Origin IGS: ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcattcttgcgcgtgagcatcttcgagtccgtgtagatgtccgtacttgctgcgagctgcagtattgcaaaggtgtgatggaagcagcaataagcaatgtgcttctgaatgcccgaagctgcaatcgaataccttagaaggcgatgcgtcataacgaggccggaaactccgtatataaggcgataaatttccgtatataagaaaatttatttccgtatatacacaaatttatttccgtatatacgaaaaaatatttccgcatatgcggaaatctcgctaccttcgtggtgcgataaaacagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatgaacttaattatctggttattaaacactttactatctcgatttgattgctgttttatcgcaccacgaaggtagcgagatttccgcatatgcggaaatattttttcgtatatacggaaataaatttgtgtatatacggaaataaattttcttatatacggaaatttatcgccttatatacggagtttccggcctcgttatgacgcatcgccttctaaggtattcgattgcagcttcgggcattcagaagcacattgcttattgctgcttccatcacacctttgcaatactgcagctcgcagcaagtacggacatctacacggactcgaagatgctcacgcgcaagaatgctccacaacccaaatcaatagcaaccgactgaagtcgataaacccggggaatctgtcgttaggccttacttttccaatgaccaatccgggataaccttaagcaaccatgtctttcgatattgaaatggcttgatttataacgaagacattaaccccacgtagttctcttatatggagattgcaaagaggataaccatttgcctgcagagtcgttattgttacctttgccccatctcacctaataataaataggactaaaaaagaaagggggaaacc Mask Tandem Repeat Region ================================================ ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcattcttgcgcgtgagcatcttcgagtccgtgtagatgtccgtacttgctgcgagctgcagtattgcaaaggtgtgatggaagcagcaataagcaatgtgcttctgaatgcccgaagctgcaatcgaataccttagaaggcgatgcgtcataacgaggccggaaactccgtatataaggcgataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggaaatctcgctaccttcgtggtgcgataaaacagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Find is-nt database================================================ Query_seq: PG2150:PG2152|PG2150:PG2152:LysM domain protein:DNA-binding protein, histone-like family:<-->:2259263..2259889 627 ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcattcttgcgcgtgagcatcttcgagtccgtgtagatgtccgtacttgctgcgagctgcagtattgcaaaggtgtgatggaagcagcaataagcaatgtgcttctgaatgcccgaagctgcaatcgaataccttagaaggcgatgcgtcataacgaggccggaaactccgtatataaggcgataaatttccgtatataagaaaatttatttccgtatatacacaaatttatttccgtatatacgaaaaaatatttccgcatatgcggaaatctcgctaccttcgtggtgcgataaaacagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2150:PG2152|PG2150:PG2152:LysM domain protein:DNA-binding protein, histone-like family:<-->:2259263..2259889 627 ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcattcttgcgcgtgagcatcttcgagtccgtgtagatgtccgtacttgctgcgagctgcagtattgcaaaggtgtgatggaagcagcaataagcaatgtgcttctgaatgcccgaagctgcaatcgaataccttagaaggcgatgcgtcataacgaggccggaaactccgtatataaggcgataaatttccgtatataagaaaatttatttccgtatatacacaaatttatttccgtatatacgaaaaaatatttccgcatatgcggaaatctcgctaccttcgtggtgcgataaaacagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2150:PG2152|PG2150:PG2152:LysM domain protein:DNA-binding protein, histone-like family:<-->:2259263..2259889 627 ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcattcttgcgcgtgagcatcttcgagtccgtgtagatgtccgtacttgctgcgagctgcagtattgcaaaggtgtgatggaagcagcaataagcaatgtgcttctgaatgcccgaagctgcaatcgaataccttagaaggcgatgcgtcataacgaggccggaaactccgtatataaggcgataaatttccgtatataagaaaatttatttccgtatatacacaaatttatttccgtatatacgaaaaaatatttccgcatatgcggaaatctcgctaccttcgtggtgcgataaaacagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 7 Min: 278 Max: 573 Len: 296 Subject: UniRef90_Q7MXC9 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 5.0E-11 bit: 70.1 Len: 132 Query Start:442 Query End:573 Subject Strand: null Subject Start: 41 Subject End: 84 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y R T T K V A R F P H M R K Y F F V Y T E I N L C I Y G N K F S Y I R K F I A L Y T E ...................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... F Y R T K K V A K F P H M R K Y I F V Y T P I N F L I Y G N I F P Y I H K S L S L Y T Q ...................................................... Subject: UniRef90_Q93GE9 Cluster: Hypothetical protein; n=1; Prevotella loescheii|Rep: Hypothetical protein - Prevotella loescheii HSP 1 e-value: 3.0E-7 bit: 57.4 Len: 141 Query Start:278 Query End:418 Subject Strand: null Subject Start: 341 Subject End: 387 ..................................................................................................................................................................................................................................................................................... R L L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................... R P L R A W I E K A G I Q K H L S F H C F R H T F A T L Q L A N G T D I Y T V S K M L G H T N ................................................................................................................................................................................................................. Subject: UniRef90_Q7MVZ4 Cluster: Mobilizable transposon, int protein; n=1; Porphyromonas gingivalis|Rep: Mobilizable transposon, int protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-6 bit: 55.5 Len: 135 Query Start:278 Query End:412 Subject Strand: null Subject Start: 298 Subject End: 342 ..................................................................................................................................................................................................................................................................................... L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ....................