Origin IGS: aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 acacaaatcctgttttatttgttttccgatggtcgcaaagatagggaaaaagaaactttttgtccgtaattaaagcattttgcagattctgcggattccggctatcagtgcaatactaaggtaaattttgcaagaagcattcgagcggagttctgaattcgaattcctttcttggtctacacattcgggacattccgccaacacaccttcaagtctggcaagacttgctcggccgacagagaaccatcagtctctcggaaatttccataaaggtatcagaagtccattctttcggatgtctgaaagtcttcgttgctctatgaaatatacgtgccaaaaaagttttcaacaacgaagctgagtttagaatcattccaaataagtatccgaaaggaagcggattttgaggtgaaagagacaagaaagcgaccttttggggcttgcaattcgctttgtaggaggttgatttgcgatttatatataaaccgttttcgatttgtatatagatcgtttctaatttatatataaatcgcttttgattaatatatagattgattgccatttgtatataaatcggatagcccaaaaggcccttatcgagggccataaataaagagacacgcgccaggttcactatagaactcggcgcgtgtctctttattttgagtgctttatggagaggatctgttcctttttatttgtctgatacagcctcccctttattcaaatactgcgatgtcgaatgtatctgtcggggcgacaatgccgaccgcaaagctcgcgtgtgggaggtaatttcagtactcataatttattatcgtttagtcgtttattaaagtaattctattcgttcgaaagactgttcggtcgcaacattaagctttctgtagaaacctctatcggccggcaaatatagcgaagccgaaactacagggaatcgtaatctgcacattcaattatcaagtgcaacggtctgcccattttatccgcgggtctatctgtttaggaatatgtgaagggtgaaaaggtgtttaagattcggcaaaaatagtgtagctttgcaatctaagtttt Mask Tandem Repeat Region ================================================ aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Find is-nt database================================================ Query_seq: PG2083:PG2085|PG2083:PG2085:hypothetical protein:tryptophanyl-tRNA synthetase:<-->:2184598..2185671 1074 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PG2083:PG2085|PG2083:PG2085:hypothetical protein:tryptophanyl-tRNA synthetase:<-->:2184598..2185671 1074 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PG2083:PG2085|PG2083:PG2085:hypothetical protein:tryptophanyl-tRNA synthetase:<-->:2184598..2185671 1074 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Predict ORF larger than 30AA ================================================ Protein_Len: 39 Strand: + Start: 123 End: 239 .......................................................................................................................... M C R L R F P V V S A S L Y L P A D R G F Y R K L N V A T E Q S F E R I E L L ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 264 End: 377 ....................................................................................................................................................................................................................................................................... M M S T E I T S H T R A L R S A L S P R Q I H S T S Q Y L N K G E A V S D K ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: + Start: 454 End: 558 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S L Y L W P S I R A F W A I R F I Y K W Q S I Y I L I K S D L Y I N .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 601 End: 702 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M A N Q P P T K R I A S P K R S L S C L F H L K I R F L S D T Y L E .................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 557 End: 754 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M R N D L Y T N R K R F I Y K S Q I N L L Q S E L Q A P K G R F L V S F T S K S A S F R I L I W N D S K L S F V V E N F ................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 414 End: 863 ............................................................................................................................................................................................................................................................................................................................................................................................................................. M K R H A P S S I V N L A R V S L F M A L D K G L L G Y P I Y I Q M A I N L Y I N Q K R F I Y K L E T I Y I Q I E N G L ................................................................................................................................................................................................................... Protein_Len: 44 Strand: + Start: 871 End: 1002 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L A E C P E C V D Q E R N S N S E L R S N A S C K I Y L S I A L I A G I R R I C K M L ........................................................................ Protein_Len: 37 Strand: - Start: 808 End: 918 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... P F K R S V S P E R D A S C T K G S K F T H Q R F T G F T Y V L F P I R M ............................................................................................................................................................ Protein_Len: 56 Strand: - Start: 755 End: 922 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L A V F V K L C G F S H V E S V K I S I E S L S I T R Q R G L L D Q W V Q L H T P P I D R I H L G L F S N S N M ........................................................................................................................................................ Protein_Len: 60 Strand: - Start: 717 End: 950 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ E S M R F F P S R I G K H F N G L S Q H N E T P R A L R A L S S P T N A S H G S H T S W S L F E F E S S R E F A E Q L M ............................................................................................................................ Protein_Len: 60 Strand: - Start: 550 End: 762 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R N I Y L D C I L R R C L S N C A G F P R K R T E K V E F D A E K R I S I Q F S E L S L K T T S F K K P V Y I E Y L M ........................................................................................................................................................................................................................................................................................................................ Protein_Len: 42 Strand: - Start: 283 End: 408 .......................................................................................................................................................................................................................................................................................... R G C A L K A T P M T A G V S V N S M A T N S Y L P P Q I L C I F L F L D E G Y L M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 242 End: 469 ................................................................................................................................................................................................................................................. V R A K R D A N D G R C I C E V D C Y K F L P S A T D S L Y F P V S G R W L A S L I F L C A G L E I T F R A R T E K N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 39 Strand: - Start: 237 End: 353 ............................................................................................................................................................................................................................................ K L L R S F S L L N H T S F N G G V R S S Q P R C Q R G S L Y M R C R L I Q M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 55 End: 162 ...................................................... G E C I G L C I S G R I F H A S R Q V Q Y N F T C I V I G Q L K P K A M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 529 End: 558 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATATATAAATCGCTTTTGATTAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: + Score: 84 Start: 738 End: 754 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACGTATATTTCA................................................................................................................................................................................................................................................................................................................................ aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -24.6 Tail_Score: -3.87994 Start: 415 End: 464 Full_Region: ATAAAGCACTCAAAA TAAAGAGACACGCGCCGAGTTC TATAGT GAACCTGGCGCGTGTCTCTTTA TTTATGGCCCTCGAT ..