Origin IGS: catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactatgaaacagaactacttcaaaagagtctgctcactgctttggctggttttacccatgcttattatgccattggaagtagcagctcaagagattattccgaacgaagaggtgttggaatcattgactttcgttgcaccggttgaggagacagacgcaatagaggcagaggtagaagctctgcaggagatagtcgctactgaggagattgcggagcaggctgttcgttcttatacctacacggtctatcgtgatggcgtgaagattgcttcaggattgactgagcccacttttctcgatgaagatgttcctgccggcgaacatacctactgcgtagaagtacagtatcagggaggcgtatccgacaaagtatgcgtggacgtagaggtgaaggacttcaaaccggttaccaatctcaccggaactgcttccaatgacgaagtttctttggactgggacggtgtggaagagaaagctgaagagccggcaagtgataaagcagtcagctacaacgtctacaagaatggaaccttgatcggtaatacagctgaaactcattatgtggagaccggtgtagccaatggtacatacatctacgaagtggaagtaaagtatcctgacggtgtatctccgaaggtggctgtaaccgtgaccgtgaccaacagctcattgagcaatgtagatggacaggctccttacacattgcgagtagaaggcaagaagattattgcggaagcccatggtatgatcacgctctacgacatcaacggacgtaccgtggccgtagccccgaatcgattggaatacatggcgcaaaccggtttctatgcagtgcgcttcgatgtggggaataaacaccatgtatcgaaaatacaagtaagataaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gctcaacctcccccctctcttctctcctcctttaccaagagaccatctcaccaccaatctattagaagctgagacaacctttcgccatccgtccgaaagcctttgtttttcaccccacctccaatcctgcagattccgaccggaaatacaatacgggcatgagtagcaaaaaagaagaggctgcatcgaaaaataatctcgacgcagcctctttgtctttagtcaggggaaagtatctgctttatcttacttgtattttcgatacatggtgtttattccccacatcgaagcgcactgcatagaaaccggtttgcgccatgtattccaatcgattcggggctacggccacggtacgtccgttgatgtcgtagagcgtgatcataccatgggcttccgcaataatcttcttgccttctactcgcaatgtgtaaggagcctgtccatctacattgctcaatgagctgttggtcacggtcacggttacagccaccttcggagatacaccgtcaggatactttacttccacttcgtagatgtatgtaccattggctacaccggtctccacataatgagtttcagctgtattaccgatcaaggttccattcttgtagacgttgtagctgactgctttatcacttgccggctcttcagctttctcttccacaccgtcccagtccaaagaaacttcgtcattggaagcagttccggtgagattggtaaccggtttgaagtccttcacctctacgtccacgcatactttgtcggatacgcctccctgatactgtacttctacgcagtaggtatgttcgccggcaggaacatcttcatcgagaaaagtgggctcagtcaatcctgaagcaatcttcacgccatcacgatagaccgtgtaggtataagaacgaacagcctgctccgcaatctcctcagtagcgactatctcctgcagagcttctacctctgcctctattgcgtctgtctcctcaaccggtgcaacgaaagtcaatgattccaacacctcttcgttcggaataatctcttgagctgctacttccaatggcataataagcatgggtaaaaccagccaaagcagtgagcagactcttttgaagtagttctgtttcatagttatctccttttttaattagtatctcatcttgttgcttctgttcgcctcttaaataaggtgatacacaaagataaaaatatatttcgccggcaagctattcttcaacctaaaaagtttgtatgacgcaggaatcggaatcctttttcttcgacaaaattgaagtcaatcaggagcaaggaggttctcttttaggtcaaaagactgatg Mask Tandem Repeat Region ================================================ catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactatgaaacagaactacttcaaaagagtctgctcactgctttggctggttttacccatgcttattatgccattggaagtagcagctcaagagattattccgaacgaagaggtgttggaatcattgactttcgttgcaccggttgaggagacagacgcaatagaggcagaggtagaagctctgcaggagatagtcgctactgaggagattgcggagcaggctgttcgttcttatacctacacggtctatcgtgatggcgtgaagattgcttcaggattgactgagcccacttttctcgatgaagatgttcctgccggcgaacatacctactgcgtagaagtacagtatcagggaggcgtatccgacaaagtatgcgtggacgtagaggtgaaggacttcaaaccggttaccaatctcaccggaactgcttccaatgacgaagtttctttggactgggacggtgtggaagagaaagctgaagagccggcaagtgataaagcagtcagctacaacgtctacaagaatggaaccttgatcggtaatacagctgaaactcattatgtggagaccggtgtagccaatggtacatacatctacgaagtggaagtaaagtatcctgacggtgtatctccgaaggtggctgtaaccgtgaccgtgaccaacagctcattgagcaatgtagatggacaggctccttacacattgcgagtagaaggcaagaagattattgcggaagcccatggtatgatcacgctctacgacatcaacggacgtaccgtggccgtagccccgaatcgattggaatacatggcgcaaaccggtttctatgcagtgcgcttcgatgtggggaataaacaccatgtatcgaaaatacaagtaagataaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Find is-nt database================================================ Query_seq: PG2197:PG2199|PG2197:PG2199:hypothetical protein:ABC transporter, ATP-binding protein, putative:-><-:2303543..2304875 1333 catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactatgaaacagaactacttcaaaagagtctgctcactgctttggctggttttacccatgcttattatgccattggaagtagcagctcaagagattattccgaacgaagaggtgttggaatcattgactttcgttgcaccggttgaggagacagacgcaatagaggcagaggtagaagctctgcaggagatagtcgctactgaggagattgcggagcaggctgttcgttcttatacctacacggtctatcgtgatggcgtgaagattgcttcaggattgactgagcccacttttctcgatgaagatgttcctgccggcgaacatacctactgcgtagaagtacagtatcagggaggcgtatccgacaaagtatgcgtggacgtagaggtgaaggacttcaaaccggttaccaatctcaccggaactgcttccaatgacgaagtttctttggactgggacggtgtggaagagaaagctgaagagccggcaagtgataaagcagtcagctacaacgtctacaagaatggaaccttgatcggtaatacagctgaaactcattatgtggagaccggtgtagccaatggtacatacatctacgaagtggaagtaaagtatcctgacggtgtatctccgaaggtggctgtaaccgtgaccgtgaccaacagctcattgagcaatgtagatggacaggctccttacacattgcgagtagaaggcaagaagattattgcggaagcccatggtatgatcacgctctacgacatcaacggacgtaccgtggccgtagccccgaatcgattggaatacatggcgcaaaccggtttctatgcagtgcgcttcgatgtggggaataaacaccatgtatcgaaaatacaagtaagataaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2197:PG2199|PG2197:PG2199:hypothetical protein:ABC transporter, ATP-binding protein, putative:-><-:2303543..2304875 1333 catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactatgaaacagaactacttcaaaagagtctgctcactgctttggctggttttacccatgcttattatgccattggaagtagcagctcaagagattattccgaacgaagaggtgttggaatcattgactttcgttgcaccggttgaggagacagacgcaatagaggcagaggtagaagctctgcaggagatagtcgctactgaggagattgcggagcaggctgttcgttcttatacctacacggtctatcgtgatggcgtgaagattgcttcaggattgactgagcccacttttctcgatgaagatgttcctgccggcgaacatacctactgcgtagaagtacagtatcagggaggcgtatccgacaaagtatgcgtggacgtagaggtgaaggacttcaaaccggttaccaatctcaccggaactgcttccaatgacgaagtttctttggactgggacggtgtggaagagaaagctgaagagccggcaagtgataaagcagtcagctacaacgtctacaagaatggaaccttgatcggtaatacagctgaaactcattatgtggagaccggtgtagccaatggtacatacatctacgaagtggaagtaaagtatcctgacggtgtatctccgaaggtggctgtaaccgtgaccgtgaccaacagctcattgagcaatgtagatggacaggctccttacacattgcgagtagaaggcaagaagattattgcggaagcccatggtatgatcacgctctacgacatcaacggacgtaccgtggccgtagccccgaatcgattggaatacatggcgcaaaccggtttctatgcagtgcgcttcgatgtggggaataaacaccatgtatcgaaaatacaagtaagataaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2197:PG2199|PG2197:PG2199:hypothetical