAAUCCUUCAUCUUUACUCCCGUUGCCAUCACUAUUUCUGCCUUUGUAAUGACUUCUUCCGAUUUUUCACUACAGACAUAAUCAGAAACAUUGUCGCUUAAAAAAUUCUUUAUGGCAGUUUUUCUAUCCAUAUAGGGAUUACAAGAAUUUUCAUAAUCCAAAAUAAACGAAGAAGCUAGUUCCAGAUGUUUUUCUUUUAUAAGCAACUGAACAAGCAACUUUGCCUGUGUUUCAAGUGAAAUCGACAAAUAAUUUUGGUCGUCAUAUGGCCGAUUGUAACAACAGUUAUCAAGAUAAACUUUCAUGGUCAUAAUUAUAUCACAUUUUGAAAAUUCUUGCACUAUAUUAGAUUGAACGUUAUCUGGUGUCCGCCAUUUUUCUAGAAUAAAGUCUGAUAAUAUAGAAAAUUAUUAUAUCUCGUAUCGAAAUUCCUUUUUUCAAAUUUUGCUAUUUAUUGCAAACUCUUCAUAUUCAAAAUAUUGUAAAAGCUACAGGUUUAAGCAUUAAAGAAAUAGAGGCUCUAUAAUUAGGAGGAGAGCCCCCCGUUCCCUUACGGGCUUUUCAAGUCAGAGCAGGGUUUAGCUUAGAAAUUUUCAUGUUUUUAUUCUACAUACACAGAGAGUAUUUGCAUAAUACUUGCUUAACCUGUAUUUGUAGAUUGUCUGCAAUGUCAGUUUGAAGCGGGUGCUAUAUGCAAUUUCAUAGUUUUUUAAUUAGCUUAAUACAUUUUACUAUUAAAAUAACUGAAAUUAGUAAACUUAGUAUAUUUAUAAAUAUAAUUGCGAGCAUAGUUGAAUUAUAGUUCCAACUAGAUGAUUGGACAGAAGCUAUACUUUGCUUAACAAUUCCAAUUGAUUCUGGAAUAUAUAUAAUAAAGAAUAAAAAACUCACAAAAAACAAUGGAAUGGCUUUAUUUAUCAAUGUAGUUUUUAUUCUCUUCUUUGGUUCAAUUUGAUCAUCUUUGUGUUCUGGUAGUUCCUCCGCAAUAGCUUUCUCAAUAUCUUGAUACCAUAGACUAUACAGUAUUGCAAUUACAGUAAUAACCGUACUUAUUGAUGUUAAAAUAUCAC ..(((((((.......((((((.((((((((....((((((..((((....(((((...................(((((.(((.(((.(........)))).))).))))).......(..((((((........)))).......))..)..................)))))..))))..))))))..)))....(((((......(((((.(((((((..((((......))))))))))).))))).......(((..(...((((((((((((.......(((((..(((((..(((.((((.((.(((((.........))))).)))))).)))..)))))....)))))...((((...(((((((....))).))))...((((((((...(((((....)))))...((.......)).))))))))......))))....))))))))))))....(((((((((........)))))))))........)..))).......))))).....)))))...))))))......(((..((((.......)))).....((((....(((((.....(((......((((.((((((..(((((((....................((((.....)))).....((((((((((((.((((......))))(((((.......))))).))))))....(((((((......)))))))..((((..(((((((((....(((((((.(((((((((...(((...((((((.....))))))...)))....)))))))))...)))))))..(((..((..((((((((((((.......(((((((................))))))).....((((((....)))))).....)))).))))))))..)).(..(((((((((.(((((((...((((........))))......)))))))...)))))..............((((((((((.((.(((......((((((.....))))))......))))))))))))))).....))))..)....)))...)))))))))....)))).))))))....)))))))..)))))).))))......))).....)))))..)))).))).)))))))..........((((((....)))))). (-247.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGAUAUUUUAACAUCAAUAAGUACGGUUAUUACUGUAAUUGCAAUACUGUAUAGUCUAUGGUAUCAAGAUAUUGAGAAAGCUAUUGCGGAGGAACUACCAGAACACAAAGAUGAUCAAAUUGAACCAAAGAAGAGAAUAAAAACUACAUUGAUAAAUAAAGCCAUUCCAUUGUUUUUUGUGAGUUUUUUAUUCUUUAUUAUAUAUAUUCCAGAAUCAAUUGGAAUUGUUAAGCAAAGUAUAGCUUCUGUCCAAUCAUCUAGUUGGAACUAUAAUUCAACUAUGCUCGCAAUUAUAUUUAUAAAUAUACUAAGUUUACUAAUUUCAGUUAUUUUAAUAGUAAAAUGUAUUAAGCUAAUUAAAAAACUAUGAAAUUGCAUAUAGCACCCGCUUCAAACUGACAUUGCAGACAAUCUACAAAUACAGGUUAAGCAAGUAUUAUGCAAAUACUCUCUGUGUAUGUAGAAUAAAAACAUGAAAAUUUCUAAGCUAAACCCUGCUCUGACUUGAAAAGCCCGUAAGGGAACGGGGGGCUCUCCUCCUAAUUAUAGAGCCUCUAUUUCUUUAAUGCUUAAACCUGUAGCUUUUACAAUAUUUUGAAUAUGAAGAGUUUGCAAUAAAUAGCAAAAUUUGAAAAAAGGAAUUUCGAUACGAGAUAUAAUAAUUUUCUAUAUUAUCAGACUUUAUUCUAGAAAAAUGGCGGACACCAGAUAACGUUCAAUCUAAUAUAGUGCAAGAAUUUUCAAAAUGUGAUAUAAUUAUGACCAUGAAAGUUUAUCUUGAUAACUGUUGUUACAAUCGGCCAUAUGACGACCAAAAUUAUUUGUCGAUUUCACUUGAAACACAGGCAAAGUUGCUUGUUCAGUUGCUUAUAAAAGAAAAACAUCUGGAACUAGCUUCUUCGUUUAUUUUGGAUUAUGAAAAUUCUUGUAAUCCCUAUAUGGAUAGAAAAACUGCCAUAAAGAAUUUUUUAAGCGACAAUGUUUCUGAUUAUGUCUGUAGUGAAAAAUCGGAAGAAGUCAUUACAAAGGCAGAAAUAGUGAUGGCAACGGGAGUAAAGAUGAAGGAUUCUUGUCACAUAGUUUGUGCUGAAAUGAUGAAAUGUGACUAUCUUUUGAGCACGGAUAAAGGUAUGUUGAAAUAUAAAAUUACUUAAUCCGAUAGAAUUCAUAGAUUUAUUAAAUGGAGGUAAUAAAA ...(((((((((((((.........(((((((.(((((((.((..(((((((.....)))))))((((....))))....)).))))))).((.....))..........)))))))..(((((((........((((((((.......((((........((.(((.(((.((((((((..(((((..(((..((((((((.........(((((.(((((((((((.(((((..((((((.......((((((......))))))..((((((((..........).)))))))........))))))..))))).)))))))))))))))).))))))))..)))..)))))...)))))))).))).))).))....(((....))))))).((((.(((((((((..(((.((..(((((((((((((..((((.((((.((((.....)))).)))).))))..............((..(((........)))..))...((((..(((....)))....(((((((((............))))))))).)))).....))))).)))))))).......(((....)))....)).))))))))))))..((((.(((((((....))....((((((...))))))......)))))))))....))))..)))))))).......(((......)))......)))))))........(((((((((((((((....((.(((....))).))..))))..((((((((.((..((((((((..(((((((...((((.........))))..)))))))(((((.((((((((((((....))))))....((((((((............(((..(((..(((......)))..)))..)))...((((((((((..........(((((.(((.....))))))))))))))))))))))))))..))))))......((((((((((((....((....))..)))))))..))))).....))))).))))))))..)).)))))))).)))))))).)))...(((((((((.(((.((((.........)))).))).)))))))))....).))))))))))))...(((((((.((..((((((.........))))))..))..))))))).... (-268.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 861 706 661 213 168 NC_002967:TDE0469|5end_hypothetical_protein_523987..524217_NEGATIVE 832 120 71 211 162 NC_002967:TDE0158|5end_hypothetical_protein_185948..186178_NEGATIVE 816 700 652 190 140 NC_002967:TDE0570|5end_hypothetical_protein_600169..600399_POSITIVE 791 699 653 155 105 NC_002967:TDE2259|5end_hypothetical_protein_2297237..2297467_NEGATIVE 660 810 763 227 180 NC_002967:TDE1813|5end_hypothetical_protein_1848249..1848479_NEGATIVE 660 810 763 183 136 NC_002967:TDE1791|5end_hypothetical_protein_1828775..1829005_NEGATIVE 646 810 763 227 180 NC_002967:TDE1790|5end_hypothetical_protein_1828007..1828237_NEGATIVE 642 810 763 176 129 NC_002967:TDE1836|5end_hypothetical_protein_1869443..1869673_NEGATIVE 642 810 763 213 166 NC_002967:TDE1831|5end_hypothetical_protein_1865032..1865262_NEGATIVE 642 810 763 