Origin IGS: tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgtcctgttcctcattatatctgatcagaaacatcctgatccggacaaaggtaaggagtaaaggcgaaaaccatctcttttcccctctggattgcttccttcctccgaagggaatcaaacggcaagtacacgtcagtaaatgatcaatgaaaaactttcgaaaaaaaagatgcatcgcttcggtaaataatgctacatttgctcccactatcgatacccacaatggggctgaccggctttgacagcgtgatgaagcggtatgtaagcatgtagtgcgtgggtggcttgcactataatctcagacatcaaaagtttaattggcgaaaataactacgctctcgctgcgtaatcgaagaatagtagattagacgcttcatcgccgccaaagtggcagcgacgagacatcgcccgagcagctttttcccgaagtagctcgatggtgcggtgctgacaaatcgggaaccgctacaggatgcttcctgcctgtggtcagatcgaacggaagataaggatcgtgcattgggtcgtttcagcctccgctcgctcacgaaaattccaactgaaactaaacatgtagaaagcatattgattccatgtttggacgagggttcaattccctccagctccaccatccgatcgggtacagacaggctgagcgcttatctgtacccgatcgttttttgtggtatgtgccaagagaaagccactttgtttgttccattttaataatctatctttgcagccgctaatacaatagcgaacgcaaataataaattcaaaaga Mask Tandem Repeat Region ================================================ tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Find is-nt database================================================ Query_seq: PG2117:PG2119|PG2117:PG2119:30S ribosomal protein S16:oxidoreductase, Gfo/Idh/MocA family:<-->:2225904..2226686 783 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2117:PG2119|PG2117:PG2119:30S ribosomal protein S16:oxidoreductase, Gfo/Idh/MocA family:<-->:2225904..2226686 783 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2117:PG2119|PG2117:PG2119:30S ribosomal protein S16:oxidoreductase, Gfo/Idh/MocA family:<-->:2225904..2226686 783 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 13 End: 171 ............ M I C V R Y C I S G C K D R L L K W N K Q S G F L L A H T T K N D R V Q I S A Q P V C T R S D G G A G G N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 54 Strand: + Start: 54 End: 215 ..................................................... M I K M E Q T K W L S L G T Y H K K R S G T D K R S A C L Y P I G W W S W R E L N P R P N M E S I C F L H V ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 48 Strand: + Start: 264 End: 407 ....................................................................................................................................................................................................................................................................... M H D P Y L P F D L T T G R K H P V A V P D L S A P H H R A T S G K S C S G D V S S L P L W R R ........................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: + Start: 328 End: 450 ....................................................................................................................................................................................................................................................................................................................................... M C Q H R T I E L L R E K A A R A M S R R C H F G G D E A S N L L F F D Y A A R A ............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 134 End: 475 ..................................................................................................................................... M S V P D R M V E L E G I E P S S K H G I N M L S T C L V S V G I F V S E R R L K R P N A R S L S S V R S D H R Q E A S .................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 466 End: 573 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K L L M S E I I V Q A T H A L H A Y I P L H H A V K A G Q P H C G Y R .................................................................................................................................................................................................................. Protein_Len: 41 Strand: + Start: 515 End: 637 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M L T Y R F I T L S K P V S P I V G I D S G S K C S I I Y R S D A S F F S K V F H .................................................................................................................................................. Protein_Len: 38 Strand: + Start: 653 End: 766 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M Y L P F D S L R R K E A I Q R G K E M V F A F T P Y L C P D Q D V S D Q I ................. Protein_Len: 60 Strand: + Start: 561 End: 782 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M W V S I V G A N V A L F T E A M H L F F R K F F I D H L L T C T C R L I P F G G R K Q S R