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAGACACGCGCCGAGTTCTATAGTGAACCTGGCGCGTGTCTCTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -24.6 Tail_Score: -4.26681 Start: 415 End: 464 Full_Region: atcgagggccataaa taaagagacacgcgccaggttc actata gaactcggcgcgtgtctcttta ttttgagtgctttat ..............................................................................................................................................................................................................................................................................................................................................................................................................................taaagagacacgcgccaggttcactatagaactcggcgcgtgtctcttta.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -21.0 Tail_Score: -4.55697 Start: 419 End: 460 Full_Region: AGCACTCAAAATAAA GAGACACGCGCCGAGTTC TATAGT GAACCTGGCGCGTGTCTC TTTATTTATGGCCCT ..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACACGCGCCGAGTTCTATAGTGAACCTGGCGCGTGTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -21.0 Tail_Score: -4.6951 Start: 419 End: 460 Full_Region: agggccataaataaa gagacacgcgccaggttc actata gaactcggcgcgtgtctc tttattttgagtgct ..................................................................................................................................................................................................................................................................................................................................................................................................................................gagacacgcgccaggttcactatagaactcggcgcgtgtctc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 89 HP_score: -9.4 Tail_Score: -4.16943 Start: 470 End: 486 Full_Region: TGTCTCTTTATTTAT GGCCCT CGATA AGGGCC TTTTGGGCTATCCGA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTCGATAAGGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 62 HP_score: -3.3 Tail_Score: -4.48333 Start: 542 End: 583 Full_Region: atatataaaccgttt tcgatttgtatatagat cgtttcta atttatatataaatcgc ttttgattaatatat .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcgatttgtatatagatcgtttctaatttatatataaatcgc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 62 HP_score: -6.8 Tail_Score: -3.27915 Start: 543 End: 582 Full_Region: tatataaaccgtttt cgatttgtatatagat cgtttcta atttatatataaatcg cttttgattaatata ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttgtatatagatcgtttctaatttatatataaatcg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 90 HP_score: -11.0 Tail_Score: -4.19307 Start: 565 End: 604 Full_Region: taggaggttgatttg cgatttatatataaaccg tttt cgatttgtatatagatcg tttctaatttatata ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaaccgttttcgatttgtatatagatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PG2083:PG2085|PG2083:PG2085:hypothetical protein:tryptophanyl-tRNA synthetase:<-->:2184598..2185671 1074 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Intra-Species Hit: Count: 10 Min: 1 Max: 1074 Len: 1074 Subject: NC_002950_PG2083_PG2085|hypothetical protein:tryptophanyl-tRNA synthetase|NEGATIVE:POSITIVE|[2184598,2185671]|1074 HSP 1 e-value: 0.0 bit: 2129.0 Len: 1074 Query Start:1 Query End:1074 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1074 aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt aaaacttagattgcaaagctacactatttttgccgaatcttaaacaccttttcacccttcacatattcctaaacagatagacccgcggataaaatgggcagaccgttgcacttgataattgaatgtgcagattacgattccctgtagtttcggcttcgctatatttgccggccgatagaggtttctacagaaagcttaatgttgcgaccgaacagtctttcgaacgaatagaattactttaataaacgactaaacgataataaattatgagtactgaaattacctcccacacgcgagctttgcggtcggcattgtcgccccgacagatacattcgacatcgcagtatttgaataaaggggaggctgtatcagacaaataaaaaggaacagatcctctccataaagcactcaaaataaagagacacgcgccgagttctatagtgaacctggcgcgtgtctctttatttatggccctcgataagggccttttgggctatccgatttatatacaaatggcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaatcaacctcctacaaagcgaattgcaagccccaaaaggtcgctttcttgtctctttcacctcaaaatccgcttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttcatagagcaacgaagactttcagacatccgaaagaatggacttctgatacctttatggaaatttccgagagactgatggttctctgtcggccgagcaagtcttgccagacttgaaggtgtgttggcggaatgtcccgaatgtgtagaccaagaaaggaattcgaattcagaactccgctcgaatgcttcttgcaaaatttaccttagtattgcactgatagccggaatccgcagaatctgcaaaatgctttaattacggacaaaaagtttctttttccctatctttgcgaccatcggaaaacaaataaaacaggatttgtgt Subject: NC_002950_PG1375_PG1378|hypothetical protein:A/G-specific adenine glycosylase|POSITIVE:NEGATIVE|[1456804,1457804]|1001 HSP 1 e-value: 2.0E-13 bit: 79.8 Len: 48 Query Start:692 Query End:739 Subject Strand: NEGATIVE Subject Start: 321 Subject End: 368 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaactttttt............................