protein:ABC transporter, ATP-binding protein, putative:-><-:2303543..2304875 1333 catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactatgaaacagaactacttcaaaagagtctgctcactgctttggctggttttacccatgcttattatgccattggaagtagcagctcaagagattattccgaacgaagaggtgttggaatcattgactttcgttgcaccggttgaggagacagacgcaatagaggcagaggtagaagctctgcaggagatagtcgctactgaggagattgcggagcaggctgttcgttcttatacctacacggtctatcgtgatggcgtgaagattgcttcaggattgactgagcccacttttctcgatgaagatgttcctgccggcgaacatacctactgcgtagaagtacagtatcagggaggcgtatccgacaaagtatgcgtggacgtagaggtgaaggacttcaaaccggttaccaatctcaccggaactgcttccaatgacgaagtttctttggactgggacggtgtggaagagaaagctgaagagccggcaagtgataaagcagtcagctacaacgtctacaagaatggaaccttgatcggtaatacagctgaaactcattatgtggagaccggtgtagccaatggtacatacatctacgaagtggaagtaaagtatcctgacggtgtatctccgaaggtggctgtaaccgtgaccgtgaccaacagctcattgagcaatgtagatggacaggctccttacacattgcgagtagaaggcaagaagattattgcggaagcccatggtatgatcacgctctacgacatcaacggacgtaccgtggccgtagccccgaatcgattggaatacatggcgcaaaccggtttctatgcagtgcgcttcgatgtggggaataaacaccatgtatcgaaaatacaagtaagataaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 12 Min: 211 Max: 1089 Len: 879 Subject: UniRef90_Q9XBU9 Cluster: Immunoreactive 32 kD antigen PG25; n=1; Porphyromonas gingivalis|Rep: Immunoreactive 32 kD antigen PG25 - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-164 bit: 582.0 Len: 879 Query Start:211 Query End:1089 Subject Strand: null Subject Start: 1 Subject End: 293 .................................................................................................................................................................................................................. M K Q N Y F K R V C S L L W L V L P M L I M P L E V A A Q E I I P N E E V L E S L T F V A P V E E T D A I E A E V E A L Q E I V A T E E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K D F K P V T N L T G T A S N D E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................. M K Q N Y F K R V C S L L W L V L P M L I M P L E V A A Q E I I P N E E V L E S L T F V A P V E E T D A I E A E V E A L Q E I V A T E E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K D F K P V T N L T G T A S N D E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... Subject: UniRef90_P72194 Cluster: Lys-gingipain; n=5; Porphyromonas gingivalis|Rep: Lys-gingipain - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-19 bit: 99.8 Len: 255 Query Start:412 Query End:666 Subject Strand: null Subject Start: 878 Subject End: 965 ........................................................................................................................................................................................................................................................................................................................................................................................................................... E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................... E V E D D S P A S Y T Y T V Y R D G T K I Q E G L T A T T F E E D G V A A G N H E Y C V E V K Y T A G V S P K V C K D V T V E G S N E F A P V Q N L T G S A V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-16 bit: 90.1 Len: 378 Query Start:712 Query End:1089 Subject Strand: null Subject Start: 1599 Subject End: 1723 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... T Y T V Y R D G T K I Q E G L T E T T Y R D A G M S A Q S H E Y C V E V K Y A A G V S P K V C V D Y I P - - D G V A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G Y Y A V M V V V D G K S Y V E K L A I K .................................................................................................................................................................................................................................................... HSP 3 e-value: 8.0E-16 bit: 87.8 Len: 252 Query Start:439 Query End:690 Subject Strand: null Subject Start: 1340 Subject End: 1425 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S L D W D G V E E K A E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K V C V N V T I N P T Q F N P V K N L K A Q P D G G D V V L K W E A P S G K R G E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 1.0E-11 bit: 74.3 Len: 234 Query Start:436 Query End:669 Subject Strand: null Subject Start: 1597 Subject End: 1686 ................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D - - - - - - V E V K D F K P V T - - - - - - N L T G T A S N D E V S L D W D G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ................................................................................................................................................................................................................................................................................................................................................................................................................................................... S Y T Y T V Y R D G T K I Q E G L T E T T Y R D A G M S A Q S H E Y C V E V K Y A A G V S P K V C V D Y I P D G V A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_O07442 Cluster: Lysine-specific cysteine proteinase; n=5; Porphyromonas gingivalis|Rep: Lysine-specific cysteine proteinase - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 5.0E-19 bit: 98.6 Len: 255 Query Start:412 Query End:666 Subject Strand: null Subject Start: 878 Subject End: 965 ........................................................................................................................................................................................................................................................................................................................................................................................................................... E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................... E V E D D S P A S Y T Y T V Y R D G T K I K E G L T A T T F E E D G V A A G N H E Y C V E V K Y T A G V S P K V C K D V T V E G S N E F A P V Q N L T G S S V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-17 bit: 93.2 Len: 429 Query Start:661 Query End:1089 Subject Strand: null Subject Start: 1591 Subject End: 1732 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W I N L D D V V I T S G N A P S Y T Y T I Y R N N T Q I A S G V T E T T Y R D P D L A T G F Y T Y G V K V V Y P N G E S A I E T A T L N I T - - S L A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G H Y A V M V V V D G K S Y V E K L A V K .................................................................................................................................................................................................................................................... HSP 3 e-value: 3.0E-14 bit: 82.8 Len: 252 Query Start:439 Query End:690 Subject Strand: null Subject Start: 1341 Subject End: 1428 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S - - L D W D G V E E K A E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K K C V N V T V N S T Q F N P V Q N L T A E Q A P N S M D A I L K W N A P A S K R A E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q51845 Cluster: Hemagglutinin A precursor; n=3; Porphyromonas gingivalis|Rep: Hemagglutinin A precursor - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-17 bit: 93.6 Len: 228 Query Start:439 Query End:666 Subject Strand: null Subject Start: 869 Subject End: 946 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K E C V N V T V D P V Q F N P V Q N L T G S A V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-17 bit: 93.6 Len: 228 Query Start:439 Query End:666 Subject Strand: null Subject Start: 1325 Subject End: 1402 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K E C V N V T V D P V Q F N P V Q N L T G S A V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 2.0E-17 bit: 93.6 Len: 228 Query Start:439 Query End:666 Subject Strand: null Subject Start: 1781 Subject End: 1858 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K E C V N V T V D P V Q F N P V Q N L T G S A V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 4 e-value: 2.0E-17 bit: 93.2 Len: 429 Query Start:661 Query End:1089 Subject Strand: null Subject Start: 2487 Subject End: 2628 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W I N L D D V V I T S G N A P S Y T Y T I Y R N N T Q I A S G V T E T T Y R D P D L A T G F Y T Y G V K V V Y P N G E S A I E T A T L N I T - - S L A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G H Y A V M V V V D G K S Y V E K L A V K .................................................................................................................................................................................................................................................... HSP 5 e-value: 5.0E-15 bit: 85.1 Len: 246 Query Start:421 Query End:666 Subject Strand: null Subject Start: 410 Subject End: 494 .................................................................................................................................................................................................................................................................................................................................................................................................................................... E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - - D F K P V T N L T G T A S N D E V S L D W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................... E G S S N D Y T Y T V Y R D N V V I A Q N L A A T T F N Q E N V A P G Q Y N Y C V E V K Y T A G V S P K V C K D V T V E G S N E F A H V Q N L T G S A V G Q K V T L K W D ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 6 e-value: 7.0E-15 bit: 84.7 Len: 252 Query Start:439 Query End:690 Subject Strand: null Subject Start: 2237 Subject End: 2324 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S - - L D W D G V E E K A E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K V C V N V T I N P T Q F N P V Q N L T A E Q A P N S M D A I L K W N A P A S K R A E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_P72196 Cluster: TonB-linked adhesin precursor; n=1; Porphyromonas gingivalis|Rep: TonB-linked adhesin precursor - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-17 bit: 93.2 Len: 429 Query Start:661 Query End:1089 Subject Strand: null Subject Start: 956 Subject End: 1097 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W I N L D D V V I T S G N A P S Y T Y T I Y R N N T Q I A S G V T E T T Y R D P D L A T G F Y T Y G V K V V Y P N G E S A I E T A T L N I T - - S L A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G H Y A V M V V V D G K S Y V E K L A V K .................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-14 bit: 82.8 Len: 252 Query Start:439 Query End:690 Subject Strand: null Subject Start: 706 Subject End: 793 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S - - L D W D G V E E K A E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K K C V N V T V N S T Q F N P V Q N L T A E Q A P N S M D A I L K W N A P A S K R A E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_P28784 Cluster: Gingipain R1 precursor; n=9; Porphyromonas gingivalis|Rep: Gingipain R1 precursor - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-16 bit: 90.9 Len: 426 Query Start:664 Query End:1089 Subject Strand: null Subject Start: 852 Subject End: 991 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D G T E L T I S E G G G S D - Y T Y T V Y R D G T K I K E G L T E T T Y R D A G M S A Q S H E Y C V E V K Y A A G V S P K V C V D Y I P - - D G V A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G Y Y A V M V V V D G K S Y V E K L A V K .................