Origin IGS: gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttcgtaatcgaatcggtgcttgccttgtggcagcgacttgagattcagtacgtatcttccggatgatgccatttcgtgtaagatgaaaaactttgcaaaagtaacgctttacgatgatattacaaacagtttcatgtcttttgtcccgtctgccttcgagtcgtttttcccgaaagcattcgatcgaccgtaaaatcgggggatccccttattcgatcttatggaggaagtctgcctctttgctctcgtcgcgagtgagagagggtacagcgcgttcggcgacaaggtcttataaggttttgactttgtgttgatttacagccgatttctttttggtttcccaagcctgaaagcgtggcgcgagaaaatttttcttttggcgcgagaatgaaaaaaatctcgcgccacaacgaaaaaaaagtcgcgcgtattttgcagaaaagcggttccgctttttctccttttcacgctcgtgattttcaccccctgctccggctgcacacccctctctcctgcagaatgaatatctttcaaatacccccccccgcaaaaaaacaatcaggacacagagtggggtgtatatgccactctatgtcccgattgcgttaggagggaaatgttgc Mask Tandem Repeat Region ================================================ gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Find is-nt database================================================ Query_seq: PG2136:PG2139|PG2136:PG2139:hypothetical protein:hypothetical protein:->->:2245165..2245787 623 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2136:PG2139|PG2136:PG2139:hypothetical protein:hypothetical protein:->->:2245165..2245787 623 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2136:PG2139|PG2136:PG2139:hypothetical protein:hypothetical protein:->->:2245165..2245787 623 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 66 End: 305 ................................................................. M F F C G G G Y L K D I H S A G E R G V Q P E Q G V K I T S V K R R K S G T A F L Q N T R D F F F V V A R D F F H S R A .............................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 41 End: 331 ........................................ M Y T P L C V L I V F L R G G V F E R Y S F C R R E G C A A G A G G E N H E R E K E K K R N R F S A K Y A R L F F R C G .................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 193 End: 402 ................................................................................................................................................................................................ M R A T F F S L W R E I F F I L A P K E K F S R A T L S G L G N Q K E I G C K S T Q S Q N L I R P C R R T R C T L S H S ............................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 309 End: 512 .................................................................................................................................................................................................................................................................................................................... M N T K S K P Y K T L S P N A L Y P L S L A T R A K R Q T S S I R S N K G I P R F Y G R S N A F G K N D S K A D G T K D ............................................................................................................... Protein_Len: 60 Strand: + Start: 428 End: 622 ........................................................................................................................................................................................................................................................................................................................................................................................................................................... M L R S I E C F R E K R L E G R R D K R H E T V C N I I V K R Y F C K V F H L T R N G I I R K I R T E S Q V A A T R Q A . Protein_Len: 57 Strand: - Start: 434 End: 604 ................................................................................................................................................................................................................................................................................................................................................................................................................................................. P R D F A K P F F S E F A S P V F S M F S N T I D D Y L T V K A F N K M K C S I A D D P L Y T S F R L D S G C P M ................... Protein_Len: 30 Strand: - Start: 332 End: 421 ........................................................................................................................................................................................................................................................................................................................................... L V K D G F A S Y G R E S A V L A F L C V E E M L D F L P M .......................