Origin IGS: actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggccaacctcgagccaaaaatctgccgattgcggtctgtgttttccgagaaaacggaacgagatttttttcgtcgtggtgcgtaaatttttcacttcccacgccaaaacgaaacagtttacgcaccacgtttttagaggtcacaaacacgaaaattttggagcgcaaaccgaccttgagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gaaatcggcacgaaaaatctaagaacggaaaaagacacctgagtcttggagtgggaatgcttgtcggaagagaatcgcccgacttctttcccgctttgaggcgatgaacagcgaactctcccgtccgatctgcgggagggtttaagacccccttatacacaagggtctctaataaactgtgaccggatccatgagagggagagtcgtcctgacaaaccctcttgtggatctttctttttttctatcggcttgaatggtggcaaaacgcaccggctcgacattcaggatgttccggcgtcggggatagctcaaggtcggtttgcgctccaaaattttcgtgtttgtgacctctaaaaacgtggtgcgtaaactgtttcgttttggcgtgggaagtgaaaaatttacgcaccacgacgaaaaaaatctcgttccgttttctcggaaaacacagaccgcaatcggcagatttttggctcgaggttggccggagatcggatcaccgaagcgaggctgatgcatcggtatatatgagccaagggatgtatctgtaggaattgacgtacttttgtccggaaccaagtccgtttttagagt Mask Tandem Repeat Region ================================================ actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggccaacctcgagccaaaaatctgccgattgcggtctgtgttttccgagaaaacggaacgagatttttttcgtcgtggtgcgtaaatttttcacttcccacgccaaaacgaaacagtttacgcaccacgtttttagaggtcacaaacacgaaaattttggagcgcaaaccgaccttgagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Find is-nt database================================================ Query_seq: PG2099:PG2100|PG2099:PG2100:ATP-dependent RNA helicase, DEAD/DEAH box family:immunoreactive 63 kDa antigen PG102:<-<-:2208023..2208616 594 actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggccaacctcgagccaaaaatctgccgattgcggtctgtgttttccgagaaaacggaacgagatttttttcgtcgtggtgcgtaaatttttcacttcccacgccaaaacgaaacagtttacgcaccacgtttttagaggtcacaaacacgaaaattttggagcgcaaaccgaccttgagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2099:PG2100|PG2099:PG2100:ATP-dependent RNA helicase, DEAD/DEAH box family:immunoreactive 63 kDa antigen PG102:<-<-:2208023..2208616 594 actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggccaacctcgagccaaaaatctgccgattgcggtctgtgttttccgagaaaacggaacgagatttttttcgtcgtggtgcgtaaatttttcacttcccacgccaaaacgaaacagtttacgcaccacgtttttagaggtcacaaacacgaaaattttggagcgcaaaccgaccttgagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2099:PG2100|PG2099:PG2100:ATP-dependent RNA helicase, DEAD/DEAH box family:immunoreactive 63 kDa antigen PG102:<-<-:2208023..2208616 594 actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggccaacctcgagccaaaaatctgccgattgcggtctgtgttttccgagaaaacggaacgagatttttttcgtcgtggtgcgtaaatttttcacttcccacgccaaaacgaaacagtttacgcaccacgtttttagaggtcacaaacacgaaaattttggagcgcaaaccgaccttgagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 3 Min: 111 Max: 284 Len: 174 Subject: UniRef90_Q7MU89 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-10 bit: 68.9 Len: 162 Query Start:117 Query End:278 Subject Strand: null Subject Start: 13 Subject End: 66 .................................................................................................................... S S Q K S A D C G L C F P R K R N E I F F V V V R K F F T S H A K T K Q F T H H V F R G H K H E N F G A Q T ............................................................................................................................................................................................................................................................................................................................ .................................................................................................................... T N Q K S S D C G S C F L K K W R E I F F V L A C K F F N C R A K T K K F S R H V F V G N K C E N S G T Q T ............................................................................................................................................................................................................................................................................................................................ Subject: UniRef90_Q7MUH1 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 1.0E-8 bit: 62.0 Len: 168 Query Start:117 Query End:284 Subject Strand: null Subject Start: 6 Subject End: 61 .................................................................................................................... K V G L R S K I F V F V T S K N V V R K L F R F G V G S E K F T H H D E K N L V P F S R K T Q T A I G R F L A R ...................................................................................................................................................................................................................................................................................................................... .................................................................................................................... R I G L G S K I F P F A T P Q N A V R K L F Y F G V G S K K F S R H N E K I L A P L F Q G I R A T I G A F P V R ...................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q7MX96 Cluster: Hypothetical protein; n=1; Porphyromonas gingivalis|Rep: Hypothetical protein - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 4.0E-6 bit: 53.5 Len: 135 Query Start:111 Query End:245 Subject Strand: null Subject Start: 2 Subject End: 46 .............................................................................................................. S K N V V R K L F R F G V G S E K F T H H D E K N L V P F S R K T Q T A I G R F L A R G W ............................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................. S K N V A R K L F R F G V G T E K F T H R N E I F L V P F F P K S G L S F S R K M V R N F ............................................................................................................................................................................................................................................................................................................................................................. actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 50 End: 190 ................................................. M H P L A H I Y R C I S L A S V I R S P A N L E P K I C R L R S V F S E K T E R D F F R R G A .................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 144 End: 350 ............................................................................................................................................... M C F P R K R N E I F F V V V R K F F T S H A K T K Q F T H H V F R G H K H E N F G A Q T D L E L S P T P E H P E C R A .................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 16 End: 423 ............... M V P D K S T S I P T D T S L G S Y I P M H Q P R F G D P I S G Q P R A K N L P I A V C V F R E N G T R F F S S W C V N ........................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 314 End: 439 ......................................................................................................................................................................................................................................................................................................................... M S S R C V L P P F K P I E K K K D P Q E G L S G R L S L S W I R S Q F I R D P C V ........................................................................................................................................................... Protein_Len: 36 Strand: + Start: 466 End: 573 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M G R E S S L F I A S K R E R S R A I L F R Q A F P L Q D S G V F F R S ..................... Protein_Len: 60 Strand: + Start: 366 End: 593 ............................................................................................................................................................................................................................................................................................................................................................................. M H K R V C Q D D S P S H G S G H S L L E T L V Y K G V L N P P A D R T G E F A V H R L K A G K K S G D S L P T S I P T . Protein_Len: 41 Strand: - Start: 251 End: 373 .......................................................................................................................................................................................................................................................... L C S F K P A C V S R S S D G V G S C G S H R A P A N Q W W E L R Y F F L F I W M ............................