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-11 bit: 74.3 Len: 255 Query Start:415 Query End:669 Subject Strand: null Subject Start: 858 Subject End: 954 .............................................................................................................................................................................................................................................................................................................................................................................................................................. I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D - - - - - - V E V K D F K P V T - - - - - - N L T G T A S N D E V S L D W D G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................................................................................................. I S E G G G S D Y T Y T V Y R D G T K I K E G L T E T T Y R D A G M S A Q S H E Y C V E V K Y A A G V S P K V C V D Y I P D G V A D V T A Q K P Y T L T V V G K T I T V T C Q G E A M I Y D M N G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_P46071 Cluster: Protease prtH; n=2; Porphyromonas gingivalis|Rep: Protease prtH - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-15 bit: 86.7 Len: 252 Query Start:439 Query End:690 Subject Strand: null Subject Start: 274 Subject End: 359 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K - - D F K P V T N L T G T A S N D E V S L D W D G V E E K A E E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G T K I K E G L T E T T F E E D G V A T G N H E Y C V E V K Y T A G V S P K K C V N V T V N S T Q F N P V K N L K A Q P D G G D V V L K W E A P S A K K T E ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-15 bit: 85.5 Len: 414 Query Start:664 Query End:1077 Subject Strand: null Subject Start: 518 Subject End: 653 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K ................................................................................................................................................................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... D G T D M E V E D D - S P A S Y T Y T V Y R D G T K I K E G L T E T T Y R D A G L S A Q S H E Y C V E V K Y T A G V S P K V C V D Y I P - - D G V E D V T V Q K P H T L T V V G K T I T V S W Q G E A M I Y D M N G R R L A A G R N T V V Y T A Q G G Y Y A V M V V V D G K S Y V E E ................................................................................................................................................................................................................................................................ HSP 3 e-value: 5.0E-13 bit: 78.6 Len: 258 Query Start:412 Query End:669 Subject Strand: null Subject Start: 523 Subject End: 611 ........................................................................................................................................................................................................................................................................................................................................................................................................................... E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V - - - E V K D F K P V T N L T G T A S N D E V S L D W D G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................... E V E D D S P A S Y T Y T V Y R D G T K I K E G L T E T T Y R D A G L S A Q S H E Y C V E V K Y T A G V S P K V C V D Y I P D G V E D V T V Q K P H T L T V V G K T I T V S W Q G ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7MUZ4 Cluster: Hemagglutinin, putative; n=2; Porphyromonas gingivalis|Rep: Hemagglutinin, putative - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-14 bit: 84.0 Len: 447 Query Start:643 Query End:1089 Subject Strand: null Subject Start: 204 Subject End: 352 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. D E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N - T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G - Q A P Y T L R V E G K K I I A E A H - G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. D E V S I L Y T P L P R R A P C P H P G - G Y T Y S V F R D G Q K I A S G L S A L A Y I D T D V P Y G T Q D Y C V Q V N Y L Q G D S Y K V C K N I V V A N S A - - N I Y G A D K P F A L T V V G K T I V A S A F K G E I T L Y D I R G R L I A S G C D T L R Y K A E N G F Y L I K I Q V N G T V Y T E K I Q I Q .................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-8 bit: 62.4 Len: 159 Query Start:439 Query End:597 Subject Strand: null Subject Start: 225 Subject End: 277 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y T Y S V F R D G Q K I A S G L S A L A Y I D T D V P Y G T Q D Y C V Q V N Y L Q G D S Y K V C K N I V V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_P95493 Cluster: Gingipain R2 precursor; n=2; Porphyromonas gingivalis|Rep: Gingipain R2 precursor - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 8.0E-9 bit: 64.7 Len: 471 Query Start:619 Query End:1089 Subject Strand: null Subject Start: 590 Subject End: 736 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N L T G T A S N D E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M - I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V R .................