Origin IGS: actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgctccaaaattttcccgtttgacactcctaaaaacatggcgtgggaactttttggttttggcgcggaaagcaaaaaattctcacgccacaacgaaaaaaatctcgttccattttttcagaaaattcgaactaaaatcggtgcatttttggttcggatcgatgagtcagacgtgtactgtggtcagaaaaatatcatccataaaagattcgggaattagcagagagacaggctatggctaataggatcatcgaagtgaatcatcgtctcaacaactacaaagcgcaggctaaggatcggctcaactcggagtaaggtcttgtgcaccgcaagcgacgatgtattgaacccgaggcgatctttgggcaacttaaggcgaac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gttcgccttaagttgcccaaagatcgcctcgggttcaatacatcgtcgcttgcggtgcacaagaccttactccgagttgagccgatccttagcctgcgctttgtagttgttgagacgatgattcacttcgatgatcctattagccatagcctgtctctctgctaattcccgaatcttttatggatgatatttttctgaccacagtacacgtctgactcatcgatccgaaccaaaaatgcaccgattttagttcgaattttctgaaaaaatggaacgagatttttttcgttgtggcgtgagaattttttgctttccgcgccaaaaccaaaaagttcccacgccatgtttttaggagtgtcaaacgggaaaattttggagcgtgacgtgtactgaaaagcattgtgccgagtaacgctacaacttcggtcgaggagttgcatagagtagcaatagtggggagagagacgcgatttccacgcattcgtttcttcttgcgttaaatgtccgtaaatgtcagatagagagt Mask Tandem Repeat Region ================================================ actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgctccaaaattttcccgtttgacactcctaaaaacatggcgtgggaactttttggttttggcgcggaaagcaaaaaattctcacgccacaacgaaaaaaatctcgttccattttttcagaaaattcgaactaaaatcggtgcatttttggttcggatcgatgagtcagacgtgtactgtggtcagaaaaatatcatccataaaagattcgggaattagcagagagacaggctatggctaataggatcatcgaagtgaatcatcgtctcaacaactacaaagcgcaggctaaggatcggctcaactcggagtaaggtcttgtgcaccgcaagcgacgatgtattgaacccgaggcgatctttgggcaacttaaggcgaac Find is-nt database================================================ Query_seq: PG2114:PG2116|PG2114:PG2116:hypothetical protein:hypothetical protein:<-->:2224249..2224774 526 actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgctccaaaattttcccgtttgacactcctaaaaacatggcgtgggaactttttggttttggcgcggaaagcaaaaaattctcacgccacaacgaaaaaaatctcgttccattttttcagaaaattcgaactaaaatcggtgcatttttggttcggatcgatgagtcagacgtgtactgtggtcagaaaaatatcatccataaaagattcgggaattagcagagagacaggctatggctaataggatcatcgaagtgaatcatcgtctcaacaactacaaagcgcaggctaaggatcggctcaactcggagtaaggtcttgtgcaccgcaagcgacgatgtattgaacccgaggcgatctttgggcaacttaaggcgaac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2114:PG2116|PG2114:PG2116:hypothetical protein:hypothetical protein:<-->:2224249..2224774 526 actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgctccaaaattttcccgtttgacactcctaaaaacatggcgtgggaactttttggttttggcgcggaaagcaaaaaattctcacgccacaacgaaaaaaatctcgttccattttttcagaaaattcgaactaaaatcggtgcatttttggttcggatcgatgagtcagacgtgtactgtggtcagaaaaatatcatccataaaagattcgggaattagcagagagacaggctatggctaataggatcatcgaagtgaatcatcgtctcaacaactacaaagcgcaggctaaggatcggctcaactcggagtaaggtcttgtgcaccgcaagcgacgatgtattgaacccgaggcgatctttgggcaacttaaggcgaac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 12 Min: 374 Max: 526 Len: 153 Subject: gi|52421217|ref|YP_087129.1| transposase [Bacteroides fragilis YCH46] HSP 1 e-value: 6.0E-15 bit: 77.0 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 430 Subject End: 480 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K A R G N R I I E V N H R L N Q Y K R Q A R E R L L S E E G I K H R G R R C I E P E A V F G Q M K Y N Subject: UniRef90_Q64MF7 Cluster: Transposase; n=1; Bacteroides fragilis|Rep: Transposase - Bacteroides fragilis HSP 1 e-value: 6.0E-15 bit: 77.0 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 430 Subject End: 480 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K A R G N R I I E V N H R L N Q Y K R Q A R E R L L S E E G I K H R G R R C I E P E A V F G Q M K Y N Subject: gi|29347390|ref|NP_810893.1| transposase [Bacteroides thetaiotaomicron VPI-5482] HSP 1 e-value: 2.0E-14 bit: 75.5 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 430 Subject End: 480 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K A R G N R M I E V N H R L N Q Y K R Q A R E R L L S E E G I R H R G R R C I E P E A V F G Q M K H N Subject: UniRef90_Q8A6A5 Cluster: Transposase; n=1; Bacteroides thetaiotaomicron|Rep: Transposase - Bacteroides thetaiotaomicron HSP 1 e-value: 2.0E-14 bit: 75.5 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 430 Subject End: 480 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K A R G N R M I E V N H R L N Q Y K R Q A R E R L L S E E G I R H R G R R C I E P E A V F G Q M K H N Subject: gi|53714108|ref|YP_100100.1| ISNCY family transposase [Bacteroides fragilis YCH46] HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 132 Query Start:389 Query End:520 Subject Strand: null Subject Start: 