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................... L K K W I K Q A G I M K H I T F H C F R H S Y A V I Q I S L G T D I Y T V S K M L T H K N ....................................................................................................................................................................................................................... Subject: UniRef90_Q64WZ8 Cluster: Tyrosine type site-specific recombinase; n=1; Bacteroides fragilis|Rep: Tyrosine type site-specific recombinase - Bacteroides fragilis HSP 1 e-value: 3.0E-6 bit: 54.3 Len: 135 Query Start:278 Query End:412 Subject Strand: null Subject Start: 343 Subject End: 387 ..................................................................................................................................................................................................................................................................................... L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ....................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................... L K K W V E S A G I K K K I T Y H C F R H T F A T L Q L S S S T D I Y T V S K M L G H T N ....................................................................................................................................................................................................................... Subject: UniRef90_Q1XXZ2 Cluster: Phage integrase; n=1; Flavobacterium johnsoniae UW101|Rep: Phage integrase - Flavobacterium johnsoniae UW101 HSP 1 e-value: 8.0E-6 bit: 52.8 Len: 141 Query Start:278 Query End:418 Subject Strand: null Subject Start: 341 Subject End: 387 ..................................................................................................................................................................................................................................................................................... R L L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................... R P L K K W V L S A G I K K N I T F H C F R H T F A T L Q L S S G T D I Y T V S K M L G H T N ................................................................................................................................................................................................................. Subject: UniRef90_Q1XJ26 Cluster: Phage integrase; n=1; Flavobacterium johnsoniae UW101|Rep: Phage integrase - Flavobacterium johnsoniae UW101 HSP 1 e-value: 8.0E-6 bit: 52.8 Len: 141 Query Start:278 Query End:418 Subject Strand: null Subject Start: 315 Subject End: 361 ..................................................................................................................................................................................................................................................................................... R L L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................... R A L P V W I A R A G I V K H I T F H C F R H T Y A T L Q I A S G T D I F T V S K M M G H K S ................................................................................................................................................................................................................. Subject: UniRef90_Q1XU88 Cluster: Phage integrase; n=1; Flavobacterium johnsoniae UW101|Rep: Phage integrase - Flavobacterium johnsoniae UW101 HSP 1 e-value: 8.0E-6 bit: 52.8 Len: 141 Query Start:278 Query End:418 Subject Strand: null Subject Start: 341 Subject End: 387 ..................................................................................................................................................................................................................................................................................... R L L R Y S I A A S G I Q K H I A Y C C F H H T F A I L Q L A A S T D I Y T D S K M L T R K N ................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................... R P L K K W V E S A G I K K N I T F H C F R H T F A T L Q L S S G T D I Y T V S K M L G H T N ................................................................................................................................................................................................................. ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcgtcataacgaggccggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 61 End: 177 ............................................................ M T T L Q A N G Y P L C N L H I R E L R G V N V F V I N Q A I S I S K D M V A .................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 193 End: 288 ................................................................................................................................................................................................ M V I G K V R P N D R F P G F I D F S R L L L I W V V E H S C A ................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 269 End: 409 ............................................................................................................................................................................................................................................................................ M W S I L A R E H L R V R V D V R T C C E L Q Y C K G V M E A A I S N V L L N A R S C N R I P .......................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 322 End: 426 ................................................................................................................................................................................................................................................................................................................................. M L R A A V L Q R C D G S S N K Q C A S E C P K L Q S N T L E G D A S ......................................................................................................................................................................................................... Protein_Len: 43 Strand: + Start: 462 End: 590 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S V Y K K I Y F R I Y T N L F P Y I R K N I S A Y A E I S L P S W C D K T A I K S R ..................................... Protein_Len: 52 Strand: + Start: 472 End: 627 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M R K F I S V Y T Q I Y F R I Y E K I F P H M R K S R Y L R G A I K Q Q S N R D S K V F N N Q I I K F I Protein_Len: 33 Strand: - Start: 485 End: 583 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K R I Y V F K N G Y I R F F I E A Y A S I E S G E H H S L V A I M ............................................ Protein_Len: 51 Strand: - Start: 427 End: 579 .......................................................................................................................................................................................................................................................................................................................................................................................................................................... L S A P F E T Y L A I F K R I Y S F K N G Y I C L N I E T Y V F F Y K R M H P F R A V K T T R Y F L M ................................................ Protein_Len: 49 Strand: - Start: 259 End: 405 .................................................................................................................................................................................................................................................................. Q N P N H L M R A R S C R R T R T S T R V Q Q S S C Y Q L P T I S A A I L L T S R F A R L Q L R M .............................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 248 End: 481 ....................................................................................................................................................................................................................................................... D T Y I D T S A A L Q L I A F T H H F C C Y A I H K Q I G S A A I S Y R L L R H T M V L G S V G Y I L R Y I E T Y L F M .................................................................................................................................................. Protein_Len: 60 Strand: - Start: 186 End: 503 ......................................................................................................................................................................................... S R A A T N C L H S P L L L L C H A E S H G F S C D F V K S P S A D Y R P R F S R I Y P S L N G Y I L F N I E T Y V C M ............................................................................................................................ ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcgtcataacgaggccggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcgtcataacgaggccggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 71 HP_score: -4.4 Tail_Score: -4.84311 Start: 481 End: 528 Full_Region: ccgcatatgcggaaa tattttttcgtatatacggaaa taaa tttgtgtatatacggaaataaa ttttcttatatacgg ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tattttttcgtatatacggaaataaatttgtgtatatacggaaataaa................