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... N I S A S A Q T F E V A C D Y N G A I A T L S D D G D - - M V G T A I V K D G K A I I K L N E S I A D E T N L T L T V V G Y N K V T V I K D - - - - - - - - - V K V E G T S I A D V A N D K P Y T V A V S G K T I T V E S P A A G L T I F D M N G R R V A T A K N R M V F E A Q N G V Y A V R I A T E G K T Y T E K V I V K .................................................................................................................................................................................................................................................... Subject: UniRef90_A3DET8 Cluster: Cellulose 1,4-beta-cellobiosidase; n=1; Clostridium thermocellum ATCC 27405|Rep: Cellulose 1,4-beta-cellobiosidase - Clostridium thermocellum (strain ATCC 27405 / DSM 1237) HSP 1 e-value: 3.0E-6 bit: 56.2 Len: 567 Query Start:304 Query End:870 Subject Strand: null Subject Start: 500 Subject End: 685 ............................................................................................................................................................................................................................................................................................................... I P N E E V L E S L T F V A P V E E T D A I E A E V E A L Q E I V A T E E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D - V P A G E H T Y C V E - - - - V Q Y Q G G V S D K V C V D V E V K D F K P V T - - N L T G T A S N D - E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................... I I K E E V I D S - - - - E P P S V P T N L Q V V S K T L T T V T L Q W D T S E D N V N V E G Y E I Y R N G I R V G N S R T L - S Y I D H G L V P N T E Y T Y T V R A Y D A V R N L S D F S E A V K V R T D V D N E P P T A P K N L G I S S R T D T S V T L T W S A S T D N A A - - - - - - V T G Y K I Y R N G V N I A D T V N T R Y T D Y D L E P G T Y S Y Y V K A F D A S G N V S D V S N T V V F D N ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q4KTS9 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 6.0E-6 bit: 55.1 Len: 252 Query Start:835 Query End:1086 Subject Strand: null Subject Start: 209 Subject End: 291 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D I N G R T V A V A P N R L E Y M A Q T G F Y A V R F D V G N K H H V S K I Q V ....................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. A P G L G V C I K G T P S G V D M I E A N K P Y S L S V S G N T I S V D A - G E V T I Y D M N A R R V A Y A E K G I S Y T A Q A G T Y V L R I V V D G M T Y V E K A V V ....................................................................................................................................................................................................................................................... Subject: UniRef90_Q8GJ03 Cluster: Putative surface protein precursor; n=3; Enterococcus faecium|Rep: Putative surface protein precursor - Enterococcus faecium (Streptococcus faecium) HSP 1 e-value: 6.0E-6 bit: 55.1 Len: 660 Query Start:310 Query End:969 Subject Strand: null Subject Start: 1158 Subject End: 1360 ..................................................................................................................................................................................................................................................................................................................... N E E V L E S L T F V A P V E E T D A I E A E V E A L Q - E I V A T E E I A E Q A V R S Y T Y T V Y R D G V K I A S G L T E P T F L D E D V P A G E H T Y C V E V Q Y Q G G V S D K V C V D V E V K D F K P V T N L T G T A S N D E V S L D W D G V E E K A E E P A S D K A V S Y N V Y K N G T L I G N T A E T H Y V E T G V A N G T Y I Y E V E V K Y P D G V S P K V A V T V T V T N S S L S N V D G Q A P Y T L R V E G K K I I A E A H G M I T L Y D ............................................................................................................................................................................................................................................................................................................................................................................ ..................................................................................................................................................................................................................................................................................................................... S D E V E V D V T V T D N R S D A D K Y E P T V E G E K V E V G G T V D L T D N V T N L P T L P E G T T V T D V T P G G T - - - - I D T N T P - G N Y E G V I E V T Y P D G T K D T V K V P V E V T D N R - - - - - - S D A D K Y E P T V E G E K V E V G G T V D L T D N V T N L P T L P E G T T V T D V T P G G T I D T N T P - G N Y E G V I E V T Y P D G T K D T V K V P V E V T D N R - S D A D - - - K Y T P M V E G E K V - - E V G G T V D L T D ............................................................................................................................................................................................................................................................................................................................................................................ catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 126 End: 350 ............................................................................................................................. M Y F Y L C V S P Y L R G E Q K Q Q D E I L I K K G D N Y E T E L L Q K S L L T A L A G F T H A Y Y A I G S S S S R D Y ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 537 End: 641 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R R S T V S G R R I R Q S M R G R R G E G L Q T G Y Q S H R N C F Q .