178 131 NC_002967:TDE1817|5end_hypothetical_protein_1852599..1852829_NEGATIVE 642 810 763 175 128 NC_002967:TDE1811|5end_hypothetical_protein_1847483..1847713_NEGATIVE 642 810 763 213 166 NC_002967:TDE1797|5end_hypothetical_protein_1836272..1836502_NEGATIVE 642 810 763 184 137 NC_002967:TDE0267|5end_HAM1_protein_299108..299338_NEGATIVE 615 810 761 180 129 NC_002967:TDE1827|5end_hydrolase,_carbon-nitrogen_family_1860830..1861060_NEGATIVE 615 810 761 166 115 NC_002967:TDE1795|5end_funZ_protein,_putative_1834673..1834903_NEGATIVE 598 810 762 194 148 NC_002967:TDE1823|5end_hypothetical_protein_1856990..1857220_NEGATIVE 593 810 763 198 151 NC_002967:TDE1832|5end_hypothetical_protein_1865921..1866151_NEGATIVE 584 813 771 176 134 NC_002967:TDE1839|5end_hypothetical_protein_1871221..1871451_NEGATIVE 584 813 771 199 157 NC_002967:TDE1820|5end_hypothetical_protein_1854692..1854922_NEGATIVE 570 810 763 197 151 NC_002967:TDE1796|5end_hypothetical_protein_1835515..1835745_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 816 700 652 103 53 NC_002967:TDE0569|3end_hypothetical_protein_600162..600312_POSITIVE 642 810 763 87 40 NC_002967:TDE1843|3end_hypothetical_protein_1872199..1872349_NEGATIVE 642 810 763 77 30 NC_002967:TDE1837|3end_hypothetical_protein_1869542..1869692_NEGATIVE 642 810 763 73 26 NC_002967:TDE1832|3end_hypothetical_protein_1865172..1865322_NEGATIVE 642 810 763 78 31 NC_002967:TDE1812|3end_hypothetical_protein_1847580..1847730_NEGATIVE 642 810 763 69 22 NC_002967:TDE1787|3end_hypothetical_protein_1826378..1826528_NEGATIVE 642 810 763 87 40 NC_002967:TDE1780|3end_hypothetical_protein_1822183..1822333_NEGATIVE 642 810 763 73 26 NC_002967:TDE0268|3end_hypothetical_protein_299219..299369_NEGATIVE 623 810 763 82 35 NC_002967:TDE1806|3end_hypothetical_protein_1843190..1843340_NEGATIVE 618 810 763 87 40 NC_002967:TDE1793|3end_hydrolase,_carbon-nitrogen_family_1829957..1830107_NEGATIVE 616 810 762 47 1 NC_002967:TDE1814|3end_hypothetical_protein_1848429..1848579_NEGATIVE 616 810 762 47 1 NC_002967:TDE1792|3end_hypothetical_protein_1828911..1829061_NEGATIVE 615 810 761 76 25 NC_002967:TDE1828|3end_hypothetical_protein_1860934..1861084_NEGATIVE 615 810 761 73 22 NC_002967:TDE1796|3end_hypothetical_protein_1834766..1834916_NEGATIVE 609 809 763 77 31 NC_002967:TDE1789|3end_hypothetical_protein_1827338..1827488_NEGATIVE 593 810 763 77 30 NC_002967:TDE1836|3end_hypothetical_protein_1868514..1868664_NEGATIVE 593 810 763 73 26 NC_002967:TDE1810|3end_hypothetical_protein_1845924..1846074_NEGATIVE 593 810 763 78 31 NC_002967:TDE1808|3end_hypothetical_protein_1844084..1844234_NEGATIVE 591 810 763 104 57 NC_002967:TDE1815|3end_hypothetical_protein_1849458..1849608_NEGATIVE 590 810 761 76 25 NC_002967:TDE1776|3end_hypothetical_protein_1818414..1818564_NEGATIVE