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -9.6 Tail_Score: -2.8763 Start: 485 End: 524 Full_Region: atatgcggaaatatt ttttcgtatatacggaaa taaa tttgtgtatatacggaaa taaattttcttatat ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttcgtatatacggaaataaatttgtgtatatacggaaa....................................................................................................... TransTerm Strand: - Conf: 89 HP_score: -12.4 Tail_Score: -2.75389 Start: 507 End: 546 Full_Region: acgaaggtagcgaga tttccgcatatgcggaaa tatt ttttcgtatatacggaaa taaatttgtgtatat ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttccgcatatgcggaaatattttttcgtatatacggaaa................................................................................. TransTerm Strand: - Conf: 91 HP_score: -7.3 Tail_Score: -5.24989 Start: 527 End: 548 Full_Region: ccacgaaggtagcga gatttccgc atat gcggaaata ttttttcgtatatac ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatttccgcatatgcggaaata............................................................................... TransTerm Strand: - Conf: 93 HP_score: -9.9 Tail_Score: -4.24891 Start: 529 End: 546 Full_Region: acgaaggtagcgaga tttccgc atat gcggaaa tattttttcgtatat ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttccgcatatgcggaaa................................................................................. Find igs database================================================ Query_seq: PG2150:PG2152|PG2150:PG2152:LysM domain protein:DNA-binding protein, histone-like family:<-->:2259263..2259889 627 ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcgtcataacgaggccggaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Intra-Species Hit: Count: 1 Min: 1 Max: 627 Len: 627 Subject: NC_002950_PG2150_PG2152|LysM domain protein:DNA-binding protein, histone-like family|NEGATIVE:POSITIVE|[2259263,2259889]|627 HSP 1 e-value: 1.0E-155 bit: 549.0 Len: 277 Query Start:1 Query End:277 Subject Strand: POSITIVE Subject Start: 1 Subject End: 277 ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagc.............................................................................................................................................................................................................................................................................................................................................................. ggtttccccctttcttttttagtcctatttattattaggtgagatggggcaaaggtaacaataacgactctgcaggcaaatggttatcctctttgcaatctccatataagagaactacgtggggttaatgtcttcgttataaatcaagccatttcaatatcgaaagacatggttgcttaaggttatcccggattggtcattggaaaagtaaggcctaacgacagattccccgggtttatcgacttcagtcggttgctattgatttgggttgtggagc.............................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-22 bit: 107.0 Len: 54 Query Start:574 Query End:627 Subject Strand: POSITIVE Subject Start: 574 Subject End: 627 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cagcaatcaaatcgagatagtaaagtgtttaataaccagataattaagttcatt Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGUUUCCCCCUUUCUUUUUUAGUCCUAUUUAUUAUUAGGUGAGAUGGGGCAAAGGUAACAAUAACGACUCUGCAGGCAAAUGGUUAUCCUCUUUGCAAUCUCCAUAUAAGAGAACUACGUGGGGUUAAUGUCUUCGUUAUAAAUCAAGCCAUUUCAAUAUCGAAAGACAUGGUUGCUUAAGGUUAUCCCGGAUUGGUCAUUGGAAAAGUAAGGCCUAACGACAGAUUCCCCGGGUUUAUCGACUUCAGUCGGUUGCUAUUGAUUUGGGUUGUGGAGCAUUCUUGCGCGUGAGCAUCUUCGAGUCCGUGUAGAUGUCCGUACUUGCUGCGAGCUGCAGUAUUGCAAAGGUGUGAUGGAAGCAGCAAUAAGCAAUGUGCUUCUGAAUGCCCGAAGCUGCAAUCGAAUACCUUAGAAGGCGAUGCGUCAUAACGAGGCCGGAAACUCCGUAUAUAAGGCGAUAAAUUUCCGUAUAUAAGAAAAUUUAUUUCCGUAUAUACACAAAUUUAUUUCCGUAUAUACGAAAAAAUAUUUCCGCAUAUGCGGAAAUCUCGCUACCUUCGUGGUGCGAUAAAACAGCAAUCAAAUCGAGAUAGUAAAGUGUUUAAUAACCAGAUAAUUAAGUUCAUU ......((((..((((.......((((........)))).)))).))))...(((((((......(((((..(..(((((.((....))..)))))..((((.......)))).....)..))))).(((((((((.(((((((......))))..))).)).))))))).)))))))..((((((((((((((.(((.((((...........)))).))).)))...)))))...((((((....))))))((((((((((((((....(((.((((((..((((..(..(((((.((....))...)))))..)....(((((....(((((..(((..((....))..)))...)))))....))))).))))....)))))))))..((((..((((..((((...((((((((.((.((.....)).)).(....)..((((((((.((.(((((((((..(((((((.((((.....))))..)))))))..))))))))).)).)))))))).......((((((((....)))))))).))))...))))..))))))))....))))..)))))))..))))))).........))))))................. (-180.