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: + Start: 620 End: 739 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S P E L L P M T K F L W T G T V W K R K L K S R Q V I K Q S A T T S T R M E P .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 834 End: 1058 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S E G G C N R D R D Q Q L I E Q C R W T G S L H I A S R R Q E D Y C G S P W Y D H A L R H Q R T Y R G R S P E S I G I ................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 205 End: 1089 ............................................................................................................................................................................................................ M T M K Q N Y F K R V C S L L W L V L P M L I M P L E V A A Q E I I P N E E V L E S L T F V A P V E E T D A I E A E V E .................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 1108 End: 1221 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T K D K E A A S R L F F D A A S S F L L L M P V L Y F R S E S A G L E V G ................................................................................................................ Protein_Len: 49 Strand: + Start: 1137 End: 1283 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I F R C S L F F F A T H A R I V F P V G I C R I G G G V K N K G F R T D G E R L S Q L L I D W W .................................................. Protein_Len: 60 Strand: + Start: 1127 End: 1333 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R R D Y F S M Q P L L F C Y S C P Y C I S G R N L Q D W R W G E K Q R L S D G W R K V V S A S N R L V V R W S L G K G Protein_Len: 60 Strand: - Start: 1035 End: 1265 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Y L L Y K G R V L S L S A A D L N N K S A A E E K K S S M G T N Y K R D S D A P N S T P H F V F A K P R I A F P Q R M .................................................................... Protein_Len: 42 Strand: - Start: 974 End: 1099 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. R V Y R P R L G S D I P I C P A F R N R H L A S R H P S Y V G H I S F V L L I F C M .......................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 877 End: 1083 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ V C Q S Y F A L L N N R F G M T H D R E V V D V S T G H G Y G R I S Q F V H R L G T E I C H A E I H P I F V M Y R F Y M .......................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 713 End: 910 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ H F R S R Y Y L Q F E N H P S R H L W H Y M C R R L P L L T D Q R H I E S P P Q L R S R S W C S M S C H L H V P E K C M ....................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 52 Strand: - Start: 558 End: 713 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. P P T D S L T H T S T S T F S K L G T V L R V P V A E L S S T E K S Q S P T S S F A S S G A L S L A T M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: - Start: 481 End: 822 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ V F N R Q V P V T H F L F S F L R C T I F C D A V V D V L I S G Q D T I C S F S M I H L G T Y G I T C V D V F H F Y L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 58 Strand: - Start: 407 End: 580 ...................................................................................................................................................................................................................................................................................................................................................................................................................... Q P S Q P A P Q E N K Y R C P R D H H R S S Q K L I S Q A W K E R H L H E Q R R V Y R S R L L V T D P L R I R C L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: - Start: 331 End: 462 .......................................................................................................................................................................................................................................................................................................................................... Q S E N C R N L L C V C Y L C L Y F S Q L L Y D S S L L N R L L S N T R I G V R D I T M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 297 End: 416 ........................................................................................................................................................................................................................................................................................................ S I I G F S S T N S D N V K T A G T S S V S A I S A S T S A R C S I T A V S S M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 84 Start: 461 End: 477 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGTGAAGATTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -15.6 Tail_Score: -5.19212 Start: 1120 End: 1160 Full_Region: CCCCTGACTAAAGAC AAAGAGGCTGCGTCGAGA TTATT TTTCGATGCAGCCTCTTC TTTTTTGCTACTCAT ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGGCTGCGTCGAGATTATTTTTCGATGCAGCCTCTTC............................................................................................................................................................................. TransTerm Strand: - Conf: 95 HP_score: -12.9 Tail_Score: -4.36903 Start: 1123 End: 1157 Full_Region: agtagcaaaaaagaa gaggctgcatcgaaa aataa tctcgacgcagcctc tttgtctttagtcag ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaggctgcatcgaaaaataatctcgacgcagcctc................