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 313 End: 510 ........................................................................................................................................................................................................................................................................................................................ Y S R T A S R A T G E R V R S S L L S A S K R W L I S Y P S G G I K R D I S H K R S F R S S P L R S L L C S V T Q L I M ................................................................................................................. Protein_Len: 60 Strand: - Start: 18 End: 299 ................. T H L R L L P H F D R A H F P S F A S G S K Q L I R A V K K E N H R S I K K M R A G F S F N E R A V S E P K P F W F S M .................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 2 End: 100 . L M E R R V C D P C L T A Y V G W E T D Q N N K Q P P P Y K F S M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 1 End: 111 C C K G G L A I P V Y L P M Y V G S Q T R I T K K R P P T N S L Y E N Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -17.3 Tail_Score: -5.40072 Start: 21 End: 68 Full_Region: ATTTCCCTCCTAACG CAATCGGGACATAGAGTGG CATATACACC CCACTCTGTGTCCTGATTG TTTTTTTGCGGGGGG ....................CAATCGGGACATAGAGTGGCATATACACCCCACTCTGTGTCCTGATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -10.9 Tail_Score: -3.17075 Start: 24 End: 65 Full_Region: cccgcaaaaaaacaa tcaggacacagagtggggt gtat atgccactctatgtcccga ttgcgttaggaggga .......................tcaggacacagagtggggtgtatatgccactctatgtcccga.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 91 HP_score: -11.3 Tail_Score: -4.36914 Start: 207 End: 255 Full_Region: AATACGCGCGACTTT TTTTTCGTTGTGGCGCGAGATT TTTTTC ATTCTCGCGCCAAAAGAAAAA TTTTCTCGCGCCACG ..............................................................................................................................................................................................................TTTTTCGTTGTGGCGCGAGATTTTTTTCATTCTCGCGCCAAAAGAAAAA................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 49 HP_score: -4.9 Tail_Score: -2.76261 Start: 215 End: 270 Full_Region: CGACTTTTTTTTCGT TGTGGCGCGAGATTTTTTTCATT CTCGCGCCA AAAGAAAAATTTTCTCGCGCCACG CTTTCAGGCTTGGGA ......................................................................................................................................................................................................................TGTGGCGCGAGATTTTTTTCATTCTCGCGCCAAAAGAAAAATTTTCTCGCGCCACG................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 72 HP_score: -8.2 Tail_Score: -3.74542 Start: 416 End: 426 Full_Region: atcgaccgtaaaatc gggg gat cccc ttattcgatcttatg ...............................................................................................................................................................................................................................................................................................................................................................................................................................gggggatcccc..................................................................................................................................................................................................... TransTerm Strand: + Conf: 73 HP_score: -4.0 Tail_Score: -4.87626 Start: 523 End: 533 Full_Region: CATCGTAAAGCGTTA CTTT TGC AAAG TTTTTCATCTTACAC ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGCAAAG.......................................................................................... Find igs database================================================ Query_seq: PG2136:PG2139|PG2136:PG2139:hypothetical protein:hypothetical protein:->->:2245165..2245787 623 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattgtttttttgcgggggggggtatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa Intra-Species Hit: Count: 1 Min: 1 Max: 623 Len: 623 Subject: NC_002950_PG2136_PG2139|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2245165,2245787]|623 HSP 1 e-value: 0.0 bit: 975.0 Len: 537 Query Start:87 Query End:623 Subject Strand: POSITIVE Subject Start: 87 Subject End: 623 ......................................................................................tatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacnnnnnnnncgttgtggcgcgagannnnnnncattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa ......................................................................................tatttgaaagatattcattctgcaggagagaggggtgtgcagccggagcagggggtgaaaatcacgagcgtgaaaaggagaaaaagcggaaccgcttttctgcaaaatacgcgcgacttttttttcgttgtggcgcgagatttttttcattctcgcgccaaaagaaaaattttctcgcgccacgctttcaggcttgggaaaccaaaaagaaatcggctgtaaatcaacacaaagtcaaaaccttataagaccttgtcgccgaacgcgctgtaccctctctcactcgcgacgagagcaaagaggcagacttcctccataagatcgaataaggggatcccccgattttacggtcgatcgaatgctttcgggaaaaacgactcgaaggcagacgggacaaaagacatgaaactgtttgtaatatcatcgtaaagcgttacttttgcaaagtttttcatcttacacgaaatggcatcatccggaagatacgtactgaatctcaagtcgctgccacaaggcaagcaccgattcgattacgaa HSP 2 e-value: 2.0E-30 bit: 135.0 Len: 68 Query Start:1 Query End:68 Subject Strand: POSITIVE Subject Start: 1 Subject End: 68 gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gcaacatttccctcctaacgcaatcgggacatagagtggcatatacaccccactctgtgtcctgattg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCAACAUUUCCCUCCUAACGCAAUCGGGACAUAGAGUGGCAUAUACACCCCACUCUGUGUCCUGAUUGUUUUUUUGCGGGGGGGGGUAUUUGAAAGAUAUUCAUUCUGCAGGAGAGAGGGGUGUGCAGCCGGAGCAGGGGGUGAAAAUCACGAGCGUGAAAAGGAGAAAAAGCGGAACCGCUUUUCUGCAAAAUACGCGCGACUUUUUUUUCGUUGUGGCGCGAGAUUUUUUUCAUUCUCGCGCCAAAAGAAAAAUUUUCUCGCGCCACGCUUUCAGGCUUGGGAAACCAAAAAGAAAUCGGCUGUAAAUCAACACAAAGUCAAAACCUUAUAAGACCUUGUCGCCGAACGCGCUGUACCCUCUCUCACUCGCGACGAGAGCAAAGAGGCAGACUUCCUCCAUAAGAUCGAAUAAGGGGAUCCCCCGAUUUUACGGUCGAUCGAAUGCUUUCGGGAAAAACGACUCGAAGGCAGACGGGACAAAAGACAUGAAACUGUUUGUAAUAUCAUCGUAAAGCGUUACUUUUGCAAAGUUUUUCAUCUUACACGAAAUGGCAUCAUCCGGAAGAUACGUACUGAAUCUCAAGUCGCUGCCACAAGGCAAGCACCGAUUCGAUUACGAA ((...((..(((((((((.((((((((((((((((((((..........))))))))))))))))))))....))).))))))..))...((.(((((....(((.(((((((((((((((.((((((((((.((((((.(((.....))).((((((....(.((((((.(((....))))))))).).......((((((....((((((....((((((((((..........))))))))))...)))))).....))))))))))))...(((.((((....)))).........((((..............))))....))).......))))))..))).....)))))))))))))))...(((.((((((....(.((((((...((..((.((((((((.....(((....))))))))))).))..)).((..((((((((((........))))))))))..)).................)))))).)....)).))))...)))....))))))).))).....))))).)).......))......(....)...((((.((((((....((.((((((....))).))))).))))))..)))).. (-225.54) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCGUAAUCGAAUCGGUGCUUGCCUUGUGGCAGCGACUUGAGAUUCAGUACGUAUCUUCCGGAUGAUGCCAUUUCGUGUAAGAUGAAAAACUUUGCAAAAGUAACGCUUUACGAUGAUAUUACAAACAGUUUCAUGUCUUUUGUCCCGUCUGCCUUCGAGUCGUUUUUCCCGAAAGCAUUCGAUCGACCGUAAAAUCGGGGGAUCCCCUUAUUCGAUCUUAUGGAGGAAGUCUGCCUCUUUGCUCUCGUCGCGAGUGAGAGAGGGUACAGCGCGUUCGGCGACAAGGUCUUAUAAGGUUUUGACUUUGUGUUGAUUUACAGCCGAUUUCUUUUUGGUUUCCCAAGCCUGAAAGCGUGGCGCGAGAAAAUUUUUCUUUUGGCGCGAGAAUGAAAAAAAUCUCGCGCCACAACGAAAAAAAAGUCGCGCGUAUUUUGCAGAAAAGCGGUUCCGCUUUUUCUCCUUUUCACGCUCGUGAUUUUCACCCCCUGCUCCGGCUGCACACCCCUCUCUCCUGCAGAAUGAAUAUCUUUCAAAUACCCCCCCCCGCAAAAAAACAAUCAGGACACAGAGUGGGGUGUAUAUGCCACUCUAUGUCCCGAUUGCGUUAGGAGGGAAAUGUUGC ((((....))))...((((..(((..(..(((((((((((((...(((.((((((((((((((((....)).)))).).)))))).........(((((((.........((.((((.(((......))).)))))))))))))..))))))..))))))))).......(((.((((...((((((..((((....((((...))))))))))))))....(((((.......))))).)))).)))