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 244 End: 465 ................................................................................................................................................................................................................................................... A I G S A P V D Q I D L R H T K G G N L G I S F F F S G C S P K D P R S E R E H I R D C N I L S G Q T Y P P R L G E R M ................................................................................................................................. Protein_Len: 60 Strand: - Start: 84 End: 275 ................................................................................... S G I E P W G R A L F R G I A T Q T K R S F P V L N K E D H H T F K E S G V G F R F L K R V V N K S T V F V F I K S R M ............................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 67 End: 195 .................................................................. I Y R H M L R A E T I R D G A L R S G F I Q R N R D T N E S F V S R S K K R R P A Y M ............................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 56 Strand: - Start: 47 End: 214 .............................................. L Y M G Q S M Y V S A D A E S R H D S R R G V E L W F D A S Q P R H K G L F R F S I K K T T T R L N K V E W A M ............................................................................................................................................................................................................................................................................................................................................................................................ actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 41 HP_score: -2.6 Tail_Score: -2.98823 Start: 73 End: 95 Full_Region: ccggagatcggatca ccgaagcg aggctga tgcatcgg tatatatgagccaag ........................................................................ccgaagcgaggctgatgcatcgg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 82 HP_score: -7.9 Tail_Score: -4.59773 Start: 182 End: 237 Full_Region: CGAGATTTTTTTCGT CGTGGTGCGTAAATTTTTCACTT CCCACGCCA AAACGAAACAGTTTACGCACCACG TTTTTAGAGGTCACA .....................................................................................................................................................................................CGTGGTGCGTAAATTTTTCACTTCCCACGCCAAAACGAAACAGTTTACGCACCACG..................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -3.1 Tail_Score: -5.71712 Start: 361 End: 414 Full_Region: tctctaataaactgt gaccggatccatgagagggagagtcg tcc tgacaaaccctcttgtggatctttc tttttttctatcggc ........................................................................................................................................................................................................................................................................................................................................................................gaccggatccatgagagggagagtcgtcctgacaaaccctcttgtggatctttc.................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -10.7 Tail_Score: -5.29742 Start: 365 End: 409 Full_Region: aataaactgtgaccg gatccatgagagggagagtcg tcc tgacaaaccctcttgtggatc tttctttttttctat ............................................................................................................................................................................................................................................................................................................................................................................gatccatgagagggagagtcgtcctgacaaaccctcttgtggatc......................................................................................................................................................................................... Find igs database================================================ Query_seq: PG2099:PG2100|PG2099:PG2100:ATP-dependent RNA helicase, DEAD/DEAH box family:immunoreactive 63 kDa antigen PG102:<-<-:2208023..2208616 594 actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctccggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc Intra-Species Hit: Count: 1 Min: 1 Max: 594 Len: 594 Subject: NC_002950_PG2099_PG2100|ATP-dependent RNA helicase, DEAD/DEAH box family:immunoreactive 63 kDa antigen PG102|NEGATIVE:NEGATIVE|[2208023,2208616]|594 HSP 1 e-value: 1.0E-161 bit: 571.0 Len: 309 Query Start:286 Query End:594 Subject Strand: POSITIVE Subject Start: 286 Subject End: 594 .............................................................................................................................................................................................................................................................................................agctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagnnnnnnngaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc .............................................................................................................................................................................................................................................................................................agctatccccgacgccggaacatcctgaatgtcgagccggtgcgttttgccaccattcaagccgatagaaaaaaagaaagatccacaagagggtttgtcaggacgactctccctctcatggatccggtcacagtttattagagacccttgtgtataagggggtcttaaaccctcccgcagatcggacgggagagttcgctgttcatcgcctcaaagcgggaaagaagtcgggcgattctcttccgacaagcattcccactccaagactcaggtgtctttttccgttcttagatttttcgtgccgatttc HSP 2 e-value: 3.0E-54 bit: 214.0 Len: 108 Query Start:1 Query End:108 Subject Strand: POSITIVE Subject Start: 1 Subject End: 108 actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... actctaaaaacggacttggttccggacaaaagtacgtcaattcctacagatacatcccttggctcatatataccgatgcatcagcctcgcttcggtgatccgatctcc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUCUAAAAACGGACUUGGUUCCGGACAAAAGUACGUCAAUUCCUACAGAUACAUCCCUUGGCUCAUAUAUACCGAUGCAUCAGCCUCGCUUCGGUGAUCCGAUCUCCGGCCAACCUCGAGCCAAAAAUCUGCCGAUUGCGGUCUGUGUUUUCCGAGAAAACGGAACGAGAUUUUUUUCGUCGUGGUGCGUAAAUUUUUCACUUCCCACGCCAAAACGAAACAGUUUACGCACCACGUUUUUAGAGGUCACAAACACGAAAAUUUUGGAGCGCAAACCGACCUUGAGCUAUCCCCGACGCCGGAACAUCCUGAAUGUCGAGCCGGUGCGUUUUGCCACCAUUCAAGCCGAUAGAAAAAAAGAAAGAUCCACAAGAGGGUUUGUCAGGACGACUCUCCCUCUCAUGGAUCCGGUCACAGUUUAUUAGAGACCCUUGUGUAUAAGGGGGUCUUAAACCCUCCCGCAGAUCGGACGGGAGAGUUCGCUGUUCAUCGCCUCAAAGCGGGAAAGAAGUCGGGCGAUUCUCUUCCGACAAGCAUUCCCACUCCAAGACUCAGGUGUCUUUUUCCGUUCUUAGAUUUUUCGUGCCGAUUUC .((((((((((...((((.((((((((........)))..((((...(((((((..((.((((((.....((((((.((.........)).))))))..(((.....)))........))))))..((((....))))..))..)))))))...).)))..)))))))))............((((((((((((((((((.................)))).))))))))))))))))))))))))........((((((((.(((((((((.(((..(((((((((((......((.((..(((((..(((..(((((.((.((((.(.....)))))......)))))))........((..((((((..((((((...(((.....)))...))))))..))))))...)).))).......(((((((((........))))))))).(((.(((((((......).)))))).)))...)))))...)).))..((.(((((.(..((((((.(.....).))))))...).))))).))...)).)))))).)))..))).))))).)))).))))))))........ (-193.93) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GAAAUCGGCACGAAAAAUCUAAGAACGGAAAAAGACACCUGAGUCUUGGAGUGGGAAUGCUUGUCGGAAGAGAAUCGCCCGACUUCUUUCCCGCUUUGAGGCGAUGAACAGCGAACUCUCCCGUCCGAUCUGCGGGAGGGUUUAAGACCCCCUUAUACACAAGGGUCUCUAAUAAACUGUGACCGGAUCCAUGAGAGGGAGAGUCGUCCUGACAAACCCUCUUGUGGAUCUUUCUUUUUUUCUAUCGGCUUGAAUGGUGGCAAAACGCACCGGCUCGACAUUCAGGAUGUUCCGGCGUCGGGGAUAGCUCAAGGUCGGUUUGCGCUCCAAAAUUUUCGUGUUUGUGACCUCUAAAAACGUGGUGCGUAAACUGUUUCGUUUUGGCGUGGGAAGUGAAAAAUUUACGCACCACGACGAAAAAAAUCUCGUUCCGUUUUCUCGGAAAACACAGACCGCAAUCGGCAGAUUUUUGGCUCGAGGUUGGCCGGAGAUCGGAUCACCGAAGCGAGGCUGAUGCAUCGGUAUAUAUGAGCCAAGGGAUGUAUCUGUAGGAAUUGACGUACUUUUGUCCGGAACCAAGUCCGUUUUUAGAGU .................((((((((((((........(((((((((..(((((((((.....(((((..(.....)..)))))....)))))))))..)).(((((.((((.((((((((((((.......)))))))))))).(((..(((((......)))))..)))......))))....(((((((..((((((...(((.....)))...))))))..)))))))...........)))))..((((.(((((........)))))..)))).)))))))..(((((((((..