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -17.3 Tail_Score: -4.68456 Start: 1123 End: 1157 Full_Region: CTGACTAAAGACAAA GAGGCTGCGTCGAGA TTATT TTTCGATGCAGCCTC TTCTTTTTTGCTACT ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTGCGTCGAGATTATTTTTCGATGCAGCCTC................................................................................................................................................................................ Find igs database================================================ Query_seq: PG2197:PG2199|PG2197:PG2199:hypothetical protein:ABC transporter, ATP-binding protein, putative:-><-:2303543..2304875 1333 catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc Intra-Species Hit: Count: 1 Min: 1 Max: 1333 Len: 1333 Subject: NC_002950_PG2197_PG2199|hypothetical protein:ABC transporter, ATP-binding protein, putative|POSITIVE:NEGATIVE|[2303543,2304875]|1333 HSP 1 e-value: 1.0E-135 bit: 484.0 Len: 244 Query Start:1090 Query End:1333 Subject Strand: POSITIVE Subject Start: 1090 Subject End: 1333 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcagatactttcccctgactaaagacaaagaggctgcgtcgagattatttttcgatgcagcctcttcttttttgctactcatgcccgtattgtatttccggtcggaatctgcaggattggaggtggggtgaaaaacaaaggctttcggacggatggcgaaaggttgtctcagcttctaatagattggtggtgagatggtctcttggtaaaggaggagagaagagaggggggaggttgagc HSP 2 e-value: 1.0E-115 bit: 416.0 Len: 210 Query Start:1 Query End:210 Subject Strand: POSITIVE Subject Start: 1 Subject End: 210 catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataact................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... catcagtcttttgacctaaaagagaacctccttgctcctgattgacttcaattttgtcgaagaaaaaggattccgattcctgcgtcatacaaactttttaggttgaagaatagcttgccggcgaaatatatttttatctttgtgtatcaccttatttaagaggcgaacagaagcaacaagatgagatactaattaaaaaaggagataact................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAUCAGUCUUUUGACCUAAAAGAGAACCUCCUUGCUCCUGAUUGACUUCAAUUUUGUCGAAGAAAAAGGAUUCCGAUUCCUGCGUCAUACAAACUUUUUAGGUUGAAGAAUAGCUUGCCGGCGAAAUAUAUUUUUAUCUUUGUGUAUCACCUUAUUUAAGAGGCGAACAGAAGCAACAAGAUGAGAUACUAAUUAAAAAAGGAGAUAACUAUGAAACAGAACUACUUCAAAAGAGUCUGCUCACUGCUUUGGCUGGUUUUACCCAUGCUUAUUAUGCCAUUGGAAGUAGCAGCUCAAGAGAUUAUUCCGAACGAAGAGGUGUUGGAAUCAUUGACUUUCGUUGCACCGGUUGAGGAGACAGACGCAAUAGAGGCAGAGGUAGAAGCUCUGCAGGAGAUAGUCGCUACUGAGGAGAUUGCGGAGCAGGCUGUUCGUUCUUAUACCUACACGGUCUAUCGUGAUGGCGUGAAGAUUGCUUCAGGAUUGACUGAGCCCACUUUUCUCGAUGAAGAUGUUCCUGCCGGCGAACAUACCUACUGCGUAGAAGUACAGUAUCAGGGAGGCGUAUCCGACAAAGUAUGCGUGGACGUAGAGGUGAAGGACUUCAAACCGGUUACCAAUCUCACCGGAACUGCUUCCAAUGACGAAGUUUCUUUGGACUGGGACGGUGUGGAAGAGAAAGCUGAAGAGCCGGCAAGUGAUAAAGCAGUCAGCUACAACGUCUACAAGAAUGGAACCUUGAUCGGUAAUACAGCUGAAACUCAUUAUGUGGAGACCGGUGUAGCCAAUGGUACAUACAUCUACGAAGUGGAAGUAAAGUAUCCUGACGGUGUAUCUCCGAAGGUGGCUGUAACCGUGACCGUGACCAACAGCUCAUUGAGCAAUGUAGAUGGACAGGCUCCUUACACAUUGCGAGUAGAAGGCAAGAAGAUUAUUGCGGAAGCCCAUGGUAUGAUCACGCUCUACGACAUCAACGGACGUACCGUGGCCGUAGCCCCGAAUCGAUUGGAAUACAUGGCGCAAACCGGUUUCUAUGCAGUGCGCUUCGAUGUGGGGAAUAAACACCAUGUAUCGAAAAUACAAGUAAGAUAAAGCAGAUACUUUCCCCUGACUAAAGACAAAGAGGCUGCGUCGAGAUUAUUUUUCGAUGCAGCCUCUUCUUUUUUGCUACUCAUGCCCGUAUUGUAUUUCCGGUCGGAAUCUGCAGGAUUGGAGGUGGGGUGAAAAACAAAGGCUUUCGGACGGAUGGCGAAAGGUUGUCUCAGCUUCUAAUAGAUUGGUGGUGAGAUGGUCUCUUGGUAAAGGAGGAGAGAAGAGAGGGGGGAGGUUGAGC ......(((((((...))))))).(((((((((.(((((..((..((((...((((((.........(((((((((....((((((.(((...((((.......))))....(.(((((((((....(((((((((((.((.(((.((.((((......)))).))))).))......(((.(((..............(((..((((..(((((.(((..(((((((......(((((.((....(((..(((((......(((.((.......))...))).....(((((..(((.(((.(((((((((......)).))))))).)))..)))..))))).)))))..))).)))))))((.......)).)))))))..(((((((((....((((....))))......)))))))))...))))))))..)))).)))...(((((.(((.(((.((((.......))))))).))).)))))......))).))).)))))))))))...))))))))).)....(((((.((((((.(((..((((((....(((...(((..((.....((((....))))....))..)))......(((((((.(((.((((((((...((...(((((.((.......)).)))))..))..))))).))).(((..(((((.(..(((((((((......(((.....)))......((((......))))..)))).)))))..).)))))....)))......))).)))))))...)))..)))))).))).)))))).)))))..)))..((((.(..(((((((((.((((..((((..((((..(((((.((((.(((...(((..(((.(((((((....(((.....)))....)))))))...)))..)))............((....))...))))))).)))))...)))).))))..)))).))))((.(((....))).)).)))).)..).))))..))))))..((((.....((((((((((.(((((((((((.......).))))..)))))).......(((.((...((((((.........((......))...(((((((((((((((((.....)))))))))))))))))....))))))..)).))).))))))))))..)))))))))))))........((((((...((.....))....)))))).))))))((.(((.(((..((((((.(..((((....)))).).))))))..))).))).))..))))..))..)).))).))))))))).... (-419.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUCAACCUCCCCCCUCUCUUCUCUCCUCCUUUACCAAGAGACCAUCUCACCACCAAUCUAUUAGAAGCUGAGACAACCUUUCGCCAUCCGUCCGAAAGCCUUUGUUUUUCACCCCACCUCCAAUCCUGCAGAUUCCGACCGGAAAUACAAUACGGGCAUGAGUAGCAAAAAAGAAGAGGCUGCAUCGAAAAAUAAUCUCGACGCAGCCUCUUUGUCUUUAGUCAGGGGAAAGUAUCUGCUUUAUCUUACUUGUAUUUUCGAUACAUGGUGUUUAUUCCCCACAUCGAAGCGCACUGCAUAGAAACCGGUUUGCGCCAUGUAUUCCAAUCGAUUCGGGGCUACGGCCACGGUACGUCCGUUGAUGUCGUAGAGCGUGAUCAUACCAUGGGCUUCCGCAAUAAUCUUCUUGCCUUCUACUCGCAAUGUGUAAGGAGCCUGUCCAUCUACAUUGCUCAAUGAGCUGUUGGUCACGGUCACGGUUACAGCCACCUUCGGAGAUACACCGUCAGGAUACUUUACUUCCACUUCGUAGAUGUAUGUACCAUUGGCUACACCGGUCUCCACAUAAUGAGUUUCAGCUGUAUUACCGAUCAAGGUUCCAUUCUUGUAGACGUUGUAGCUGACUGCUUUAUCACUUGCCGGCUCUUCAGCUUUCUCUUCCACACCGUCCCAGUCCAAAGAAACUUCGUCAUUGGAAGCAGUUCCGGUGAGAUUGGUAACCGGUUUGAAGUCCUUCACCUCUACGUCCACGCAUACUUUGUCGGAUACGCCUCCCUGAUACUGUACUUCUACGCAGUAGGUAUGUUCGCCGGCAGGAACAUCUUCAUCGAGAAAAGUGGGCUCAGUCAAUCCUGAAGCAAUCUUCACGCCAUCACGAUAGACCGUGUAGGUAUAAGAACGAACAGCCUGCUCCGCAAUCUCCUCAGUAGCGACUAUCUCCUGCAGAGCUUCUACCUCUGCCUCUAUUGCGUCUGUCUCCUCAACCGGUGCAACGAAAGUCAAUGAUUCCAACACCUCUUCGUUCGGAAUAAUCUCUUGAGCUGCUACUUCCAAUGGCAUAAUAAGCAUGGGUAAAACCAGCCAAAGCAGUGAGCAGACUCUUUUGAAGUAGUUCUGUUUCAUAGUUAUCUCCUUUUUUAAUUAGUAUCUCAUCUUGUUGCUUCUGUUCGCCUCUUAAAUAAGGUGAUACACAAAGAUAAAAAUAUAUUUCGCCGGCAAGCUAUUCUUCAACCUAAAAAGUUUGUAUGACGCAGGAAUCGGAAUCCUUUUUCUUCGACAAAAUUGAAGUCAAUCAGGAGCAAGGAGGUUCUCUUUUAGGUCAAAAGACUGAUG ...............