(((((((((.(((((((..(((.((..(((((....(((((.((((((((....))))))))..)))))...))))).......((((....)))))))))...(((..(((((.((...((((((((.((((((((((.(......).)))))))))).)).))))))....)).)))))....))).((((((((....))))))))..))))))).)))))))))..........))))..)))).)))).....((((((((((....((((.....))))......................(((((.(((((.(((((((.((....)).))))))).))))).))))).).)))))))))........ (-201.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 541 240 197 84 41 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 496 270 221 92 43 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 496 270 221 80 31 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 486 279 236 123 80 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 482 270 221 78 29 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 456 158 119 87 43 NC_002950:PG0767|5end_4-alpha-glucanotransferase_820533..820763_NEGATIVE 455 278 231 118 72 NC_002950:PG1617|5end_hypothetical_protein_1697755..1697985_NEGATIVE 450 157 111 154 96 NC_002950:PG0651|5end_HDIG_domain_protein_703622..703852_NEGATIVE 448 379 336 107 59 NC_002950:PG1398|5end_hypothetical_protein_1480694..1480924_POSITIVE 444 200 154 230 182 NC_002950:PG2127|5end_hypothetical_protein_2233552..2233782_NEGATIVE 436 280 235 183 137 NC_002950:PG0132|5end_hypothetical_protein_152879..153109_POSITIVE 427 147 106 75 24 NC_002950:PG1379|5end_ABC_transporter,_periplasmic_substrate-binding_protein,_putative_1458937..1459167_POSITIVE 422 135 103 107 65 NC_002950:PG0882|5end_hypothetical_protein_944195..944425_POSITIVE 409 139 104 83 38 NC_002950:PG1301|5end_hypothetical_protein_1379921..1380151_NEGATIVE 409 180 132 140 105 NC_002950:PG0980|5end_hypothetical_protein_1040897..1041127_POSITIVE 394 156 118 191 142 NC_002950:PG0684|5end_ABC_transporter,_permease_protein,_putative_737648..737878_POSITIVE 392 160 111 94 49 NC_002950:PG1855|5end_carboxyl-terminal_protease_1955476..1955706_NEGATIVE 389 277 240 192 155 NC_002950:PG2063|5end_hypothetical_protein_2160596..2160826_NEGATIVE 388 610 562 226 176 NC_002950:PG0680|5end_efflux_transporter,_MFP_component,_RND_family_730968..731198_POSITIVE 385 389 344 118 59 NC_002950:PG0145|5end_hypothetical_protein_167831..168061_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 603 68 21 70 23 NC_002950:PG2136|3end_hypothetical_protein_2245104..2245254_POSITIVE 505 277 235 60 17 NC_002950:PG0542|3end_hypothetical_protein_595377..595527_NEGATIVE 455 270 221 57 8 NC_002950:PG1626|3end_hypothetical_protein_1710486..1710636_POSITIVE 442 390 344 119 64 NC_002950:PG2004|3end_hypothetical_protein_2093135..2093285_NEGATIVE 409 139 104 65 20 NC_002950:PG1302|3end_hypothetical_protein_1379939..1380089_NEGATIVE 401 160 111 69 3 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 397 389 344 76 24 NC_002950:PG1723|3end_ribosomal_protein_S20_1813403..1813553_POSITIVE 396 277 239 94 56 NC_002950:PG0732|3end_hypothetical_protein_783018..783168_POSITIVE 392 160 111 86 41 NC_002950:PG1856|3end_cytidine/deoxycytidylate_deaminase_family_protein_1955484..1955634_NEGATIVE 388 258 211 149 101 NC_002950:PG1718|3end_hypothetical_protein_1806532..1806682_NEGATIVE 383 143 101 58 9 NC_002950:PG0498|3end_S-ribosylhomocysteinase_538527..538677_POSITIVE 380 158 112 62 7 NC_002950:PG0031|3end_hypothetical_protein_36905..37055_NEGATIVE 377 155 116 52 8 NC_002950:PG1380|3end_ABC_transporter,_ATP-binding_protein_1460705..1460855_POSITIVE 376 476 434 54 11 NC_002950:PG0621|3end_hypothetical_protein_676020..676170_POSITIVE 375 120 71 89 43 NC_002950:PG1326|3end_hemagglutinin,_putative_1405171..1405321_POSITIVE 374 390 342 140 72 NC_002950:PG2214|3end_hypothetical_protein_2325301..2325451_NEGATIVE 374 150 107 78 29 NC_002950:PG0955|3end_hypothetical_protein_1015865..1016015_POSITIVE 373 151 111 66 22 NC_002950:PG1179|3end_hypothetical_protein_1260341..1260491_NEGATIVE 371 142 101 140 91 NC_002950:PG1793|3end_1,4-alpha-glucan_branching_enzyme_1886008..1886158_POSITIVE 371 610 562 119 57 NC_002950:PG1391|3end_hypothetical_protein_1472961..1473111_POSITIVE