G E K R W F S P L L L T F V . Protein_Len: 40 Strand: - Start: 644 End: 763 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K S V H V Q R K I G K P P L F C D L P S F L H N E G K S R V K T R I L I N R I M .................... Protein_Len: 31 Strand: - Start: 545 End: 637 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L R D A G N H T D I T P A F T A N N V S A I C R K K R F N K M .................................................................................................................................................. Protein_Len: 40 Strand: - Start: 210 End: 329 ................................................................................................................................................................................................................. M N L K L Q F K R S R A S A S V V W H V I R I K R E I Q G C A P L M R Y R N G M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 61 End: 339 ............................................................ S S P I S G E D L C P I L I S E V H K T E T P I K T L S R L S F R G L A R D K D E T R D S W L C S A D Q L P E R N T L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 54 Strand: - Start: 38 End: 199 ..................................... R S C L Y I I L I S C V F H S E R P V Y W L F R D P V S L R E A Q R Y G I P H H L Q L S N F G R G F M S D M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 31 Strand: - Start: 30 End: 122 ............................. Q I L P Q L S L N N F H F L C L P K R K A C V V F F S R T C M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -21.5 Tail_Score: -5.35459 Start: 108 End: 150 Full_Region: tccagctccaccatc cgatcgggtacagacaggc tgagc gcttatctgtacccgatcg ttttttgtggtatgt ...........................................................................................................cgatcgggtacagacaggctgagcgcttatctgtacccgatcg......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 86 HP_score: -14.6 Tail_Score: -2.71348 Start: 378 End: 416 Full_Region: AAAAGCTGCTCGGGC GATGTCTCGTCGCTGCCA CTT TGGCGGCGATGAAGCGTC TAATCTACTATTCTT .........................................................................................................................................................................................................................................................................................................................................................................................GATGTCTCGTCGCTGCCACTTTGGCGGCGATGAAGCGTC............................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 74 HP_score: -11.4 Tail_Score: -2.89154 Start: 380 End: 414 Full_Region: AAGCTGCTCGGGCGA TGTCTCGTCGCTGCCA CTT TGGCGGCGATGAAGCG TCTAATCTACTATTC ...........................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGTCGCTGCCACTTTGGCGGCGATGAAGCG................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 88 HP_score: -3.3 Tail_Score: -5.75945 Start: 603 End: 615 Full_Region: GTAGCATTATTTACC GAAGC GAT GCATC TTTTTTTTCGAAAGT ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGATGCATC........................................................................................................................................................................ TransTerm Strand: + Conf: 53 HP_score: -2.0 Tail_Score: -3.85362 Start: 699 End: 721 Full_Region: AGGAAGCAATCCAGA GGGGAAAA GAGATGG TTTTCGCC TTTACTCCTTACCTT ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAAAAGAGATGGTTTTCGCC.............................................................. Find igs database================================================ Query_seq: PG2117:PG2119|PG2117:PG2119:30S ribosomal protein S16:oxidoreductase, Gfo/Idh/MocA family:<-->:2225904..2226686 783 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Intra-Species Hit: Count: 1 Min: 1 Max: 783 Len: 783 Subject: NC_002950_PG2117_PG2119|30S ribosomal protein S16:oxidoreductase, Gfo/Idh/MocA family|NEGATIVE:POSITIVE|[2225904,2226686]|783 HSP 1 e-value: 0.0 bit: 1505.0 Len: 783 Query Start:1 Query End:783 Subject Strand: POSITIVE Subject Start: 1 Subject End: 783 tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcnnnnnnnncgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca tcttttgaatttattatttgcgttcgctattgtattagcggctgcaaagatagattattaaaatggaacaaacaaagtggctttctcttggcacataccacaaaaaacgatcgggtacagataagcgctcagcctgtctgtacccgatcggatggtggagctggagggaattgaaccctcgtccaaacatggaatcaatatgctttctacatgtttagtttcagttggaattttcgtgagcgagcggaggctgaaacgacccaatgcacgatccttatcttccgttcgatctgaccacaggcaggaagcatcctgtagcggttcccgatttgtcagcaccgcaccatcgagctacttcgggaaaaagctgctcgggcgatgtctcgtcgctgccactttggcggcgatgaagcgtctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagccccattgtgggtatcgatagtgggagcaaatgtagcattatttaccgaagcgatgcatcttttttttcgaaagtttttcattgatcatttactgacgtgtacttgccgtttgattcccttcggaggaaggaagcaatccagaggggaaaagagatggttttcgcctttactccttacctttgtccggatcaggatgtttctgatcagatataatgaggaacaggaca Inter-species Hit: Count: 3 Min: 416 Max: 559 Len: 144 Subject: tfor_TF0527_TF0528|prolyl endopeptidase:two-component system sensor histidine kinase|POSITIVE:POSITIVE|[552011,552496]|486 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 142 Query Start:418 Query End:559 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 216 .................................................................................................................................................................................................................................................................................................................................................................................................................................aatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgat-gtctgagattatagtgcaagccacccacgcactacatgcttacataccgcttcatcacgctgtcaaagccggtcagcccc................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................................................................................................................................................................................aatctactgtgcttcgattaagcagcgagagcgtagttattttcgccagttaaa-attggatcaaccgagattaaagtgccggccaacgacgcactgcatgcttacaaaccacttctgcccgctgtcaaaaccggtcagcccc................................................................................................................................................................................................................................ Subject: NC_006347_BF1127_BF1128|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1350671,1350862]|192 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 107 Query Start:416 Query End:522 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 159 ...............................................................................................................................................................................................................................................................................................................................................................................................................................ctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttac..................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................ctaatctactatgattcgattaagcagcaagagcgtaattagtttcgccagataaaattttgataactgagattaaagtgcaaatcaccgacgcactgcatgcttac..................................................................................................................................................................................................................................................................... Subject: NC_003228_BF1038_BF1040|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1289053,1289422]|370 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 107 Query Start:416 Query End:522 Subject Strand: NEGATIVE Subject Start: 231 Subject End: 337 ...............................................................................................................................................................................................................................................................................................................................................................................................................................ctaatctactattcttcgattacgcagcgagagcgtagttattttcgccaattaaacttttgatgtctgagattatagtgcaagccacccacgcactacatgcttac..................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................ctaatctactatgattcgattaagcagcaagagcgtaattagtttcgccagataaaattttgataactgagattaaagtgcaaatcaccgacgcactgcatgcttac..................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUAAUCUACUAUUCUUCGAUUACGCAGCGAGAGCGUAGUUAUUUUCGCCAAUUAAACUUUUGAUGUCUGAGAUUAUAGUGCAAGCCACCCACGCACUACAUGCUUACAUACCGCUUCAUCACGCUGUCAAAGCCGGUCAGCCCC .................