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcatcttcattgttgaaaactttttt............................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-8 bit: 63.9 Len: 52 Query Start:546 Query End:597 Subject Strand: NEGATIVE Subject Start: 462 Subject End: 513 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttatatataaattagaaacgatctatatacaaatcgaaaacggtttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttatatatagatcaaaaacgatctatatacaaatcgaaaatgatttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG0369_PG0371|phosphopantetheine adenylyltransferase:hypothetical protein|POSITIVE:POSITIVE|[403812,404182]|371 HSP 1 e-value: 7.0E-13 bit: 77.8 Len: 51 Query Start:692 Query End:742 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 194 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatcattccaaactcatcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-6 bit: 56.0 Len: 75 Query Start:523 Query End:597 Subject Strand: NEGATIVE Subject Start: 289 Subject End: 361 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atctatatat--atcaaaaacgatttatatataaaacggaaacgatttgtatacaaattgaaaacactttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Subject: NC_002950_PG1574_PG1576|hypothetical protein:L-aspartate oxidase|NEGATIVE:POSITIVE|[1652704,1653155]|452 HSP 1 e-value: 3.0E-12 bit: 75.8 Len: 82 Query Start:523 Query End:604 Subject Strand: POSITIVE Subject Start: 6 Subject End: 87 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atctatatatttatcaaaaacgatttaaatataaaatgaaaacgatttgtatacaaattgaaaacgctttatatacaaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 55 Query Start:688 Query End:742 Subject Strand: POSITIVE Subject Start: 171 Subject End: 225 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gatacttatttggaatcgttccaaactcgtcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG1866_PG1868|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[1964797,1965187]|391 HSP 1 e-value: 1.0E-11 bit: 73.8 Len: 61 Query Start:678 Query End:738 Subject Strand: POSITIVE Subject Start: 293 Subject End: 353 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttcctttcggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttt................................................................................................................................................................................................................................................................................................................................................ .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttcctttcaggtgcttatttggaatgattccaaactcgtcttcgttgttgaaaacttttt................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-7 bit: 60.0 Len: 54 Query Start:548 Query End:601 Subject Strand: POSITIVE Subject Start: 119 Subject End: 172 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcagatacgatctgtatacaaatggaaaacgatttgtatataaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG0340_PG0343|hypothetical protein:methionine gamma-lyase|POSITIVE:NEGATIVE|[376497,377270]|774 HSP 1 e-value: 1.0E-11 bit: 73.8 Len: 89 Query Start:516 Query End:604 Subject Strand: POSITIVE Subject Start: 406 Subject End: 494 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaatcaatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaatcgatttatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcgaaaaagctttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-11 bit: 73.8 Len: 53 Query Start:692 Query End:744 Subject Strand: POSITIVE Subject Start: 582 Subject End: 634 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcac.......................