(((.....)))...((((((((.(((...........((.(((((((...........(((((((((((((...(((((((((.......)))))))))..)))))))))))))...............(((((......)))))..)))))))))...((((..(((((((((((.......)))))))))))......)))).)))..((.(((((((((((........)))....)))))))).))..)))))))).......)).)))))))....)))))))))))).. (-216.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1117 120 71 211 162 NC_002950:PG2099|5end_ATP-dependent_RNA_helicase,_DEAD/DEAH_box_family_2207932..2208162_NEGATIVE 679 230 181 73 21 NC_002950:PG0313|5end_hypothetical_protein_347366..347596_POSITIVE 551 220 171 61 12 NC_002950:PG2064|5end_hypothetical_protein_2160550..2160780_POSITIVE 533 220 173 97 50 NC_002950:PG1980|5end_hypothetical_protein_2067930..2068160_NEGATIVE 494 119 74 42 1 NC_002950:PG1787|5end_hypothetical_protein_1875908..1876138_NEGATIVE 488 340 291 90 26 NC_002950:PG1091|5end_DHH_subfamily_1_protein_1157017..1157247_POSITIVE 467 180 133 57 10 NC_002950:PG0174|5end_pyridine_nucleotide-disulphide_oxidoreductase_family_protein_197628..197858_NEGATIVE 453 119 73 152 108 NC_002950:PG1398|5end_hypothetical_protein_1480694..1480924_POSITIVE 437 490 441 168 98 NC_002950:PG0124|5end_hypothetical_protein_146234..146464_NEGATIVE 430 330 284 197 144 NC_002950:PG1488|5end_hypothetical_protein_1561747..1561977_POSITIVE 429 139 92 224 176 NC_002950:PG0744|5end_RNA_methyltransferase,_TrmH_family_791897..792127_NEGATIVE 425 520 479 62 19 NC_002950:PG0446|5end_thiF_protein_486599..486829_POSITIVE 424 505 461 220 176 NC_002950:PG2098|5end_hypothetical_protein_2206635..2206865_NEGATIVE 421 496 454 152 103 NC_002950:PG1695|5end_hypothetical_protein_1779440..1779670_POSITIVE 421 330 281 159 96 NC_002950:PG0979|5end_hypothetical_protein_1040752..1040982_POSITIVE 411 207 161 62 16 NC_002950:PG1799|5end_hypothetical_protein_1894499..1894729_POSITIVE 408 507 461 225 175 NC_002950:PG0216|5end_hypothetical_protein_251956..252186_POSITIVE 404 497 455 85 18 NC_002950:PG1525|5end_isochorismate_synthase,_putative_1603865..1604095_NEGATIVE 403 520 472 57 3 NC_002950:PG2029|5end_hypothetical_protein_2126543..2126773_POSITIVE 403 120 72 213 161 NC_002950:PG2000|5end_signal_peptidase-related_protein_2089468..2089698_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 469 247 202 50 7 NC_002950:PG1546|3end_hypothetical_protein_1624355..1624505_POSITIVE 429 139 92 139 91 NC_002950:PG0745|3end_lactoylglutathione_lyase,_putative_791982..792132_NEGATIVE 398 479 431 151 84 NC_002950:PG0125|3end_hypothetical_protein_146238..146388_NEGATIVE 390 220 173 143 96 NC_002950:PG1718|3end_hypothetical_protein_1806532..1806682_NEGATIVE 386 515 472 122 77 NC_002950:PG1104|3end_hypothetical_protein_1175782..1175932_POSITIVE 386 126 82 151 114 NC_002950:PG0511|3end_spore_maturation_protein_A/spore_maturation_protein_B_550096..550246_NEGATIVE 384 118 76 141 87 NC_002950:PG1310|3end_exsB_protein_1389826..1389976_POSITIVE 384 110 73 82 23 NC_002950:PG1115|3end_signal_recognition_particle_protein_1188887..1189037_POSITIVE 378 507 462 70 30 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 373 327 281 142 101 NC_002950:PG1232|3end_glutamate_dehydrogenase_1308274..1308424_NEGATIVE 371 189 145 50 4 NC_002950:PG1473|3end_conjugative_transposon_protein_TraQ_1549761..1549911_NEGATIVE 370 110 73 75 42 NC_002950:PG0328|3end_imidazolonepropionase_362155..362305_NEGATIVE 366 519 472 103 59 NC_002950:PG1641|3end_phosphotyrosine_protein_phosphatase_1721260..1721410_NEGATIVE 365 494 461 147 119 NC_002950:PG1248|3end_hypothetical_protein_1325801..1325951_NEGATIVE 365 339 295 121 65 NC_002950:PG0604|3end_4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase_661211..661361_POSITIVE 363 530 483 60 7 NC_002950:PG2110|3end_thiamine_biosynthesis_protein_ThiC_2219449..2219599_NEGATIVE 362 486 445 103 49 NC_002950:PG1972|3end_hemagglutinin_protein_HagB_2061203..2061353_POSITIVE 362 476 431 71 23 NC_002950:PG1874|3end_hypothetical_protein_1969253..1969403_NEGATIVE 362 339 294 105 33 NC_002950:PG0555|3end_DNA-binding_protein,_histone-like_family_611716..611866_NEGATIVE 361 506 461 136 81 NC_002950:PG2040|3end_DNA-binding_protein,_histone-like_family_2138398..2138548_NEGATIVE