438 Subject End: 481 .................................................................................................................................................................................................................................................................................................................................................................................................... R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K ...... .................................................................................................................................................................................................................................................................................................................................................................................................... R T I E V N H R L K E Y K Q K A R E R L T S E K G S K H R G Q R C I E P E A V F G Q I K ...... Subject: gi|53715527|ref|YP_101519.1| ISNCY family transposase [Bacteroides fragilis YCH46] HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 423 Subject End: 473 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K T N R I I E V N Y N L N R H K Q K T R E K L M S E E G I Y H R G R R C I E P E A V F A Q I K H N Subject: gi|60683480|ref|YP_213624.1| putative transposase [Bacteroides fragilis NCTC 9343] HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 423 Subject End: 473 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K T N R I I E V N Y N L N R H K Q K T R E K L M S E E G I Y H R G R R C I E P E A V F A Q I K H N Subject: UniRef90_Q64NE8 Cluster: ISNCY family transposase; n=2; Bacteroides fragilis|Rep: ISNCY family transposase - Bacteroides fragilis HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 423 Subject End: 473 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K T N R I I E V N Y N L N R H K Q K T R E K L M S E E G I Y H R G R R C I E P E A V F A Q I K H N Subject: UniRef90_Q64SG4 Cluster: ISNCY family transposase; n=1; Bacteroides fragilis|Rep: ISNCY family transposase - Bacteroides fragilis HSP 1 e-value: 5.0E-11 bit: 63.9 Len: 132 Query Start:389 Query End:520 Subject Strand: null Subject Start: 438 Subject End: 481 .................................................................................................................................................................................................................................................................................................................................................................................................... R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K ...... .................................................................................................................................................................................................................................................................................................................................................................................................... R T I E V N H R L K E Y K Q K A R E R L T S E K G S K H R G Q R C I E P E A V F G Q I K ...... Subject: gi|14518341|ref|NP_116824.1| hypothetical protein MS136 [Microscilla sp. PRE1] HSP 1 e-value: 5.0E-6 bit: 47.4 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 336 Subject End: 386 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K G N R I V E I N H N L R R H K Q K V R Q N L F S E Q G L A H R A K R P W D V E A V F A A I K H N Subject: gi|14518361|ref|NP_116844.1| putative transposase [Microscilla sp. PRE1] HSP 1 e-value: 5.0E-6 bit: 47.4 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 428 Subject End: 478 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K G N R I V E I N H N L R R H K Q K V R Q N L F S E Q G L A H R A K R P W D V E A V F A A I K H N Subject: UniRef90_Q93P75 Cluster: MS156, putative transposase; n=2; Microscilla sp. PRE1|Rep: MS156, putative transposase - Microscilla sp. PRE1 HSP 1 e-value: 5.0E-6 bit: 47.4 Len: 153 Query Start:374 Query End:526 Subject Strand: null Subject Start: 428 Subject End: 478 ..................................................................................................................................................................................................................................................................................................................................................................................... Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E * G L V H R K R R C I E P E A I F G Q L K A N ..................................................................................................................................................................................................................................................................................................................................................................................... K S K G N R I V E I N H N L R R H K Q K V R Q N L F S E Q G L A H R A K R P W D V E A V F A A I K H N Find nr database================================================ Query_seq: PG2114:PG2116|PG2114:PG2116:hypothetical protein:hypothetical protein:<-->:2224249..2224774 526 actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgctccaaaattttcccgtttgacactcctaaaaacatggcgtgggaactttttggttttggcgcggaaagcaaaaaattctcacgccacaacgaaaaaaatctcgttccattttttcagaaaattcgaactaaaatcggtgcatttttggttcggatcgatgagtcagacgtgtactgtggtcagaaaaatatcatccataaaagattcgggaattagcagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 0 Inter-species Hit: Count: 2 Min: 150 Max: 344 Len: 195 Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 2.0E-12 bit: 73.9 Len: 195 Query Start:150 Query End:344 Subject Strand: null Subject Start: 11 Subject End: 75 ..................................................................................................................................................... S K I F P F D T P K N M A W E L F G F G A E S K K F S R H N E K N L V P F F Q K I R T K I G A F L V R I D E S D V Y C G Q K N I I ...................................................................................................................................................................................... ..................................................................................................................................................... S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R V F L N S S F C K Q A E A I ...................................................................................................................................................................................... Subject: UniRef90_Q7MTB1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 3.0E-7 bit: 57.0 Len: 129 Query Start:172 Query End:300 Subject Strand: null Subject Start: 2 Subject End: 44 ........................................................................................................................................................................... L L K T W R G N F L V L A R K A K N S H A T T K K I S F H F F R K F E L K S V H F W F .................................................................................................................................................................................................................................. ........................................................................................................................................................................... L P K T W R E N F F V L V R E V K N L R A T A K K I S R H F F R K Y E P Q P G V F W F .................................................................................................................................................................................................................................. actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncataaaagattcgggaattagcagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 188 End: 277 ........................................................................................................................................................................................... M G T F W F W R G K Q K I L T P Q R K K S R S I F S E N S N ......................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 15 End: 362 .............. M Y G H L T Q E E T N A W K S R L S P H Y C Y S M Q L L D R S C S V T R H N A F Q Y T S R S K I F P F D T P K N M A W E .................