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUGAACUUAAUUAUCUGGUUAUUAAACACUUUACUAUCUCGAUUUGAUUGCUGUUUUAUCGCACCACGAAGGUAGCGAGAUUUCCGCAUAUGCGGAAAUAUUUUUUCGUAUAUACGGAAAUAAAUUUGUGUAUAUACGGAAAUAAAUUUUCUUAUAUACGGAAAUUUAUCGCCUUAUAUACGGAGUUUCCGGCCUCGUUAUGACGCAUCGCCUUCUAAGGUAUUCGAUUGCAGCUUCGGGCAUUCAGAAGCACAUUGCUUAUUGCUGCUUCCAUCACACCUUUGCAAUACUGCAGCUCGCAGCAAGUACGGACAUCUACACGGACUCGAAGAUGCUCACGCGCAAGAAUGCUCCACAACCCAAAUCAAUAGCAACCGACUGAAGUCGAUAAACCCGGGGAAUCUGUCGUUAGGCCUUACUUUUCCAAUGACCAAUCCGGGAUAACCUUAAGCAACCAUGUCUUUCGAUAUUGAAAUGGCUUGAUUUAUAACGAAGACAUUAACCCCACGUAGUUCUCUUAUAUGGAGAUUGCAAAGAGGAUAACCAUUUGCCUGCAGAGUCGUUAUUGUUACCUUUGCCCCAUCUCACCUAAUAAUAAAUAGGACUAAAAAAGAAAGGGGGAAACC ((((..(((..((((..(((((.....((.((((.((((..((((((...(((((...((((.(((..((((((((((((((((((((....))))))))....(((((((((((.((..((((((((.((((((((.(((((.....))))))))))))).))))))))..)).)))))))))))........))))))..........))))))...)))...)))).)))))...((((((((..((((.....))))..((((((.............(((((....)))))...)))))).(..(((((((((.(........).))))).)).))..)..)))))).))......))))))....((...((((....)))).....((((((......((((((.((..........))))))))...))))))..........)).............)))).)))).))...))))).))))..))).))))..((((.(....((((........(((((.(((((((.((((((..((((....))))...)))))).)...))))))...))))).((((........))))........)))).)))))..... (-170.89) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 945 90 41 181 132 NC_002950:PG2150|5end_LysM_domain_protein_2259172..2259402_NEGATIVE 426 459 416 58 13 NC_002950:PG2077|5end_hypothetical_protein_2177391..2177621_NEGATIVE 406 330 283 230 170 NC_002950:PG1481|5end_conjugative_transposon_protein_TraG_1558447..1558677_NEGATIVE 401 350 302 52 7 NC_002950:PG1056|5end_hypothetical_protein_1122980..1123210_POSITIVE 382 330 284 57 9 NC_002950:PG0125|5end_hypothetical_protein_146786..147016_NEGATIVE 376 330 281 69 17 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 374 458 411 223 162 NC_002950:PG2055|5end_dihydroorotate_dehydrogenase_2153060..2153290_NEGATIVE 374 280 231 153 94 NC_002950:PG0994|5end_hypothetical_protein_1054921..1055151_POSITIVE 372 337 295 45 3 NC_002950:PG2174|5end_hypothetical_protein_2282578..2282808_NEGATIVE 372 318 273 53 3 NC_002950:PG1324|5end_Holliday_junction_resolvase_1403431..1403661_NEGATIVE 371 328 281 220 151 NC_002950:PG0782|5end_MotA/TolQ/ExbB_proton_channel_family_protein_834530..834760_NEGATIVE 370 569 531 52 13 NC_002950:PG1294|5end_ferrous_iron_transport_protein_B_1372047..1372277_POSITIVE 367 319 273 153 107 NC_002950:PG1570|5end_rhodanese-like_domain_protein_1648965..1649195_NEGATIVE 365 309 263 76 25 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 364 320 273 183 122 NC_002950:PG1959|5end_ribosomal_protein_L33_2048405..2048635_NEGATIVE 363 217 175 135 86 NC_002950:PG0039|5end_hypothetical_protein_47637..47867_POSITIVE 362 327 284 73 6 NC_002950:PG0143|5end_hydrolase,_carbon-nitrogen_family_166625..166855_NEGATIVE 358 337 291 201 146 NC_002950:PG0335|5end_tRNA_delta(2)-isopentenylpyrophosphate_transferase_370706..370936_NEGATIVE 356 340 295 68 4 NC_002950:PG0297|5end_hypothetical_protein_335518..335748_NEGATIVE 356 458 411 114 68 NC_002950:PG0289|5end_hypothetical_protein_322860..323090_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 404 347 304 60 8 NC_002950:PG1881|3end_hypothetical_protein_1978046..1978196_POSITIVE 401 258 211 93 38 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 382 330 284 60 12 NC_002950:PG0126|3end_type_I_phosphodiesterase/nucleotide_pyrophosphatase_family_protein_146783..146933_NEGATIVE 370 360 314 81 32 NC_002950:PG0333|3end_hypothetical_protein_368811..368961_POSITIVE 365 302 269 78 49 NC_002950:PG1244|3end_ISPg1,_transposase_1320699..1320849_POSITIVE 365 302 269 78 49 NC_002950:PG0549|3end_ISPg1,_transposase_605987..606137_NEGATIVE 365 302 269 78 49 NC_002950:PG0460|3end_ISPg1,_transposase_503102..503252_POSITIVE 360 307 267 82 32 NC_002950:PG1593|3end_shikimate_kinase_1672143..1672293_POSITIVE 353 328 282 108 69 NC_002950:PG0344|3end_purple_acid_phosphatase_378543..378693_NEGATIVE 349 439 394 72 3 NC_002950:PG1219|3end_hypothetical_protein_1297062..1297212_POSITIVE 348 439 393 68 22 NC_002950:PG1653|3end_hypothetical_protein_1736458..1736608_POSITIVE 347 318 275 61 11 NC_002950:PG1663|3end_ABC_transporter,_ATP-binding_protein_1745868..1746018_POSITIVE 346 437 393 60 22 NC_002950:PG2123|3end_hypothetical_protein_2230243..2230393_POSITIVE 343 339 293 136 100 NC_002950:PG0707|3end_TonB-dependent_receptor,_putative_761086..761236_NEGATIVE 342 319 275 73 20 NC_002950:PG0737|3end_hypothetical_protein_786546..786696_POSITIVE 342 327 281 55 2 NC_002950:PG0144|3end_hypothetical_protein_166643..166793_NEGATIVE 339 329 281 151 90 NC_002950:PG2065|3end_conserved_hypothetical_protein_TIGR00048_2162105..2162255_POSITIVE 339 308 262 150 93 NC_002950:PG0928|3end_response_regulator_985062..985212_NEGATIVE 336 350 301 118 62 NC_002950:PG1034|3end_ABC_transporter,_ATP-binding_protein_1096977..1097127_POSITIVE 335 288 242 132 93 NC_002950:PG2185|3end_transporter,_putative_2291933..2292083_NEGATIVE