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattccaaactcgtcttcgttgttgaaaacttttttcgcac.......................................................................................................................................................................................................................................................................................................................................... HSP 3 e-value: 4.0E-11 bit: 71.9 Len: 84 Query Start:521 Query End:604 Subject Strand: POSITIVE Subject Start: 389 Subject End: 472 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatctatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caatctatatatttatcgcaatcgatttatatataaattaaaaatgatttatatacaaaatgaaaacgatatatatacaaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1889_PG1890|hypothetical protein:lipoprotein, putative|POSITIVE:POSITIVE|[1987151,1987704]|554 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 72 Query Start:526 Query End:597 Subject Strand: POSITIVE Subject Start: 159 Subject End: 230 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatattaatcaaaagcgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatatttattgaaaacgatttatatataaattgaaaacgatctatatataaattgaaaatggtttatata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 4.0E-8 bit: 61.9 Len: 51 Query Start:692 Query End:742 Subject Strand: POSITIVE Subject Start: 326 Subject End: 376 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttagaatgattctaagctcgtcttcattgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0094_PG0095|outer membrane efflux protein, putative:DNA mismatch repair protein|NEGATIVE:NEGATIVE|[111284,112177]|894 HSP 1 e-value: 4.0E-11 bit: 71.9 Len: 56 Query Start:687 Query End:742 Subject Strand: POSITIVE Subject Start: 775 Subject End: 830 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatacttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggatgcttatttggaatgattccaagctcgtcttcgttgttgaaaacttttttggc............................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-10 bit: 67.9 Len: 54 Query Start:548 Query End:601 Subject Strand: POSITIVE Subject Start: 636 Subject End: 689 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatatataaatcagatacgatttatatacaaattgaaaacgatttatatataaa......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002950_PG1130_PG1132|TPR domain protein:valyl-tRNA synthetase|POSITIVE:POSITIVE|[1210191,1211051]|861 HSP 1 e-value: 2.0E-10 bit: 69.9 Len: 67 Query Start:543 Query End:609 Subject Strand: POSITIVE Subject Start: 359 Subject End: 425 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattagaaacgatctatatacaaatcgaaaacggtttatatataaatcgcaaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cgatttatatataaattgaaaacgattaatatacagatcgaaaatgatttatatataaatcgaaaat................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-10 bit: 69.9 Len: 63 Query Start:692 Query End:754 Subject Strand: POSITIVE Subject Start: 530 Subject End: 592 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaacttttttggcacgtatatttca................................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttagaatcattcaaaactcatcttcgttgttgaaaacttttttggtgcgtatttttca................................................................................................................................................................................................................................................................................................................................ Subject: NC_002950_PG0022_PG0024|sulfate permease family protein:redox-sensing transcriptional repressor Rex|NEGATIVE:POSITIVE|[26887,27871]|985 HSP 1 e-value: 2.0E-7 bit: 60.0 Len: 46 Query Start:692 Query End:737 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 282 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttggaatgattctaaactcagcttcgttgttgaaaactttt................................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatttagaatgattccaaactcttcttcgttgttgaaaactttt................................................................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 7.0E-7 bit: 58.0 Len: 41 Query Start:564 Query End:604 Subject Strand: NEGATIVE Subject Start: 414 Subject End: 454 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatctatatacaaatcgaaaacggtttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................acgatctatatacaaatggaaaatgatttatatataaatcg...