Origin IGS: atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacacgagccgcaaatactcgaatcgccgaaccacagtttctgaaaacacgtgccaaaactttttccttttggcgcgagatttttttcattcccgaaccaaaacgaaaaaattctcgcgccacgtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 actgtcgctttggtatttgacatattataccaaatatatagaaagtattgtctcgttgtaaaccaacctgttatcgaatatcgatcctgtccgatgaagctgaggctcggatagctgctgtccgcacaccggcaatgatgattttgtgcataaagatttcttgccgcaggcctgcagcaaggagtctaccgcgggagattatcaaatgaataaaagtgactgtttgttgtgcaaaggtctcaaaaagggaaaatggctcgtaaaaaccggtgcttgtggtactgaaaaacgtggcgcgagaattttttcgttttggttcgggaatgaaaaaaatctcgcgccaaaaggaaaaagttttggcacgtgttttcagaaactgtggttcggcgattcgagtatttgcggctcgtgtttttcacgtttggggaatgcgcatcaggagccaaagggaattgaaaggaatggaactggctttagtttcgtatttttgcacggat Mask Tandem Repeat Region ================================================ atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacacgagccgcaaatactcgaatcgccgaaccacagtttctgaaaacacgtgccaaaactttttccttttggcgcgagatttttttcattcccgaaccaaaacgaaaaaattctcgcgccacgtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Find is-nt database================================================ Query_seq: PG2202:PG2204|PG2202:PG2204:Holliday junction resolvase-like protein:hypothetical protein:<-->:2310024..2310520 497 atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacacgagccgcaaatactcgaatcgccgaaccacagtttctgaaaacacgtgccaaaactttttccttttggcgcgagatttttttcattcccgaaccaaaacgaaaaaattctcgcgccacgtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2202:PG2204|PG2202:PG2204:Holliday junction resolvase-like protein:hypothetical protein:<-->:2310024..2310520 497 atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacacgagccgcaaatactcgaatcgccgaaccacagtttctgaaaacacgtgccaaaactttttccttttggcgcgagatttttttcattcccgaaccaaaacgaaaaaattctcgcgccacgtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2202:PG2204|PG2202:PG2204:Holliday junction resolvase-like protein:hypothetical protein:<-->:2310024..2310520 497 atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacacgagccgcaaatactcgaatcgccgaaccacagtttctgaaaacacgtgccaaaactttttccttttggcgcgagatttttttcattcccgaaccaaaacgaaaaaattctcgcgccacgtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 88 Max: 207 Len: 120 Subject: UniRef90_Q7MTY0 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 120 Query Start:88 Query End:207 Subject Strand: null Subject Start: 1 Subject End: 40 ....................................................................................... V A R E F F R F G S G M K K I S R Q K E K V L A R V F R N C G S A I R V F A A R .................................................................................................................................................................................................................................................................................................. ....................................................................................... M A R D F F A F G S G S K K F S R Q S E K I L A P F F R D L G T A I G V F L A R .................................................................................................................................................................................................................................................................................................. atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 52 End: 255 ................................................... M A P D A H S P N V K N T S R K Y S N R R T T V S E N T C Q N F F L L A R D F F H S R T K T K K F S R H V F Q Y H K H R .................................................................................................................................................................................................................................................. Protein_Len: 53 Strand: + Start: 135 End: 293 ...................................................................................................................................... M P K L F P F G A R F F S F P N Q N E K I L A P R F S V P Q A P V F T S H F P F L R P L H N K Q S L L F I ............................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 107 End: 424 .......................................................................................................... M A E P Q F L K T R A K T F S F W R E I F F I P E P K R K N S R A T F F S T T S T G F Y E P F S L F E T F A Q Q T V T F ......................................................................... Protein_Len: 51 Strand: + Start: 318 End: 470 ............................................................................................................................................................................................................................................................................................................................. M L Q A C G K K S L C T K S S L P V C G Q Q L S E P Q L H R T G S I F D N R L V Y N E T I L S I Y L V ........................... Protein_Len: 31 Strand: + Start: 403 End: 495 .................................................................................................................................................................................................................................................................................................................................................................................................................. M G Q D R Y S I T G W F T T R Q Y F L Y I W Y N M S N T K A T .. Protein_Len: 34 Strand: - Start: 387 End: 488 .................................................................................................................................................................................................................................................................................................................................................................................................. G L R L K M P C S R Y E I V P Q N V V L C Y K R Y I Q Y L I D F V M ......... Protein_Len: 53 Strand: - Start: 292 End: 450 ................................................................................................................................................................................................................................................................................................... K I I E R P L S R A A P R R C S I K I C L I M M A P T R V A A I R A E A E D S L I S I R Y C T P K C R S M ............................................... Protein_Len: 30 Strand: - Start: 45 End: 134 ............................................ N G K A G S A C E G F T F F V L R L Y E F R R V V T E S F M ........................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 352 . N G F W F S F I R A G R K E T G C A G T K V L W K G K K L G K C L L C D S K N M Q Y D G A T S E K S C A Q P L F D K H M ................................................................................................................................................. Protein_Len: 60 Strand: - Start: 1 End: 228 R Q S R I R M G W V H F V R A A F V R I A S G C N R F V R A L V K E K Q R S I K K M G S G F R F F E R A V N K L V V L M ............................................................................................................................................................................................................................................................................. atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 95 HP_score: -3.1 Tail_Score: -5.63103 Start: 131 End: 164 Full_Region: CCACAGTTTCTGAAA ACACGTGCCAAAA CTTTTTCC TTTTGGCGCGAGA TTTTTTTCATTCCCG ..................................................................................................................................ACACGTGCCAAAACTTTTTCCTTTTGGCGCGAGA............................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 61 HP_score: -4.4 Tail_Score: -4.09243 Start: 132 End: 163 Full_Region: gggaatgaaaaaaat ctcgcgccaaaa ggaaaaag ttttggcacgtg ttttcagaaactgtg ...................................................................................................................................ctcgcgccaaaaggaaaaagttttggcacgtg.............................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 68 HP_score: -6.6 Tail_Score: -3.96777 Start: 132 End: 163 Full_Region: CACAGTTTCTGAAAA CACGTGCCAAAA CTTTTTCC TTTTGGCGCGAG ATTTTTTTCATTCCC ...................................................................................................................................CACGTGCCAAAACTTTTTCCTTTTGGCGCGAG.............................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 59 HP_score: -5.6 Tail_Score: -3.6422 Start: 134 End: 161 Full_Region: gaatgaaaaaaatct cgcgccaaaa ggaaaaag ttttggcacg tgttttcagaaactg .....................................................................................................................................cgcgccaaaaggaaaaagttttggcacg................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 63 HP_score: -5.3 Tail_Score: -4.11773 Start: 144 End: 195 Full_Region: aacgtggcgcgagaa ttttttcgttttggttcgggaat gaaaaa aatctcgcgccaaaaggaaaaag ttttggcacgtgttt ...............................................................................................................................................ttttttcgttttggttcgggaatgaaaaaaatctcgcgccaaaaggaaaaag.............................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 39 HP_score: -2.2 Tail_Score: -2.57211 Start: 145 End: 194 Full_Region: AACACGTGCCAAAAC TTTTTCCTTTTGGCGCGAGATT TTTTTC ATTCCCGAACCAAAACGAAAAA ATTCTCGCGCCACGT ................................................................................................................................................TTTTTCCTTTTGGCGCGAGATTTTTTTCATTCCCGAACCAAAACGAAAAA............................