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 46 End: 384 ............................................. M R G N R V S L P T I A T L C N S S T E V V A L L G T M L F S T R H A P K F S R L T L L K T W R G N F L V L A R K A K N .............................................................................................................................................. Protein_Len: 35 Strand: + Start: 353 End: 457 ................................................................................................................................................................................................................................................................................................................................................................ M R E L A E R Q A M A N R I I E V N H R L N N Y K A Q A K D R L N S E ..................................................................... Protein_Len: 40 Strand: + Start: 405 End: 524 .................................................................................................................................................................................................................................................................................................................................................................................................................... M I V S T T T K R R L R I G S T R S K V L C T A S D D V L N P R R S L G N L R R .. Protein_Len: 50 Strand: - Start: 365 End: 514 ............................................................................................................................................................................................................................................................................................................................................................................ C L S L S H S I P D D F H I M T E V V V F R L S L I P E V R L L T K H V A L S S T N F G L R D K P M ............ Protein_Len: 34 Strand: - Start: 137 End: 238 ........................................................................................................................................ Y V D R E L I K G N S V G L F M A H S S K P K P A S L L F N E R W M ................................................................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 30 End: 137 ............................. R L F F R I R P F R T E R G V I A V R H L E E V S T T A N S P V I S K M ..................................................................................................................................................................................................................................................................................................................................................................................................... actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncataaaagattcgggaattagcagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncataaaagattcgggaattagcagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 91 HP_score: -10.0 Tail_Score: -4.61231 Start: 182 End: 237 Full_Region: cgagatttttttcgt tgtggcgtgagaattttttgcttt ccgcgcca aaaccaaaaagttcccacgccatg tttttaggagtgtca .....................................................................................................................................................................................tgtggcgtgagaattttttgctttccgcgccaaaaccaaaaagttcccacgccatg................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -12.6 Tail_Score: -3.91908 Start: 184 End: 235 Full_Region: agatttttttcgttg tggcgtgagaattttttgcttt ccgcgcca aaaccaaaaagttcccacgcca tgtttttaggagtgt .......................................................................................................................................................................................tggcgtgagaattttttgctttccgcgccaaaaccaaaaagttcccacgcca................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG2114:PG2116|PG2114:PG2116:hypothetical protein:hypothetical protein:<-->:2224249..2224774 526 actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncataaaagattcgggaattagcagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 149 Len: 149 Subject: NC_002950_PG2114_PG2116|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[2224249,2224774]|526 HSP 1 e-value: 8.0E-79 bit: 295.0 Len: 149 Query Start:1 Query End:149 Subject Strand: POSITIVE Subject Start: 1 Subject End: 149 actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgc......................................................................................................................................................................................................................................................................................................................................................................................... actctctatctgacatttacggacatttaacgcaagaagaaacgaatgcgtggaaatcgcgtctctctccccactattgctactctatgcaactcctcgaccgaagttgtagcgttactcggcacaatgcttttcagtacacgtcacgc......................