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAACUUAGAUUGCAAAGCUACACUAUUUUUGCCGAAUCUUAAACACCUUUUCACCCUUCACAUAUUCCUAAACAGAUAGACCCGCGGAUAAAAUGGGCAGACCGUUGCACUUGAUAAUUGAAUGUGCAGAUUACGAUUCCCUGUAGUUUCGGCUUCGCUAUAUUUGCCGGCCGAUAGAGGUUUCUACAGAAAGCUUAAUGUUGCGACCGAACAGUCUUUCGAACGAAUAGAAUUACUUUAAUAAACGACUAAACGAUAAUAAAUUAUGAGUACUGAAAUUACCUCCCACACGCGAGCUUUGCGGUCGGCAUUGUCGCCCCGACAGAUACAUUCGACAUCGCAGUAUUUGAAUAAAGGGGAGGCUGUAUCAGACAAAUAAAAAGGAACAGAUCCUCUCCAUAAAGCACUCAAAAUAAAGAGACACGCGCCGAGUUCUAUAGUGAACCUGGCGCGUGUCUCUUUAUUUAUGGCCCUCGAUAAGGGCCUUUUGGGCUAUCCGAUUUAUAUACAAAUGGCAAUCAAUCUAUAUAUUAAUCAAAAGCGAUUUAUAUAUAAAUUAGAAACGAUCUAUAUACAAAUCGAAAACGGUUUAUAUAUAAAUCGCAAAUCAACCUCCUACAAAGCGAAUUGCAAGCCCCAAAAGGUCGCUUUCUUGUCUCUUUCACCUCAAAAUCCGCUUCCUUUCGGAUACUUAUUUGGAAUGAUUCUAAACUCAGCUUCGUUGUUGAAAACUUUUUUGGCACGUAUAUUUCAUAGAGCAACGAAGACUUUCAGACAUCCGAAAGAAUGGACUUCUGAUACCUUUAUGGAAAUUUCCGAGAGACUGAUGGUUCUCUGUCGGCCGAGCAAGUCUUGCCAGACUUGAAGGUGUGUUGGCGGAAUGUCCCGAAUGUGUAGACCAAGAAAGGAAUUCGAAUUCAGAACUCCGCUCGAAUGCUUCUUGCAAAAUUUACCUUAGUAUUGCACUGAUAGCCGGAAUCCGCAGAAUCUGCAAAAUGCUUUAAUUACGGACAAAAAGUUUCUUUUUCCCUAUCUUUGCGACCAUCGGAAAACAAAUAAAACAGGAUUUGUGU .......(((((((((((.........))))))..)))))...................((((...((((....((((((..(((..(.((((..(.(((((...((((((.............))))))...........((((.(((((((((((.....((((((((((((((((((.((((....))))............(((((..((((((((((..........................................((((..((.((((.((..((((((....((((.(..(((.....)))..))))).....(((((((...((....))..))))))).......))))))..)).))))))..))))..((((.....)))).(((((((((...(((((((((((((((((((((((.((((......)))).)))))))))))))))))))).))).....(((((((((((((((((((....((((.(((((.(.((........)).).))))).))))....((((((((((((((((((.....((((..........)))).....))))))))))))))))))..................((.....)).)).))))))))))).....)))))).........(((.((((((.(((.((((((((.....((((((.....))))))...((((((((((((((((..................)))))....))))))))).)).......))))))))))))))).)).)))...)))))))))......)))))))))).))))))))))))))))).))))))..(((...(((..((((((..((((((((...((..((((.((....((......))....)).)))).))..))))).))).(((.....))).....)))))))))...)))..)).)))))))))..))))..)))))....)..)))).)..)))..((((((...))))))..))))))((.((.....)).))............))))..)))). (-299.99) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACACAAAUCCUGUUUUAUUUGUUUUCCGAUGGUCGCAAAGAUAGGGAAAAAGAAACUUUUUGUCCGUAAUUAAAGCAUUUUGCAGAUUCUGCGGAUUCCGGCUAUCAGUGCAAUACUAAGGUAAAUUUUGCAAGAAGCAUUCGAGCGGAGUUCUGAAUUCGAAUUCCUUUCUUGGUCUACACAUUCGGGACAUUCCGCCAACACACCUUCAAGUCUGGCAAGACUUGCUCGGCCGACAGAGAACCAUCAGUCUCUCGGAAAUUUCCAUAAAGGUAUCAGAAGUCCAUUCUUUCGGAUGUCUGAAAGUCUUCGUUGCUCUAUGAAAUAUACGUGCCAAAAAAGUUUUCAACAACGAAGCUGAGUUUAGAAUCAUUCCAAAUAAGUAUCCGAAAGGAAGCGGAUUUUGAGGUGAAAGAGACAAGAAAGCGACCUUUUGGGGCUUGCAAUUCGCUUUGUAGGAGGUUGAUUUGCGAUUUAUAUAUAAACCGUUUUCGAUUUGUAUAUAGAUCGUUUCUAAUUUAUAUAUAAAUCGCUUUUGAUUAAUAUAUAGAUUGAUUGCCAUUUGUAUAUAAAUCGGAUAGCCCAAAAGGCCCUUAUCGAGGGCCAUAAAUAAAGAGACACGCGCCAGGUUCACUAUAGAACUCGGCGCGUGUCUCUUUAUUUUGAGUGCUUUAUGGAGAGGAUCUGUUCCUUUUUAUUUGUCUGAUACAGCCUCCCCUUUAUUCAAAUACUGCGAUGUCGAAUGUAUCUGUCGGGGCGACAAUGCCGACCGCAAAGCUCGCGUGUGGGAGGUAAUUUCAGUACUCAUAAUUUAUUAUCGUUUAGUCGUUUAUUAAAGUAAUUCUAUUCGUUCGAAAGACUGUUCGGUCGCAACAUUAAGCUUUCUGUAGAAACCUCUAUCGGCCGGCAAAUAUAGCGAAGCCGAAACUACAGGGAAUCGUAAUCUGCACAUUCAAUUAUCAAGUGCAACGGUCUGCCCAUUUUAUCCGCGGGUCUAUCUGUUUAGGAAUAUGUGAAGGGUGAAAAGGUGUUUAAGAUUCGGCAAAAAUAGUGUAGCUUUGCAAUCUAAGUUUU ((((......((((.((((((((..(((((((..(((..((((((((..............(((((((......((.....))......))))))))))..)))))..))).......((((...(((((((..((((....(.((((((((((((((.......((......)).......)))))))))..))))))..........(((((((....)))))))..((((((((((.(((......((((((.(((....))).........(((((.((((........)))).))))).((.((((((((.....(((((..................))))).))))))))))..........((((..((((...((.(((....))).))....))))..)))).))))))....(((((((..((((((.(((((((......)))))))..........((((((((((((((((.((....)).)))))))))))))))).((..((((((((((((((.((..(..(((........)))..)..)).))))))))))))))..))...)))))).(((((((...)))))))..(((((((((((((((((((..((((......))))..)))))))))))))))))))((((((((..((((((((((.....))))))))))............