((((((((.......))))))))......(((...........(((((..((((....((((((...........))))))....))))..........))))).(((.....))).)))....... (-24.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GGGGCUGACCGGCUUUGACAGCGUGAUGAAGCGGUAUGUAAGCAUGUAGUGCGUGGGUGGCUUGCACUAUAAUCUCAGACAUCAAAAGUUUAAUUGGCGAAAAUAACUACGCUCUCGCUGCGUAAUCGAAGAAUAGUAGAUUAG ....(((.....((((((..((((..(((((((.(((....((.(((((((((.........))))))))).....((((.......)))).....))....)))....)))).)))..))))..)))))).....)))..... (-34.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 336 139 92 62 4 NC_002950:PG0034|5end_thioredoxin_42549..42779_NEGATIVE 331 139 91 134 80 NC_002950:PG0746|5end_sensor_histidine_kinase_793903..794133_NEGATIVE 319 115 72 67 18 NC_002950:PG0430|5end_ferrodoxin_oxidoreductase_beta_subunit_467986..468216_POSITIVE 318 118 77 205 158 NC_002950:PG0289|5end_hypothetical_protein_322860..323090_POSITIVE 306 137 95 231 173 NC_002950:PG1657|5end_methylmalonyl-CoA_mutase_1739344..1739574_POSITIVE 304 104 62 181 126 NC_002950:PG0075|5end_phosphoribosylformylglycinamidine_cyclo-ligase,_putative_90438..90668_NEGATIVE 303 137 91 195 132 NC_002950:PG1211|5end_hexapeptide_transferase_family_protein_1290801..1291031_POSITIVE 301 113 75 65 16 NC_002950:PG1247|5end_3-dehydroquinate_synthase_1324444..1324674_POSITIVE 299 124 83 146 94 NC_002950:PG0374|5end_hypothetical_protein_405564..405794_NEGATIVE 298 139 96 203 162 NC_002950:PG2164|5end_peptidyl-prolyl_cis-trans_isomerase,_FKBP-type_2270125..2270355_NEGATIVE 297 137 102 221 182 NC_002950:PG1006|5end_hypothetical_protein_1066478..1066708_NEGATIVE 294 116 72 48 5 NC_002950:PG1066|5end_butyrate-acetoacetate_CoA-transferase,_subunit_A_1133521..1133751_POSITIVE 292 120 75 67 12 NC_002950:PG0452|5end_hypothetical_protein_492879..493109_POSITIVE 292 120 71 102 44 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 292 128 88 62 24 NC_002950:PG0223|5end_exonuclease_257610..257840_NEGATIVE 291 140 92 190 158 NC_002950:PG1769|5end_hypothetical_protein_1856607..1856837_POSITIVE 290 50 23 73 45 NC_002950:PG0080|5end_hypothetical_protein_93832..94062_NEGATIVE 288 137 92 52 5 NC_002950:PG1486|5end_conjugative_transposon_protein_TraA_1561166..1561396_NEGATIVE 288 114 78 127 93 NC_002950:PG1311|5end_hypothetical_protein_1389709..1389939_POSITIVE 288 140 92 218 167 NC_002950:PG0704|5end_phosphoglycerate_mutase_family_protein_758928..759158_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 339 48 5 103 51 NC_002950:PG1722|3end_hypothetical_protein_1812633..1812783_NEGATIVE 331 139 91 137 83 NC_002950:PG0747|3end_sigma-54_dependent_DNA-binding_response_regulator_793900..794050_NEGATIVE 318 100 57 121 61 NC_002950:PG1786|3end_hypothetical_protein_1875322..1875472_POSITIVE 318 136 92 150 103 NC_002950:PG1175|3end_ABC_transporter,_ATP-binding_protein,_putative_1254170..1254320_NEGATIVE 301 113 75 50 1 NC_002950:PG1246|3end_alanyl-tRNA_synthetase_1324509..1324659_POSITIVE 295 50 12 133 78 NC_002950:PG1638|3end_thioredoxin_family_protein_1718664..1718814_NEGATIVE 292 120 71 97 39 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 292 128 88 58 20 NC_002950:PG0224|3end_hypothetical_protein_257614..257764_NEGATIVE 285 138 95 132 90 NC_002950:PG0443|3end_hemagglutinin-related_protein_483147..483297_POSITIVE 281 138 111 144 112 NC_002950:PG0363|3end_hypothetical_protein_398377..398527_POSITIVE 280 100 60 50 3 NC_002950:PG0439|3end_hypothetical_protein_478810..478960_POSITIVE 280 135 106 33 2 NC_002950:PG0097|3end_hypothetical_protein_115056..115206_NEGATIVE 275 129 83 151 96 NC_002950:PG0361|3end_hypothetical_protein_395481..395631_POSITIVE 273 140 96 132 82 NC_002950:PG1483|3end_conjugative_transposon_protein_TraE_1558783..1558933_NEGATIVE 273 140 92 150 88 NC_002950:PG0162|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_184505..184655_NEGATIVE 272 140 99 61 7 NC_002950:PG1249|3end_1-acyl-sn-glycerol-3-phosphate_acetyltransferase,_putative_1326547..1326697_NEGATIVE 272 140 92 143 80 NC_002950:PG0520|3end_chaperonin_GroEL_563618..563768_NEGATIVE 271 116 71 58 6 NC_002950:PG1247|3end_3-dehydroquinate_synthase_1325585..1325735_POSITIVE 270 139 92 124 87 NC_002950:PG0340|3end_hypothetical_protein_376436..376586_POSITIVE 267 49 14 120 87 NC_002950:PG0200|3end_hypothetical_protein_238121..238271_NEGATIVE