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 58 HP_score: -6.6 Tail_Score: -3.06341 Start: 145 End: 194 Full_Region: acgtggcgcgagaat tttttcgttttggttcgggaat gaaaaa aatctcgcgccaaaaggaaaaa gttttggcacgtgtt ................................................................................................................................................tttttcgttttggttcgggaatgaaaaaaatctcgcgccaaaaggaaaaa............................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 89 HP_score: -8.5 Tail_Score: -4.65895 Start: 153 End: 208 Full_Region: CCAAAACTTTTTCCT TTTGGCGCGAGATTTTTTTCATT CCCGAACCAA AACGAAAAAATTCTCGCGCCACG TTTTTCAGTACCACA ........................................................................................................................................................TTTGGCGCGAGATTTTTTTCATTCCCGAACCAAAACGAAAAAATTCTCGCGCCACG................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 74 HP_score: -9.8 Tail_Score: -3.39216 Start: 154 End: 207 Full_Region: CAAAACTTTTTCCTT TTGGCGCGAGATTTTTTTCATT CCCGAACCAA AACGAAAAAATTCTCGCGCCAC GTTTTTCAGTACCAC .........................................................................................................................................................TTGGCGCGAGATTTTTTTCATTCCCGAACCAAAACGAAAAAATTCTCGCGCCAC.................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 84 HP_score: -13.3 Tail_Score: -2.63208 Start: 155 End: 206 Full_Region: AAAACTTTTTCCTTT TGGCGCGAGATTTTTTTCATT CCCGAACCAA AACGAAAAAATTCTCGCGCCA CGTTTTTCAGTACCA ..........................................................................................................................................................TGGCGCGAGATTTTTTTCATTCCCGAACCAAAACGAAAAAATTCTCGCGCCA................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 71 HP_score: -8.0 Tail_Score: -3.86015 Start: 312 End: 343 Full_Region: TAATCTCCCGCGGTA GACTCCTTGCTGCA GGCC TGCGGCAAGAAATC TTTATGCACAAAATC .......................................................................................................................................................................................................................................................................................................................GACTCCTTGCTGCAGGCCTGCGGCAAGAAATC.......................................................................................................................................................... Find igs database================================================ Query_seq: PG2202:PG2204|PG2202:PG2204:Holliday junction resolvase-like protein:hypothetical protein:<-->:2310024..2310520 497 atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt Intra-Species Hit: Count: 1 Min: 1 Max: 497 Len: 497 Subject: NC_002950_PG2202_PG2204|Holliday junction resolvase-like protein:hypothetical protein|NEGATIVE:POSITIVE|[2310024,2310520]|497 HSP 1 e-value: 1.0E-162 bit: 573.0 Len: 289 Query Start:209 Query End:497 Subject Strand: POSITIVE Subject Start: 209 Subject End: 497 ................................................................................................................................................................................................................tttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt ................................................................................................................................................................................................................tttttcagtaccacaagcaccggtttttacgagccattttccctttttgagacctttgcacaacaaacagtcacttttattcatttgataatctcccgcggtagactccttgctgcaggcctgcggcaagaaatctttatgcacaaaatcatcattgccggtgtgcggacagcagctatccgagcctcagcttcatcggacaggatcgatattcgataacaggttggtttacaacgagacaatactttctatatatttggtataatatgtcaaataccaaagcgacagt HSP 2 e-value: 7.0E-42 bit: 172.0 Len: 87 Query Start:1 Query End:87 Subject Strand: POSITIVE Subject Start: 1 Subject End: 87 atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaac.......................................................................................................................................................................................................................................................................................................................................................................................................................... atccgtgcaaaaatacgaaactaaagccagttccattcctttcaattccctttggctcctgatgcgcattccccaaacgtgaaaaac.......................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUCCGUGCAAAAAUACGAAACUAAAGCCAGUUCCAUUCCUUUCAAUUCCCUUUGGCUCCUGAUGCGCAUUCCCCAAACGUGAAAAACACGAGCCGCAAAUACUCGAAUCGCCGAACCACAGUUUCUGAAAACACGUGCCAAAACUUUUUCCUUUUGGCGCGAGAUUUUUUUCAUUCCCGAACCAAAACGAAAAAAUUCUCGCGCCACGUUUUUCAGUACCACAAGCACCGGUUUUUACGAGCCAUUUUCCCUUUUUGAGACCUUUGCACAACAAACAGUCACUUUUAUUCAUUUGAUAAUCUCCCGCGGUAGACUCCUUGCUGCAGGCCUGCGGCAAGAAAUCUUUAUGCACAAAAUCAUCAUUGCCGGUGUGCGGACAGCAGCUAUCCGAGCCUCAGCUUCAUCGGACAGGAUCGAUAUUCGAUAACAGGUUGGUUUACAACGAGACAAUACUUUCUAUAUAUUUGGUAUAAUAUGUCAAAUACCAAAGCGACAGU ....(((((((.....(.((((......)))).).....((((((.......((((((.(((.(((.((((......((((.....))))....(......)..))))))).(((((...(((((((((((.