((((((...............)))))).((((.........(((((..(((....(((((((.((((((.........))))))...))))))).......((((((..(((((..((((((((((.(..((((((.(((((...(((((((......(((((((((((.((((.........)))).))))))))))).......((((((((...((((((((..((((((((.(((((((((((.....((((......((((..(((((.(((((..((...(....).)).)))))..((.....)).)))))..))))(((((((.((((.....))))....)))))))..(((((((..((((..(((((..((((........)))).........((((((((...(((.....)))...)))))))).....)))))..))))...)))))))........)))).)))))))))))..)).))))))..............(((.((((((.........((((.(((((((..(((......(((((((.((((..........(((((......)))))..((((.(((((((((..(((............)))...)))))).........))).)))).)))).....)))))))..(((((((((....)))))))))...)))..))))))..).)))).........)))))).)))........).)))))))...))))))))...((((((((....)).))))))....((((((.(((((..(((((..((((..((..((((...((.....(((((....))))).(((..((((......))))..)))........))..))))..))...................((((.((....((((((.......)))))).....((((..(.((.......)).)..)))).)).))))....((((((((........))).)))))..))))..(((((((((((.(...((((..........(((......)))))))..).))).))))).)))...)))))..))))).....(((.((((((............((((.(.......).))))..(((((((((........)))))).)))...))))))...))).....))))))..))))))).....))).....))))))))....).))..))))))))......((((((.....)))))).....)))))....))))))..)))..))))).........)))) (-364.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 446 1029 982 70 11 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 415 1219 1171 72 12 NC_002950:PG1043|5end_ferrous_iron_transport_protein_B_1112852..1113082_NEGATIVE 415 1028 986 48 1 NC_002950:PG0577|5end_phospho-N-acetylmuramoyl-pentapeptide-_transferase_633197..633427_POSITIVE 407 1020 975 194 136 NC_002950:PG1248|5end_hypothetical_protein_1326532..1326762_NEGATIVE 405 420 373 66 20 NC_002950:PG0186|5end_lipoprotein_RagB_221412..221642_POSITIVE 403 1327 1282 228 170 NC_002950:PG2060|5end_thymidylate_synthase_2157573..2157803_POSITIVE 403 1327 1282 207 149 NC_002950:PG0759|5end_TPR_domain_protein_810785..811015_NEGATIVE 402 1259 1211 137 73 NC_002950:PG0517|5end_hypothetical_protein_562097..562327_NEGATIVE 401 1159 1121 76 38 NC_002950:PG1268|5end_hypothetical_protein_1347371..1347601_POSITIVE 400 1009 962 65 6 NC_002950:PG1407|5end_nitroimidazole_resistance_protein,_putative_1491648..1491878_NEGATIVE 395 1230 1181 86 31 NC_002950:PG1042|5end_glycogen_synthase,_putative_1110638..1110868_NEGATIVE 391 1326 1281 132 79 NC_002950:PG1712|5end_alpha-1,2-mannosidase_family_protein_1801325..1801555_NEGATIVE 385 1160 1121 177 134 NC_002950:PG0480|5end_precorrin-2_C20-methyltransferase,_putative_521319..521549_NEGATIVE 384 1327 1285 48 1 NC_002950:PG0938|5end_calcium-transporting_ATPase_1000385..1000615_NEGATIVE 383 1288 1242 70 20 NC_002950:PG0842|5end_mobilizable_transposon,_hypothetical_protein,_putative_904874..905104_NEGATIVE 383 430 381 69 11 NC_002950:PG0309|5end_thiamine_biosynthesis_lipoprotein_ApbE_345023..345253_NEGATIVE 383 1000 956 212 168 NC_002950:PG0215|5end_hypothetical_protein_251460..251690_POSITIVE 382 395 353 207 169 NC_002950:PG2207|5end_hypothetical_protein_2320161..2320391_NEGATIVE 380 1310 1265 143 96 NC_002950:PG0451|5end_CBS_domain_protein_491519..491749_POSITIVE 379 386 342 71 32 NC_002950:PG1754|5end_hypothetical_protein_1839679..1839909_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 428 434 392 115 64 NC_002950:PG0762|3end_trigger_factor,_putative_814215..814365_POSITIVE 426 960 913 140 80 NC_002950:PG1022|3end_hypothetical_protein_1085098..1085248_POSITIVE 426 1154 1114 56 14 NC_002950:PG0535|3end_hypothetical_protein_585956..586106_NEGATIVE 423 1167 1121 71 22 NC_002950:PG0159|3end_endopeptidase_PepO_181095..181245_NEGATIVE 413 1218 1171 76 12 NC_002950:PG0334|3end_glycosyl_transferase,_group_2_family_protein_368792..368942_NEGATIVE 412 1169 1123 62 20 NC_002950:PG2170|3end_sugar_transporter_2276685..2276835_NEGATIVE 401 968 922 127 72 NC_002950:PG1858|3end_flavodoxin_1956538..1956688_NEGATIVE 388 1162 1121 50 7 NC_002950:PG0619|3end_alkyl_hydroperoxide_reductase,_F_subunit_672731..672881_POSITIVE 387 1330 1294 58 16 NC_002950:PG0422|3end_hypothetical_protein_461931..462081_NEGATIVE 385 1160 1121 64 21 NC_002950:PG0481|3end_2-amino-3-ketobutyrate_coenzyme_A_ligase_521432..521582_NEGATIVE 383 1288 1242 73 23 NC_002950:PG0843|3end_hypothetical_protein_904871..905021_NEGATIVE 383 430 381 72 14 NC_002950:PG0310|3end_nitroreductase_family_protein_345020..345170_NEGATIVE 382 1037 994 110 66 NC_002950:PG2041|3end_hypothetical_protein_2139235..2139385_NEGATIVE 380 1310 1265 146 99 NC_002950:PG0450|3end_hypothetical_protein_491602..491752_POSITIVE 379 386 342 53 14 NC_002950:PG1753|3end_selenide,_water_dikinase_1839741..1839891_POSITIVE 379 1326 1281 88 19 NC_002950:PG0948|3end_AMP_nucleosidase_1008747..1008897_POSITIVE 379 428 385 72 13 NC_002950:PG0752|3end_uracil_phosphoribosyltransferase_798397..798547_POSITIVE 379 879 831 90 29 NC_002950:PG0093|3end_HlyD_family_secretion_protein_108643..108793_NEGATIVE 378 437 391 83 39 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 377 1058 1015 126 85 NC_002950:PG1301|3end_hypothetical_protein_1379106..1379256_NEGATIVE