(((((((..............((((..((((...((((.(((((...)))))))))))))))))..((......)))))))))......)))))))).................)))))))...............)))..((....))))).))))))).........))))..))))))))))))))))))..)))))))).))))..((((((.((...(((.(((((....(((((.............))))))))))...))).(((((((((((..((((......))))....)))...)))))))).........)).)))))).......)))).((((........))))... (-338.26) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 967 130 81 221 172 NC_002950:PG2083|5end_hypothetical_protein_2184507..2184737_NEGATIVE 565 740 692 53 5 NC_002950:PG0995|5end_hypothetical_protein_1055585..1055815_NEGATIVE 531 740 692 120 72 NC_002950:PG0609|5end_hypothetical_protein_663183..663413_POSITIVE 526 740 692 65 17 NC_002950:PG0773|5end_hypothetical_protein_825131..825361_POSITIVE 507 748 705 91 48 NC_002950:PG1357|5end_hypothetical_protein_1436458..1436688_NEGATIVE 450 340 292 76 29 NC_002950:PG1992|5end_glucose-inhibited_division_protein_A_2081410..2081640_POSITIVE 450 590 542 123 77 NC_002950:PG0371|5end_hypothetical_protein_404043..404273_POSITIVE 446 966 921 170 125 NC_002950:PG2166|5end_hypothetical_protein_2271809..2272039_POSITIVE 440 327 283 81 28 NC_002950:PG0210|5end_precorrin-6x_reductase/cobalamin_biosynthetic_protein_CbiD_245969..246199_NEGATIVE 437 859 818 51 13 NC_002950:PG0477|5end_pantoate--beta-alanine_ligase_519597..519827_NEGATIVE 429 328 283 119 70 NC_002950:PG0605|5end_hypothetical_protein_662406..662636_NEGATIVE 422 590 542 120 71 NC_002950:PG1574|5end_hypothetical_protein_1652613..1652843_NEGATIVE 417 319 278 192 138 NC_002950:PG1538|5end_undecaprenol_kinase,_putative_1617631..1617861_POSITIVE 401 877 831 198 147 NC_002950:PG0986|5end_hypothetical_protein_1047426..1047656_POSITIVE 399 590 541 125 76 NC_002950:PG1222|5end_hypothetical_protein_1299392..1299622_NEGATIVE 394 890 842 181 123 NC_002950:PG2097|5end_ribose-phosphate_pyrophosphokinase_2206462..2206692_NEGATIVE 388 335 293 57 6 NC_002950:PG0143|5end_hydrolase,_carbon-nitrogen_family_166625..166855_NEGATIVE 385 888 842 79 23 NC_002950:PG0003|5end_hypothetical_protein_2938..3168_NEGATIVE 382 340 300 227 181 NC_002950:PG2140|5end_ribosomal_protein_L32_2246134..2246364_POSITIVE 381 889 841 178 126 NC_002950:PG1057|5end_hypothetical_protein_1123419..1123649_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 624 740 692 54 6 NC_002950:PG1868|3end_hypothetical_protein_1965098..1965248_NEGATIVE 526 740 692 58 10 NC_002950:PG0772|3end_hypothetical_protein_825204..825354_POSITIVE 494 590 541 52 3 NC_002950:PG0773|3end_hypothetical_protein_825348..825498_POSITIVE 452 720 674 149 95 NC_002950:PG0995|3end_hypothetical_protein_1055469..1055619_NEGATIVE 440 327 283 84 31 NC_002950:PG0211|3end_cobalamin_biosynthesis_protein_CbiG/precorrin-4_C11-methyltransferase_245966..246116_NEGATIVE 429 328 283 74 25 NC_002950:PG0606|3end_hypothetical_protein_662451..662601_NEGATIVE 422 327 282 142 88 NC_002950:PG1173|3end_YkgG_family_protein_1253129..1253279_POSITIVE 417 319 278 84 30 NC_002950:PG1537|3end_hypothetical_protein_1617603..1617753_POSITIVE 403 328 283 129 86 NC_002950:PG1392|3end_rod_shape-determining_protein_RodA,_putative_1472959..1473109_NEGATIVE 392 598 551 50 3 NC_002950:PG1357|3end_hypothetical_protein_1436327..1436477_NEGATIVE 388 880 831 90 32 NC_002950:PG0333|3end_hypothetical_protein_368811..368961_POSITIVE 382 144 102 131 93 NC_002950:PG1314|3end_chorismate_synthase_1394362..1394512_NEGATIVE 371 890 842 85 25 NC_002950:PG0148|3end_sigma-54-dependent_transcriptional_regulator_169654..169804_NEGATIVE 368 870 822 123 80 NC_002950:PG2145|3end_polysaccharide_deacetylase_2253938..2254088_POSITIVE 366 728 692 151 115 NC_002950:PG1167|3end_hypothetical_protein_1248644..1248794_POSITIVE 366 325 282 41 3 NC_002950:PG0735|3end_aminotransferase,_class_V_785677..785827_POSITIVE 364 344 301 144 97 NC_002950:PG2205|3end_2-dehydropantoate_2-reductase_2317145..2317295_POSITIVE 361 878 832 151 110 NC_002950:PG1687|3end_HIT_family_protein_1773812..1773962_NEGATIVE 357 500 451 88 36 NC_002950:PG0607|3end_hypothetical_protein_662994..663144_POSITIVE 356 180 136 75 30 NC_002950:PG1942|3end_30S_ribosomal_protein_S12_2027946..2028096_NEGATIVE