(((((.(((((........)))))((((((((.(((((((................))))))).))))))))))))))))))))......))))...)))))))).))))))..........))))))..)))))))........(((.((((.....((((((((...((.((..((((((..(((((((((....))))))))).........((((((....((....))....))))))..((((..((.(((((((....))....))))).)).((((.....)))).....))))))))))..)).))..(((((............)))))....))))))))...)))).)))... (-120.62) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUGUCGCUUUGGUAUUUGACAUAUUAUACCAAAUAUAUAGAAAGUAUUGUCUCGUUGUAAACCAACCUGUUAUCGAAUAUCGAUCCUGUCCGAUGAAGCUGAGGCUCGGAUAGCUGCUGUCCGCACACCGGCAAUGAUGAUUUUGUGCAUAAAGAUUUCUUGCCGCAGGCCUGCAGCAAGGAGUCUACCGCGGGAGAUUAUCAAAUGAAUAAAAGUGACUGUUUGUUGUGCAAAGGUCUCAAAAAGGGAAAAUGGCUCGUAAAAACCGGUGCUUGUGGUACUGAAAAACGUGGCGCGAGAAUUUUUUCGUUUUGGUUCGGGAAUGAAAAAAAUCUCGCGCCAAAAGGAAAAAGUUUUGGCACGUGUUUUCAGAAACUGUGGUUCGGCGAUUCGAGUAUUUGCGGCUCGUGUUUUUCACGUUUGGGGAAUGCGCAUCAGGAGCCAAAGGGAAUUGAAAGGAAUGGAACUGGCUUUAGUUUCGUAUUUUUGCACGGAU .((((...((((((((..........))))))))...))))........(((.(((.(((((....(((...((((.....))))(((.(((((((.(((((..((((((((.((((....((((((((.((((.((((((((((.(((....(((((((((((.(((....))).)))))))))))...))).))))))))))...............(.((((..((.((.....((((.....)))).....)).))...)))).).)))).)))...((((((((((((.((...((((((((((.(((((((.(((((.(......).))))).))))))).)))))))))))).))))).)))))))....)))))..)))).)))))))).....)))))(((((((..((....))..))))))))))).))).....)))........))).(((((((((....)))))))))...))))))))))) (-161.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 997 120 71 211 162 NC_002950:PG2202|5end_Holliday_junction_resolvase-like_protein_2309933..2310163_NEGATIVE 710 216 171 122 76 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 691 210 162 80 33 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 583 216 174 99 58 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 571 216 174 121 80 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 545 197 151 196 151 NC_002950:PG0081|5end_hypothetical_protein_93805..94035_POSITIVE 537 359 315 47 4 NC_002950:PG0297|5end_hypothetical_protein_335518..335748_NEGATIVE 452 210 166 82 38 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 446 216 173 181 137 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 439 410 361 80 28 NC_002950:PG0246|5end_hypothetical_protein_281241..281471_NEGATIVE 435 294 251 193 151 NC_002950:PG0267|5end_arginyl-tRNA_synthetase_299100..299330_POSITIVE 434 230 182 132 86 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 434 407 361 94 38 NC_002950:PG0897|5end_alpha-amylase_family_protein_962472..962702_NEGATIVE 430 399 352 73 16 NC_002950:PG1735|5end_MutT/nudix_family_protein_1823082..1823312_NEGATIVE 428 346 301 198 141 NC_002950:PG0307|5end_NADH-ubiquinone_oxidoreductase_342560..342790_POSITIVE 428 406 362 181 135 NC_002950:PG0201|5end_ribonuclease_P_238770..239000_NEGATIVE 428 216 174 143 102 NC_002950:PG0007|5end_hypothetical_protein_6913..7143_NEGATIVE 427 230 182 51 1 NC_002950:PG0524|5end_hypothetical_protein_568599..568829_POSITIVE 422 169 122 231 183 NC_002950:PG0470|5end_hypothetical_protein_511883..512113_NEGATIVE 409 335 293 159 105 NC_002950:PG0203|5end_hypothetical_protein_240211..240441_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 528 200 152 49 1 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 454 230 182 118 61 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 446 216 173 60 17 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 427 408 363 141 95 NC_002950:PG0090|3end_Dps_family_protein_106083..106233_POSITIVE 409 407 362 140 97 NC_002950:PG1675|3end_hypothetical_protein_1760360..1760510_POSITIVE 409 335 293 108 54 NC_002950:PG0204|3end_hypothetical_protein_240262..240412_NEGATIVE 407 410 366 151 104 NC_002950:PG1608|3end_methylmalonyl-CoA_decarboxylase,_beta_subunit_1688685..1688835_NEGATIVE 399 345 301 57 2 NC_002950:PG0311|3end_glycosyl_transferase,_group_2_family_protein_345559..345709_NEGATIVE 393 335 300 78 38 NC_002950:PG1028|3end_TPR_domain_protein_1091096..1091246_POSITIVE 388 410 363 88 45 NC_002950:PG2063|3end_hypothetical_protein_2160390..2160540_NEGATIVE 381 350 306 57 8 NC_002950:PG0605|3end_hypothetical_protein_661165..661315_NEGATIVE 380 407 367 117 75 NC_002950:PG0333|3end_hypothetical_protein_368811..368961_POSITIVE 378 391 360 151 111 NC_002950:PG2197|3end_hypothetical_protein_2303482..2303632_POSITIVE 378 77 31 61 15 NC_002950:PG1253|3end_DNA_ligase,_NAD-dependent_1329597..1329747_NEGATIVE 378 403 364 143 106 NC_002950:PG0303|3end_ferredoxin_339603..339753_POSITIVE 377 409 366 64 5 NC_002950:PG1782|3end_hypothetical_protein_1871961..1872111_POSITIVE 374 408 365 146 100 NC_002950:PG1789|3end_peptidyl-dipeptidase_Dcp_1877417..1877567_NEGATIVE 372 350 301 83 27 NC_002950:PG1007|3end_transcriptional_regulator,_GntR_family_1066518..1066668_NEGATIVE 371 337 299 64 15 NC_002950:PG2221|3end_MiaB-like_tRNA_modifying_enzyme_2336840..2336990_POSITIVE 362 407 365 57 14 NC_002950:PG1078|3end_electron_transfer_flavoprotein,_alpha_subunit_1146525..1146675_POSITIVE