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUCUCUAUCUGACAUUUACGGACAUUUAACGCAAGAAGAAACGAAUGCGUGGAAAUCGCGUCUCUCUCCCCACUAUUGCUACUCUAUGCAACUCCUCGACCGAAGUUGUAGCGUUACUCGGCACAAUGCUUUUCAGUACACGUCACGC ..........((((...(((.((....((((((.............((((((((....(((................)))...))))))))......((((....))))..))))))...(((.....)))..)).)))...))))... (-25.39) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCGUGACGUGUACUGAAAAGCAUUGUGCCGAGUAACGCUACAACUUCGGUCGAGGAGUUGCAUAGAGUAGCAAUAGUGGGGAGAGAGACGCGAUUUCCACGCAUUCGUUUCUUCUUGCGUUAAAUGUCCGUAAAUGUCAGAUAGAGAGU ...((((((.(((.((.....((((((((..(((((.((.(.((....)).).)).)))))...).))).)))).(..((((((((((.(((.......)))..)).))))))))..)........)).))).)))))).......... (-38.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1005 80 31 171 122 NC_002950:PG2114|5end_hypothetical_protein_2224158..2224388_NEGATIVE 389 109 66 50 1 NC_002950:PG1486|5end_conjugative_transposon_protein_TraA_1561166..1561396_NEGATIVE 385 130 83 112 68 NC_002950:PG0362|5end_hypothetical_protein_395301..395531_POSITIVE 354 135 93 52 7 NC_002950:PG0634|5end_ThiJ/PfpI_family_protein_686143..686373_POSITIVE 353 80 31 147 103 NC_002950:PG1173|5end_YkgG_family_protein_1252435..1252665_POSITIVE 347 129 88 197 145 NC_002950:PG2189|5end_aspartate_kinase_2297151..2297381_NEGATIVE 339 90 42 218 165 NC_002950:PG1803|5end_V-type_ATP_synthase_subunit_A_1896488..1896718_POSITIVE 326 73 31 156 117 NC_002950:PG2021|5end_hypothetical_protein_2114852..2115082_NEGATIVE 320 70 43 53 31 NC_002950:PG2188|5end_diaminopimelate_decarboxylase_2295781..2296011_NEGATIVE 320 106 63 197 153 NC_002950:PG1916|5end_translation_initiation_factor_IF-1_2013702..2013932_NEGATIVE 318 130 97 225 186 NC_002950:PG0888|5end_hypothetical_protein_949910..950140_POSITIVE 314 138 93 98 46 NC_002950:PG0859|5end_hypothetical_protein_917865..918095_POSITIVE 313 80 32 72 27 NC_002950:PG1256|5end_ribonuclease,_Rne/Rng_family_1334262..1334492_NEGATIVE 310 80 31 223 163 NC_002950:PG0333|5end_hypothetical_protein_367823..368053_POSITIVE 310 80 31 79 28 NC_002950:PG0268|5end_tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase_300898..301128_POSITIVE 307 138 92 74 25 NC_002950:PG1365|5end_16S_rRNA-processing_protein_1446069..1446299_NEGATIVE 307 70 32 204 165 NC_002950:PG1113|5end_integrase_1186746..1186976_NEGATIVE 304 140 97 40 1 NC_002950:PG1903|5end_hypothetical_protein_2004221..2004451_NEGATIVE 304 129 89 195 138 NC_002950:PG1753|5end_selenide,_water_dikinase_1838615..1838845_POSITIVE 303 140 92 97 41 NC_002950:PG1851|5end_phosphopantothenoylcysteine_decarboxylase/phosphopantothenate--cysteine_ligase_1951168..1951398_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 320 70 43 23 1 NC_002950:PG2189|3end_aspartate_kinase_2295811..2295961_NEGATIVE 318 138 94 134 94 NC_002950:PG0800|3end_hypothetical_protein_854719..854869_NEGATIVE 315 128 93 49 2 NC_002950:PG0413|3end_hypothetical_protein_451437..451587_NEGATIVE 314 138 93 108 56 NC_002950:PG0858|3end_hypothetical_protein_917955..918105_POSITIVE 313 60 20 138 100 NC_002950:PG2022|3end_hypothetical_protein_2114856..2115006_NEGATIVE 310 80 31 74 23 NC_002950:PG0267|3end_arginyl-tRNA_synthetase_300973..301123_POSITIVE 307 138 92 67 18 NC_002950:PG1366|3end_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_1446076..1446226_NEGATIVE 303 140 92 71 15 NC_002950:PG1852|3end_exonuclease_1951194..1951344_NEGATIVE 294 80 31 60 4 NC_002950:PG1741|3end_aspartate_ammonia-lyase_1825856..1826006_NEGATIVE 294 80 44 29 1 NC_002950:PG0791|3end_adenylate_kinase_842593..842743_NEGATIVE 294 139 102 74 33 NC_002950:PG0474|3end_low-specificity_L-threonine_aldolase_515011..515161_NEGATIVE 291 130 85 131 78 NC_002950:PG1229|3end_hypothetical_protein_1305559..1305709_NEGATIVE 289 123 89 138 102 NC_002950:PG2021|3end_hypothetical_protein_2112921..2113071_NEGATIVE 288 106 61 79 27 NC_002950:PG0164|3end_hypothetical_protein_187081..187231_NEGATIVE 286 99 51 74 20 NC_002950:PG2037|3end_hypothetical_protein_2137591..2137741_NEGATIVE 285 139 93 40 1 NC_002950:PG1618|3end_hypothetical_protein_1698669..1698819_POSITIVE 281 124 83 151 107 NC_002950:PG1074|3end_D-lysine_5,6-aminomutase,_beta_subunit_1142834..1142984_POSITIVE 277 126 85 82 37 NC_002950:PG0507|3end_hypothetical_protein_548190..548340_POSITIVE 275 127 83 66 20 NC_002950:PG0715|3end_transporter_768676..768826_NEGATIVE 273 130 82 61 2 NC_002950:PG1306|3end_metallo-beta-lactamase_family_protein_1386543..1386693_NEGATIVE